assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	1	164154-164238	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	164180-164212|164180-164212|164180-164212	NC_020568.1_801133-801101|NC_020568.1_801192-801160|NC_020568.1_1415476-1415444	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_020568.1_153299_154505_+,NA|68aa|down_0|NC_020568.1_164299_164503_-	NA|402aa|up_9|NC_020568.1_153299_154505_+	NA	NA|402aa|up_8|NC_020568.1_154505_155711_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_020568.1_155721_156279_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_020568.1_156278_157166_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_020568.1_157219_158482_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_020568.1_158558_159704_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_020568.1_159768_160095_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_020568.1_160101_160485_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_020568.1_160911_162399_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_020568.1_163045_164005_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_020568.1_164299_164503_-	NA	NA|171aa|down_1|NC_020568.1_164681_165194_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_020568.1_165535_166276_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_020568.1_166289_167261_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_020568.1_167257_168019_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_020568.1_168031_169063_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_020568.1_169279_169639_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_020568.1_169812_170838_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_020568.1_171223_172474_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_020568.1_172920_180096_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	2	403438-403539	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_020568.1_393477_393687_-,NA|128aa|up_7|NC_020568.1_394511_394895_-,NA|33aa|up_1|NC_020568.1_401142_401241_+,NA|221aa|down_1|NC_020568.1_404629_405292_-,NA|179aa|down_7|NC_020568.1_411383_411920_-	NA|70aa|up_9|NC_020568.1_393477_393687_-	NA	NA|194aa|up_8|NC_020568.1_393864_394446_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_020568.1_394511_394895_-	NA	NA|209aa|up_6|NC_020568.1_395164_395791_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_020568.1_396234_397758_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_020568.1_397773_398343_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_020568.1_398834_399590_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_020568.1_399669_401058_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_020568.1_401142_401241_+	NA	NA|440aa|up_0|NC_020568.1_401904_403224_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_020568.1_403555_404512_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_020568.1_404629_405292_-	NA	NA|136aa|down_2|NC_020568.1_405434_405842_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_020568.1_406354_406933_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_020568.1_406932_408201_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_020568.1_408238_409705_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_020568.1_409729_411271_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_020568.1_411383_411920_-	NA	NA|235aa|down_8|NC_020568.1_412311_413016_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_020568.1_413414_413687_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	3	754596-754678	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_020568.1_741209_741416_+,NA|34aa|down_1|NC_020568.1_756333_756435_+,NA|52aa|down_8|NC_020568.1_764281_764437_+	NA|69aa|up_9|NC_020568.1_741209_741416_+	NA	NA|237aa|up_8|NC_020568.1_741503_742214_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_020568.1_742197_743202_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_020568.1_743675_745616_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_020568.1_745885_747769_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_020568.1_747780_749562_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_020568.1_749783_750761_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_020568.1_750753_752268_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_020568.1_752507_753566_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_020568.1_753904_754447_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_020568.1_755325_756243_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_020568.1_756333_756435_+	NA	NA|502aa|down_2|NC_020568.1_756512_758018_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_020568.1_758358_758859_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_020568.1_758878_759745_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_020568.1_760545_760944_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_020568.1_760906_763012_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_020568.1_763129_764101_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_020568.1_764281_764437_+	NA	NA|324aa|down_9|NC_020568.1_764475_765447_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	4	795543-795621	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	795567-795597|795567-795597|795567-795597	NC_020568.1_287382-287352|NC_020568.1_287327-287297|NC_020568.1_1631408-1631438	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_020568.1_786419_786524_+,NA|36aa|up_5|NC_020568.1_787956_788064_+,NA|48aa|down_5|NC_020568.1_800945_801089_-	NA|191aa|up_9|NC_020568.1_782860_783433_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_020568.1_783846_786378_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_020568.1_786419_786524_+	NA	NA|370aa|up_6|NC_020568.1_786692_787803_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_020568.1_787956_788064_+	NA	NA|280aa|up_4|NC_020568.1_788211_789051_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_020568.1_789224_789875_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_020568.1_789871_790108_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_020568.1_790376_792362_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_020568.1_792369_795216_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_020568.1_795879_796812_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_020568.1_796817_797657_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_020568.1_797664_798150_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_020568.1_798157_799597_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_020568.1_799663_800599_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|48aa|down_5|NC_020568.1_800945_801089_-	NA	NA|304aa|down_6|NC_020568.1_801543_802455_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|NC_020568.1_802451_803447_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|NC_020568.1_803557_804502_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|NC_020568.1_804967_805555_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	5	852436-852517	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_020568.1_848601_848979_+,NA	NA|180aa|up_9|NC_020568.1_842671_843211_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_020568.1_843361_843682_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_020568.1_843825_844182_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_020568.1_844339_844720_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_020568.1_845620_846706_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_020568.1_846702_848595_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_020568.1_848601_848979_+	NA	NA|261aa|up_2|NC_020568.1_849129_849912_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_020568.1_850037_850769_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_020568.1_851156_851819_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_020568.1_853127_853514_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_020568.1_853506_853803_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_020568.1_854052_855078_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_020568.1_855070_855766_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_020568.1_855783_856605_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_020568.1_856958_857153_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_020568.1_857386_858238_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_020568.1_858565_859327_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_020568.1_859424_860732_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_020568.1_860837_862088_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	6	1327147-1327236	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|78aa|up_9|NC_020568.1_1316251_1316485_+,NA|33aa|up_5|NC_020568.1_1319476_1319575_+,NA|56aa|down_8|NC_020568.1_1340061_1340229_+	NA|78aa|up_9|NC_020568.1_1316251_1316485_+	NA	NA|80aa|up_8|NC_020568.1_1316621_1316861_+	pfam05979, DUF896, Bacterial protein of unknown function (DUF896)	NA|663aa|up_7|NC_020568.1_1316981_1318970_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_6|NC_020568.1_1319247_1319490_+	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown]	NA|33aa|up_5|NC_020568.1_1319476_1319575_+	NA	NA|156aa|up_4|NC_020568.1_1319668_1320136_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_3|NC_020568.1_1320259_1321381_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_2|NC_020568.1_1321384_1324414_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_020568.1_1324484_1324847_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_0|NC_020568.1_1325050_1326697_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|down_0|NC_020568.1_1327587_1330293_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|down_1|NC_020568.1_1330472_1330940_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|down_2|NC_020568.1_1331146_1331443_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|NC_020568.1_1331818_1332427_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|664aa|down_4|NC_020568.1_1332632_1334624_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_5|NC_020568.1_1334623_1337026_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|487aa|down_6|NC_020568.1_1337275_1338736_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_7|NC_020568.1_1339235_1340087_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|56aa|down_8|NC_020568.1_1340061_1340229_+	NA	NA|403aa|down_9|NC_020568.1_1340221_1341430_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	7	1596926-1597010	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1596952-1596984|1596952-1596984	NC_020568.1_801101-801133|NC_020568.1_801160-801192	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_020568.1_1586135_1586819_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_020568.1_1587062_1587239_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_020568.1_1587531_1588878_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_020568.1_1588884_1589637_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_020568.1_1589638_1590577_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_020568.1_1590580_1591720_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_020568.1_1591855_1593688_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_020568.1_1593756_1594383_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_020568.1_1594414_1595392_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_020568.1_1595492_1596617_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_020568.1_1597182_1599006_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_020568.1_1599351_1599603_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_020568.1_1599647_1600622_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_020568.1_1600678_1602880_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_020568.1_1602884_1603346_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_020568.1_1603437_1604124_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_020568.1_1604163_1604880_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_020568.1_1604882_1605236_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_020568.1_1605236_1605821_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_020568.1_1605810_1606380_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	8	2155867-2155947	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_020568.1_2151729_2152107_-,NA|35aa|down_0|NC_020568.1_2156282_2156387_-,NA|53aa|down_2|NC_020568.1_2157066_2157225_+	NA|313aa|up_9|NC_020568.1_2144444_2145383_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_020568.1_2145818_2146484_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_020568.1_2146635_2146956_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_020568.1_2146957_2147935_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_020568.1_2148889_2149552_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_020568.1_2149939_2150671_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_020568.1_2150796_2151579_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_020568.1_2151729_2152107_-	NA	NA|631aa|up_1|NC_020568.1_2152113_2154006_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_020568.1_2154002_2155088_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_020568.1_2156282_2156387_-	NA	NA|57aa|down_1|NC_020568.1_2156903_2157074_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NC_020568.1_2157066_2157225_+	NA	NA|286aa|down_3|NC_020568.1_2157882_2158740_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_020568.1_2158807_2159590_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NC_020568.1_2159821_2161627_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NC_020568.1_2162307_2163846_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NC_020568.1_2163880_2166013_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NC_020568.1_2166024_2166459_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NC_020568.1_2166458_2167565_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	9	2168188-2168273	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_9|NC_020568.1_2156282_2156387_-,NA|53aa|up_7|NC_020568.1_2157066_2157225_+,NA	NA|35aa|up_9|NC_020568.1_2156282_2156387_-	NA	NA|57aa|up_8|NC_020568.1_2156903_2157074_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NC_020568.1_2157066_2157225_+	NA	NA|286aa|up_6|NC_020568.1_2157882_2158740_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_020568.1_2158807_2159590_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_020568.1_2159821_2161627_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_020568.1_2162307_2163846_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_020568.1_2163880_2166013_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_020568.1_2166024_2166459_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_020568.1_2166458_2167565_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_020568.1_2175606_2176962_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_020568.1_2176988_2177921_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_020568.1_2177922_2178732_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_020568.1_2178920_2179829_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_020568.1_2186069_2187134_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NC_020568.1_2189047_2189521_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NC_020568.1_2189619_2190963_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NC_020568.1_2191139_2191823_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_020568.1_2191841_2193029_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_020568.1_2193072_2193588_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000383005.1_ASM38300v1	NC_020568	Staphylococcus aureus subsp. aureus ST228, complete genome	10	2276231-2276311	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286|2276256-2276286	NC_020568.1_808247-808277|NC_020568.1_808303-808333|NC_020568.1_808359-808389|NC_020568.1_65643-65673|NC_020568.1_363205-363175|NC_020568.1_629387-629357|NC_020568.1_808414-808444|NC_020568.1_852771-852801|NC_020568.1_1121126-1121096|NC_020568.1_1327168-1327138|NC_020568.1_1415488-1415518|NC_020568.1_1611620-1611590|NC_020568.1_1928939-1928969|NC_020568.1_2265455-2265485|NC_020568.1_2440772-2440802	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_020568.1_2266764_2266929_+,NA|106aa|up_8|NC_020568.1_2267173_2267491_+,NA|84aa|up_5|NC_020568.1_2272612_2272864_+,NA|62aa|up_0|NC_020568.1_2276003_2276189_+,NA	NA|55aa|up_9|NC_020568.1_2266764_2266929_+	NA	NA|106aa|up_8|NC_020568.1_2267173_2267491_+	NA	NA|1056aa|up_7|NC_020568.1_2267674_2270842_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_020568.1_2270958_2272224_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_020568.1_2272612_2272864_+	NA	NA|255aa|up_4|NC_020568.1_2272855_2273620_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_020568.1_2273781_2274222_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_020568.1_2274214_2275426_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_020568.1_2275527_2275878_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_020568.1_2276003_2276189_+	NA	NA|341aa|down_0|NC_020568.1_2276454_2277477_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_020568.1_2277496_2278096_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_020568.1_2278102_2278336_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_020568.1_2278341_2278788_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_020568.1_2278801_2279287_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_020568.1_2279283_2280543_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_020568.1_2280605_2281100_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_020568.1_2281101_2281608_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_020568.1_2281638_2282643_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_020568.1_2282812_2283418_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
