assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	1	164270-164354	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	164296-164328|164296-164328|164296-164328	NC_020566.1_801171-801139|NC_020566.1_801230-801198|NC_020566.1_1415612-1415580	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_020566.1_153415_154621_+,NA|68aa|down_0|NC_020566.1_164415_164619_-	NA|402aa|up_9|NC_020566.1_153415_154621_+	NA	NA|402aa|up_8|NC_020566.1_154621_155827_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_020566.1_155837_156395_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_020566.1_156394_157282_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_020566.1_157335_158598_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_020566.1_158674_159820_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_020566.1_159884_160211_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_020566.1_160217_160601_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_020566.1_161027_162515_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_020566.1_163161_164121_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_020566.1_164415_164619_-	NA	NA|171aa|down_1|NC_020566.1_164797_165310_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_020566.1_165651_166392_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_020566.1_166405_167377_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_020566.1_167373_168135_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_020566.1_168147_169179_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_020566.1_169395_169755_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_020566.1_169928_170954_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_020566.1_171339_172590_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_020566.1_173036_180212_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	2	242091-242193	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAGCCAAGCGAAACAAACGCATA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|36aa|down_0|NC_020566.1_242594_242702_-,NA|58aa|down_9|NC_020566.1_255174_255348_-	NA|323aa|up_9|NC_020566.1_227054_228023_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|165aa|up_8|NC_020566.1_228383_228878_-	COG1755, COG1755, Uncharacterized protein conserved in bacteria [Function unknown]	NA|460aa|up_7|NC_020566.1_229110_230490_+	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter	NA|253aa|up_6|NC_020566.1_230848_231607_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|519aa|up_5|NC_020566.1_231599_233156_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|323aa|up_4|NC_020566.1_233152_234121_-	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|750aa|up_3|NC_020566.1_234708_236958_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|252aa|up_2|NC_020566.1_236980_237736_+	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|588aa|up_1|NC_020566.1_238057_239821_+	COG4781, COG4781, Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	NA|115aa|up_0|NC_020566.1_239984_240329_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|36aa|down_0|NC_020566.1_242594_242702_-	NA	NA|395aa|down_1|NC_020566.1_242999_244184_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|754aa|down_2|NC_020566.1_244213_246475_-	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|404aa|down_3|NC_020566.1_246660_247872_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|502aa|down_4|NC_020566.1_247983_249489_-	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|526aa|down_5|NC_020566.1_249514_251092_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|381aa|down_6|NC_020566.1_251532_252675_+	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]	NA|492aa|down_7|NC_020566.1_252988_254464_-	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|down_8|NC_020566.1_254661_255018_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|58aa|down_9|NC_020566.1_255174_255348_-	NA
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	3	403429-403530	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_020566.1_393468_393678_-,NA|128aa|up_7|NC_020566.1_394502_394886_-,NA|33aa|up_1|NC_020566.1_401133_401232_+,NA|221aa|down_1|NC_020566.1_404620_405283_-,NA|179aa|down_7|NC_020566.1_411374_411911_-	NA|70aa|up_9|NC_020566.1_393468_393678_-	NA	NA|194aa|up_8|NC_020566.1_393855_394437_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_020566.1_394502_394886_-	NA	NA|209aa|up_6|NC_020566.1_395155_395782_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_020566.1_396225_397749_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_020566.1_397764_398334_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_020566.1_398825_399581_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_020566.1_399660_401049_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_020566.1_401133_401232_+	NA	NA|440aa|up_0|NC_020566.1_401895_403215_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_020566.1_403546_404503_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_020566.1_404620_405283_-	NA	NA|136aa|down_2|NC_020566.1_405425_405833_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_020566.1_406345_406924_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_020566.1_406923_408192_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_020566.1_408229_409696_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_020566.1_409720_411262_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_020566.1_411374_411911_-	NA	NA|235aa|down_8|NC_020566.1_412302_413007_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_020566.1_413405_413678_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	4	754634-754716	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_020566.1_741247_741454_+,NA|34aa|down_1|NC_020566.1_756371_756473_+,NA|52aa|down_8|NC_020566.1_764319_764475_+	NA|69aa|up_9|NC_020566.1_741247_741454_+	NA	NA|237aa|up_8|NC_020566.1_741541_742252_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_020566.1_742235_743240_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_020566.1_743713_745654_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_020566.1_745923_747807_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_020566.1_747818_749600_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_020566.1_749821_750799_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_020566.1_750791_752306_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_020566.1_752545_753604_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_020566.1_753942_754485_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_020566.1_755363_756281_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_020566.1_756371_756473_+	NA	NA|502aa|down_2|NC_020566.1_756550_758056_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_020566.1_758396_758897_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_020566.1_758916_759783_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_020566.1_760583_760982_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_020566.1_760944_763050_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_020566.1_763167_764139_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_020566.1_764319_764475_+	NA	NA|324aa|down_9|NC_020566.1_764513_765485_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	5	795581-795659	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	795605-795635|795605-795635|795605-795635	NC_020566.1_287411-287381|NC_020566.1_287356-287326|NC_020566.1_1631544-1631574	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_020566.1_786457_786562_+,NA|36aa|up_5|NC_020566.1_787994_788102_+,NA	NA|191aa|up_9|NC_020566.1_782898_783471_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_020566.1_783884_786416_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_020566.1_786457_786562_+	NA	NA|370aa|up_6|NC_020566.1_786730_787841_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_020566.1_787994_788102_+	NA	NA|280aa|up_4|NC_020566.1_788249_789089_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_020566.1_789262_789913_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_020566.1_789909_790146_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_020566.1_790414_792400_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_020566.1_792407_795254_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_020566.1_795917_796850_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_020566.1_796855_797695_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_020566.1_797702_798188_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_020566.1_798195_799635_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_020566.1_799701_800637_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_020566.1_801581_802493_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_020566.1_802489_803485_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_020566.1_803595_804540_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_020566.1_805103_805691_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_020566.1_805933_806836_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	6	852572-852653	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_020566.1_848737_849115_+,NA	NA|180aa|up_9|NC_020566.1_842807_843347_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_020566.1_843497_843818_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_020566.1_843961_844318_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_020566.1_844475_844856_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_020566.1_845756_846842_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_020566.1_846838_848731_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_020566.1_848737_849115_+	NA	NA|261aa|up_2|NC_020566.1_849265_850048_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_020566.1_850173_850905_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_020566.1_851292_851955_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_020566.1_853263_853650_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_020566.1_853642_853939_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_020566.1_854188_855214_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_020566.1_855206_855902_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_020566.1_855919_856741_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_020566.1_857094_857289_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_020566.1_857522_858374_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_020566.1_858701_859463_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_020566.1_859560_860868_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_020566.1_860973_862224_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	7	1327283-1327372	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|78aa|up_9|NC_020566.1_1316387_1316621_+,NA|33aa|up_5|NC_020566.1_1319612_1319711_+,NA|56aa|down_8|NC_020566.1_1340197_1340365_+	NA|78aa|up_9|NC_020566.1_1316387_1316621_+	NA	NA|80aa|up_8|NC_020566.1_1316757_1316997_+	pfam05979, DUF896, Bacterial protein of unknown function (DUF896)	NA|663aa|up_7|NC_020566.1_1317117_1319106_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_6|NC_020566.1_1319383_1319626_+	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown]	NA|33aa|up_5|NC_020566.1_1319612_1319711_+	NA	NA|156aa|up_4|NC_020566.1_1319804_1320272_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_3|NC_020566.1_1320395_1321517_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_2|NC_020566.1_1321520_1324550_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_020566.1_1324620_1324983_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_0|NC_020566.1_1325186_1326833_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|down_0|NC_020566.1_1327723_1330429_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|down_1|NC_020566.1_1330608_1331076_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|down_2|NC_020566.1_1331282_1331579_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|NC_020566.1_1331954_1332563_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|664aa|down_4|NC_020566.1_1332768_1334760_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_5|NC_020566.1_1334759_1337162_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|487aa|down_6|NC_020566.1_1337411_1338872_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_7|NC_020566.1_1339371_1340223_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|56aa|down_8|NC_020566.1_1340197_1340365_+	NA	NA|403aa|down_9|NC_020566.1_1340357_1341566_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	8	1597062-1597146	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1597088-1597120|1597088-1597120	NC_020566.1_801139-801171|NC_020566.1_801198-801230	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_020566.1_1586271_1586955_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_020566.1_1587198_1587375_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_020566.1_1587667_1589014_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_020566.1_1589020_1589773_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_020566.1_1589774_1590713_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_020566.1_1590716_1591856_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_020566.1_1591991_1593824_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_020566.1_1593892_1594519_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_020566.1_1594550_1595528_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_020566.1_1595628_1596753_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_020566.1_1597318_1599142_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_020566.1_1599487_1599739_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_020566.1_1599783_1600758_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_020566.1_1600814_1603016_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_020566.1_1603020_1603482_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_020566.1_1603573_1604260_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_020566.1_1604299_1605016_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_020566.1_1605018_1605372_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_020566.1_1605372_1605957_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_020566.1_1605946_1606516_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	9	2156002-2156082	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_020566.1_2151864_2152242_-,NA|35aa|down_0|NC_020566.1_2156417_2156522_-,NA|53aa|down_1|NC_020566.1_2157201_2157360_+	NA|313aa|up_9|NC_020566.1_2144579_2145518_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_020566.1_2145953_2146619_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_020566.1_2146770_2147091_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_020566.1_2147092_2148070_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_020566.1_2149024_2149687_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_020566.1_2150074_2150806_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_020566.1_2150931_2151714_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_020566.1_2151864_2152242_-	NA	NA|631aa|up_1|NC_020566.1_2152248_2154141_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_020566.1_2154137_2155223_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_020566.1_2156417_2156522_-	NA	NA|53aa|down_1|NC_020566.1_2157201_2157360_+	NA	NA|286aa|down_2|NC_020566.1_2158017_2158875_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_020566.1_2158942_2159725_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_020566.1_2159956_2161762_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_020566.1_2162442_2163981_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_020566.1_2164015_2166148_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_020566.1_2166159_2166594_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_020566.1_2166593_2167700_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_020566.1_2168018_2175464_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	10	2168323-2168408	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NC_020566.1_2156417_2156522_-,NA|53aa|up_7|NC_020566.1_2157201_2157360_+,NA	NA|362aa|up_9|NC_020566.1_2154137_2155223_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|up_8|NC_020566.1_2156417_2156522_-	NA	NA|53aa|up_7|NC_020566.1_2157201_2157360_+	NA	NA|286aa|up_6|NC_020566.1_2158017_2158875_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_020566.1_2158942_2159725_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_020566.1_2159956_2161762_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_020566.1_2162442_2163981_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_020566.1_2164015_2166148_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_020566.1_2166159_2166594_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_020566.1_2166593_2167700_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_020566.1_2175741_2177097_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_020566.1_2177123_2178056_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_020566.1_2178057_2178867_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_020566.1_2179055_2179964_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_020566.1_2186203_2187268_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NC_020566.1_2189181_2189655_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NC_020566.1_2189753_2191097_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NC_020566.1_2191273_2191957_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_020566.1_2191975_2193163_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_020566.1_2193206_2193722_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000382985.1_ASM38298v1	NC_020566	Staphylococcus aureus subsp. aureus ST228, complete genome	11	2276364-2276444	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419|2276389-2276419	NC_020566.1_808383-808413|NC_020566.1_808439-808469|NC_020566.1_808495-808525|NC_020566.1_65763-65793|NC_020566.1_363196-363166|NC_020566.1_629320-629290|NC_020566.1_808550-808580|NC_020566.1_852907-852937|NC_020566.1_1121262-1121232|NC_020566.1_1327304-1327274|NC_020566.1_1415624-1415654|NC_020566.1_1611756-1611726|NC_020566.1_1929076-1929106|NC_020566.1_2265588-2265618|NC_020566.1_2440905-2440935	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_020566.1_2266897_2267062_+,NA|106aa|up_8|NC_020566.1_2267306_2267624_+,NA|84aa|up_5|NC_020566.1_2272745_2272997_+,NA|62aa|up_0|NC_020566.1_2276136_2276322_+,NA	NA|55aa|up_9|NC_020566.1_2266897_2267062_+	NA	NA|106aa|up_8|NC_020566.1_2267306_2267624_+	NA	NA|1056aa|up_7|NC_020566.1_2267807_2270975_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_020566.1_2271091_2272357_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_020566.1_2272745_2272997_+	NA	NA|255aa|up_4|NC_020566.1_2272988_2273753_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_020566.1_2273914_2274355_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_020566.1_2274347_2275559_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_020566.1_2275660_2276011_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_020566.1_2276136_2276322_+	NA	NA|341aa|down_0|NC_020566.1_2276587_2277610_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_020566.1_2277629_2278229_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_020566.1_2278235_2278469_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_020566.1_2278474_2278921_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_020566.1_2278934_2279420_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_020566.1_2279416_2280676_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_020566.1_2280738_2281233_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_020566.1_2281234_2281741_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_020566.1_2281771_2282776_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_020566.1_2282945_2283551_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
