bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164302|33|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	801230	801198	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	801198-801230	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164302|33|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	801289	801257	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	801257-801289	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	1.1|164302|33|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.94	33	2	0	1	33	1415614	1415582	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	9e-08	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1415582-1415614	ATTGGGAATACAATTTCTCTTTGTTGGGGTCCA	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	4.1|795664|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	100.00	31	0	0	1	31	287504	287474	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	9e-09	50.7	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	287474-287504	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	0
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	4.1|795664|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	287449	287419	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	287419-287449	GGTAATGCAAGTTGGCGGGGCCCCAACACAG	1
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	7.1|1597083|33|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.97	33	1	0	1	33	801198	801230	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	801198-801230	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	7.1|1597083|33|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.97	33	1	0	1	33	801257	801289	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	801257-801289	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	8.2|1631594|22|NC_020533|PILER-CR	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	90.91	22	2	0	1	22	1115842	1115821	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	0.009	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	1115821-1115842	AGAAATTGGATCACCAATTTCA	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808442	808472	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808442-808472	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808498	808528	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808498-808528	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	96.77	31	1	0	1	31	808554	808584	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808554-808584	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	65766	65796	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	65766-65796	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	363289	363259	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	363259-363289	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	629379	629349	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	629349-629379	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	808609	808639	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	808609-808639	CACATTATCGTAAGCTGACTTTCCGTCAGCT	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	852966	852996	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	852966-852996	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1121264	1121234	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1121234-1121264	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1327306	1327276	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1327276-1327306	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1415626	1415656	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1415626-1415656	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1611751	1611721	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1611721-1611751	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	1929067	1929097	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1929067-1929097	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	2265967	2265997	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2265967-2265997	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11.1|2276768|31|NC_020533|CRISPRCasFinder	NC_020533.1	Staphylococcus aureus subsp. aureus ST228, complete genome	93.55	31	2	0	1	31	2441284	2441314	164276-164360|403522-403623|754693-754775|795640-795718|852631-852712|1327285-1327374|1597057-1597141|1631487-1631634|2156381-2156461|2168702-2168787|2276743-2276823	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2441284-2441314	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
