assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	1	164276-164360	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	164302-164334|164302-164334|164302-164334	NC_020533.1_801230-801198|NC_020533.1_801289-801257|NC_020533.1_1415614-1415582	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_020533.1_153421_154627_+,NA|68aa|down_0|NC_020533.1_164421_164625_-	NA|402aa|up_9|NC_020533.1_153421_154627_+	NA	NA|402aa|up_8|NC_020533.1_154627_155833_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_020533.1_155843_156401_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_020533.1_156400_157288_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_020533.1_157341_158604_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_020533.1_158680_159826_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_020533.1_159890_160217_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_020533.1_160223_160607_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_020533.1_161033_162521_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_020533.1_163167_164127_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_020533.1_164421_164625_-	NA	NA|171aa|down_1|NC_020533.1_164803_165316_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_020533.1_165657_166398_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_020533.1_166411_167383_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_020533.1_167379_168141_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_020533.1_168153_169185_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_020533.1_169401_169761_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_020533.1_169934_170960_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_020533.1_171345_172596_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_020533.1_173042_180218_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	2	403522-403623	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_020533.1_393561_393771_-,NA|128aa|up_7|NC_020533.1_394595_394979_-,NA|33aa|up_1|NC_020533.1_401226_401325_+,NA|221aa|down_1|NC_020533.1_404713_405376_-,NA|179aa|down_7|NC_020533.1_411467_412004_-	NA|70aa|up_9|NC_020533.1_393561_393771_-	NA	NA|194aa|up_8|NC_020533.1_393948_394530_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_020533.1_394595_394979_-	NA	NA|209aa|up_6|NC_020533.1_395248_395875_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_020533.1_396318_397842_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_020533.1_397857_398427_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_020533.1_398918_399674_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_020533.1_399753_401142_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_020533.1_401226_401325_+	NA	NA|440aa|up_0|NC_020533.1_401988_403308_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_020533.1_403639_404596_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_020533.1_404713_405376_-	NA	NA|136aa|down_2|NC_020533.1_405518_405926_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_020533.1_406438_407017_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_020533.1_407016_408285_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_020533.1_408322_409789_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_020533.1_409813_411355_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_020533.1_411467_412004_-	NA	NA|235aa|down_8|NC_020533.1_412395_413100_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_020533.1_413498_413771_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	3	754693-754775	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_020533.1_741306_741513_+,NA|34aa|down_1|NC_020533.1_756430_756532_+,NA|52aa|down_8|NC_020533.1_764378_764534_+	NA|69aa|up_9|NC_020533.1_741306_741513_+	NA	NA|237aa|up_8|NC_020533.1_741600_742311_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_020533.1_742294_743299_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_020533.1_743772_745713_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_020533.1_745982_747866_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_020533.1_747877_749659_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_020533.1_749880_750858_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_020533.1_750850_752365_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_020533.1_752604_753663_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_020533.1_754001_754544_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_020533.1_755422_756340_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_020533.1_756430_756532_+	NA	NA|502aa|down_2|NC_020533.1_756609_758115_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_020533.1_758455_758956_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_020533.1_758975_759842_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_020533.1_760642_761041_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_020533.1_761003_763109_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_020533.1_763226_764198_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_020533.1_764378_764534_+	NA	NA|324aa|down_9|NC_020533.1_764572_765544_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	4	795640-795718	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	795664-795694|795664-795694	NC_020533.1_287504-287474|NC_020533.1_287449-287419	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_020533.1_786516_786621_+,NA|36aa|up_5|NC_020533.1_788053_788161_+,NA	NA|191aa|up_9|NC_020533.1_782957_783530_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_020533.1_783943_786475_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_020533.1_786516_786621_+	NA	NA|370aa|up_6|NC_020533.1_786789_787900_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_020533.1_788053_788161_+	NA	NA|280aa|up_4|NC_020533.1_788308_789148_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_020533.1_789321_789972_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_020533.1_789968_790205_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_020533.1_790473_792459_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_020533.1_792466_795313_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_020533.1_795976_796909_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_020533.1_796914_797754_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_020533.1_797761_798247_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_020533.1_798254_799694_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_020533.1_799760_800696_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_020533.1_801640_802552_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_020533.1_802548_803544_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_020533.1_803654_804599_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_020533.1_805162_805750_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_020533.1_805992_806895_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	5	852631-852712	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_020533.1_848796_849174_+,NA	NA|180aa|up_9|NC_020533.1_842866_843406_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_020533.1_843556_843877_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_020533.1_844020_844377_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_020533.1_844534_844915_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_020533.1_845815_846901_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_020533.1_846897_848790_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_020533.1_848796_849174_+	NA	NA|261aa|up_2|NC_020533.1_849324_850107_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_020533.1_850232_850964_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_020533.1_851351_852014_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_020533.1_853322_853709_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_020533.1_853701_853998_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_020533.1_854247_855273_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_020533.1_855265_855961_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_020533.1_855978_856800_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_020533.1_857153_857348_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_020533.1_857581_858433_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_020533.1_858760_859522_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_020533.1_859619_860927_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_020533.1_861032_862283_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	6	1327285-1327374	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|78aa|up_9|NC_020533.1_1316389_1316623_+,NA|33aa|up_5|NC_020533.1_1319614_1319713_+,NA|56aa|down_8|NC_020533.1_1340199_1340367_+	NA|78aa|up_9|NC_020533.1_1316389_1316623_+	NA	NA|80aa|up_8|NC_020533.1_1316759_1316999_+	pfam05979, DUF896, Bacterial protein of unknown function (DUF896)	NA|663aa|up_7|NC_020533.1_1317119_1319108_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_6|NC_020533.1_1319385_1319628_+	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown]	NA|33aa|up_5|NC_020533.1_1319614_1319713_+	NA	NA|156aa|up_4|NC_020533.1_1319806_1320274_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_3|NC_020533.1_1320397_1321519_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_2|NC_020533.1_1321522_1324552_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_020533.1_1324622_1324985_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_0|NC_020533.1_1325188_1326835_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|down_0|NC_020533.1_1327725_1330431_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|down_1|NC_020533.1_1330610_1331078_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|down_2|NC_020533.1_1331284_1331581_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|NC_020533.1_1331956_1332565_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|664aa|down_4|NC_020533.1_1332770_1334762_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_5|NC_020533.1_1334761_1337164_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|487aa|down_6|NC_020533.1_1337413_1338874_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_7|NC_020533.1_1339373_1340225_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|56aa|down_8|NC_020533.1_1340199_1340367_+	NA	NA|403aa|down_9|NC_020533.1_1340359_1341568_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	7	1597057-1597141	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1597083-1597115|1597083-1597115	NC_020533.1_801198-801230|NC_020533.1_801257-801289	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_020533.1_1586266_1586950_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_020533.1_1587193_1587370_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_020533.1_1587662_1589009_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_020533.1_1589015_1589768_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_020533.1_1589769_1590708_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_020533.1_1590711_1591851_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_020533.1_1591986_1593819_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_020533.1_1593887_1594514_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_020533.1_1594545_1595523_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_020533.1_1595623_1596748_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_020533.1_1597313_1599137_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_020533.1_1599482_1599734_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_020533.1_1599778_1600753_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_020533.1_1600809_1603011_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_020533.1_1603015_1603477_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_020533.1_1603568_1604255_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_020533.1_1604294_1605011_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_020533.1_1605013_1605367_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_020533.1_1605367_1605952_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_020533.1_1605941_1606511_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	8	1631487-1631634	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	1	1631594-1631615	NC_020533.1_1115842-1115821	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NC_020533.1_1635624_1635771_-,NA|43aa|down_8|NC_020533.1_1638807_1638936_-	NA|208aa|up_9|NC_020533.1_1620156_1620780_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NC_020533.1_1620779_1622048_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NC_020533.1_1622059_1622983_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NC_020533.1_1622985_1623624_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NC_020533.1_1623908_1624217_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NC_020533.1_1624231_1624660_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NC_020533.1_1624663_1624924_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NC_020533.1_1624986_1627617_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NC_020533.1_1627959_1630437_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NC_020533.1_1630438_1631107_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_020533.1_1631801_1632920_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NC_020533.1_1632920_1634063_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NC_020533.1_1634374_1635388_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NC_020533.1_1635624_1635771_-	NA	NA|61aa|down_4|NC_020533.1_1635810_1635993_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NC_020533.1_1636092_1636515_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NC_020533.1_1636599_1637874_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NC_020533.1_1638034_1638808_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NC_020533.1_1638807_1638936_-	NA	NA|589aa|down_9|NC_020533.1_1639268_1641035_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	9	2156381-2156461	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_020533.1_2152243_2152621_-,NA|35aa|down_0|NC_020533.1_2156796_2156901_-,NA|53aa|down_1|NC_020533.1_2157580_2157739_+	NA|313aa|up_9|NC_020533.1_2144958_2145897_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_020533.1_2146332_2146998_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_020533.1_2147149_2147470_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_020533.1_2147471_2148449_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_020533.1_2149403_2150066_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_020533.1_2150453_2151185_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_020533.1_2151310_2152093_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_020533.1_2152243_2152621_-	NA	NA|631aa|up_1|NC_020533.1_2152627_2154520_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_020533.1_2154516_2155602_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_020533.1_2156796_2156901_-	NA	NA|53aa|down_1|NC_020533.1_2157580_2157739_+	NA	NA|286aa|down_2|NC_020533.1_2158396_2159254_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_020533.1_2159321_2160104_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_020533.1_2160335_2162141_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_020533.1_2162821_2164360_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_020533.1_2164394_2166527_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_020533.1_2166538_2166973_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_020533.1_2166972_2168079_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_020533.1_2168397_2175843_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	10	2168702-2168787	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NC_020533.1_2156796_2156901_-,NA|53aa|up_7|NC_020533.1_2157580_2157739_+,NA	NA|362aa|up_9|NC_020533.1_2154516_2155602_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|up_8|NC_020533.1_2156796_2156901_-	NA	NA|53aa|up_7|NC_020533.1_2157580_2157739_+	NA	NA|286aa|up_6|NC_020533.1_2158396_2159254_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_020533.1_2159321_2160104_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_020533.1_2160335_2162141_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_020533.1_2162821_2164360_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_020533.1_2164394_2166527_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_020533.1_2166538_2166973_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_020533.1_2166972_2168079_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_020533.1_2176120_2177476_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_020533.1_2177502_2178435_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_020533.1_2178436_2179246_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_020533.1_2179434_2180343_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_020533.1_2186583_2187648_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NC_020533.1_2189561_2190035_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NC_020533.1_2190133_2191477_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NC_020533.1_2191653_2192337_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_020533.1_2192355_2193543_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_020533.1_2193586_2194102_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000382965.1_ASM38296v1	NC_020533	Staphylococcus aureus subsp. aureus ST228, complete genome	11	2276743-2276823	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798|2276768-2276798	NC_020533.1_808442-808472|NC_020533.1_808498-808528|NC_020533.1_808554-808584|NC_020533.1_65766-65796|NC_020533.1_363289-363259|NC_020533.1_629379-629349|NC_020533.1_808609-808639|NC_020533.1_852966-852996|NC_020533.1_1121264-1121234|NC_020533.1_1327306-1327276|NC_020533.1_1415626-1415656|NC_020533.1_1611751-1611721|NC_020533.1_1929067-1929097|NC_020533.1_2265967-2265997|NC_020533.1_2441284-2441314	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_020533.1_2267276_2267441_+,NA|106aa|up_8|NC_020533.1_2267685_2268003_+,NA|84aa|up_5|NC_020533.1_2273124_2273376_+,NA|62aa|up_0|NC_020533.1_2276515_2276701_+,NA	NA|55aa|up_9|NC_020533.1_2267276_2267441_+	NA	NA|106aa|up_8|NC_020533.1_2267685_2268003_+	NA	NA|1056aa|up_7|NC_020533.1_2268186_2271354_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_020533.1_2271470_2272736_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_020533.1_2273124_2273376_+	NA	NA|255aa|up_4|NC_020533.1_2273367_2274132_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_020533.1_2274293_2274734_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_020533.1_2274726_2275938_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_020533.1_2276039_2276390_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_020533.1_2276515_2276701_+	NA	NA|341aa|down_0|NC_020533.1_2276966_2277989_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_020533.1_2278008_2278608_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_020533.1_2278614_2278848_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_020533.1_2278853_2279300_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_020533.1_2279313_2279799_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_020533.1_2279795_2281055_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_020533.1_2281117_2281612_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_020533.1_2281613_2282120_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_020533.1_2282150_2283155_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_020533.1_2283324_2283930_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
