bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164296|33|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	801171	801139	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	801139-801171	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164296|33|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	801230	801198	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	801198-801230	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164296|33|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	1415612	1415580	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1415580-1415612	ATTGGGAATACAATTTCTCTTTGTTGGGGTCCA	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	5.1|795605|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	100.00	31	0	0	1	31	287411	287381	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	9e-09	50.7	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	287381-287411	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	0
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	5.1|795605|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	287356	287326	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	287326-287356	GGTAATGCAAGTTGGCGGGGCCCCAACACAG	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	5.1|795605|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	1631544	1631574	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	1631544-1631574	CTGTGTTGGGGCCCCGCCAACTTCCATTGCC	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	8.1|1597088|33|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.97	33	1	0	1	33	801139	801171	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	801139-801171	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	8.1|1597088|33|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.97	33	1	0	1	33	801198	801230	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	801198-801230	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808383	808413	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808383-808413	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808439	808469	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808439-808469	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808495	808525	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808495-808525	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	65763	65793	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	65763-65793	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	363196	363166	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	363166-363196	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	629320	629290	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	629290-629320	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	808550	808580	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808550-808580	CACATTATCGTAAGCTGACTTTCCGTCAGCT	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	852907	852937	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	852907-852937	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1121262	1121232	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1121232-1121262	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1327304	1327274	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1327274-1327304	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1415624	1415654	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1415624-1415654	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1611756	1611726	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1611726-1611756	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1929076	1929106	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1929076-1929106	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	2265588	2265618	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2265588-2265618	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276389|31|NC_020566|CRISPRCasFinder	NC_020566.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	2440905	2440935	164270-164354|242091-242193|403429-403530|754634-754716|795581-795659|852572-852653|1327283-1327372|1597062-1597146|2156002-2156082|2168323-2168408|2276364-2276444	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2440905-2440935	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
