assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000380325.1_ASM38032v1	NC_021151	Salmonella enterica subsp. enterica serovar Typhimurium str. U288, complete sequence	1	2883507-2883616	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|80aa|up_9|NC_021151.1_2873741_2873981_-,NA|198aa|up_4|NC_021151.1_2877379_2877973_+,NA|276aa|up_2|NC_021151.1_2879890_2880718_-,NA	NA|80aa|up_9|NC_021151.1_2873741_2873981_-	NA	NA|211aa|up_8|NC_021151.1_2874097_2874730_+	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain	NA|342aa|up_7|NC_021151.1_2874733_2875759_+	PHA02601, int, integrase; Provisional	NA|355aa|up_6|NC_021151.1_2876087_2877152_+	PRK09692, PRK09692, integrase; Provisional	NA|56aa|up_5|NC_021151.1_2877165_2877333_+	PRK09692, PRK09692, integrase; Provisional	NA|198aa|up_4|NC_021151.1_2877379_2877973_+	NA	NA|398aa|up_3|NC_021151.1_2878362_2879556_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NC_021151.1_2879890_2880718_-	NA	NA|72aa|up_1|NC_021151.1_2881168_2881384_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NC_021151.1_2881419_2883489_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NC_021151.1_2883991_2885275_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|NC_021151.1_2885319_2886138_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|NC_021151.1_2886290_2886647_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|NC_021151.1_2886741_2887026_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|NC_021151.1_2887138_2887660_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|NC_021151.1_2887656_2888031_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|NC_021151.1_2888027_2889008_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|NC_021151.1_2889018_2890032_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|NC_021151.1_2890326_2891529_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|NC_021151.1_2891602_2892238_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCF_000380325.1_ASM38032v1	NC_021151	Salmonella enterica subsp. enterica serovar Typhimurium str. U288, complete sequence	2	3074262-3075737	2,1,1,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,cas14j,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACT,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,30,28,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E:I-E	22,23,21,21,23,22	23	TypeI-E	cas3,DEDDh,DinG,cas14j,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|209aa|up_9|NC_021151.1_3065507_3066134_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|NC_021151.1_3066127_3066889_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|NC_021151.1_3066869_3067919_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|NC_021151.1_3067915_3068395_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_5|NC_021151.1_3068394_3069105_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_4|NC_021151.1_3069123_3069435_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|202aa|up_3|NC_021151.1_3070000_3070606_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NC_021151.1_3070592_3072032_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_021151.1_3072041_3072950_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NC_021151.1_3073200_3074247_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_021151.1_3075833_3076127_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_021151.1_3076126_3077047_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_021151.1_3077043_3077694_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_021151.1_3077675_3078422_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NC_021151.1_3078432_3079491_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NC_021151.1_3079504_3080065_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NC_021151.1_3080061_3081618_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NC_021151.1_3081629_3084293_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NC_021151.1_3084737_3085691_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NC_021151.1_3085778_3086513_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000380325.1_ASM38032v1	NC_021151	Salmonella enterica subsp. enterica serovar Typhimurium str. U288, complete sequence	3	3091869-3093850	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,cas14j,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	32,32,31	32	TypeI-E	cas3,DEDDh,DinG,cas14j,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NC_021151.1_3078432_3079491_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NC_021151.1_3079504_3080065_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NC_021151.1_3080061_3081618_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NC_021151.1_3081629_3084293_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NC_021151.1_3084737_3085691_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NC_021151.1_3085778_3086513_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NC_021151.1_3086588_3088301_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NC_021151.1_3088300_3090100_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NC_021151.1_3090523_3090886_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NC_021151.1_3090973_3091771_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NC_021151.1_3094146_3094818_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NC_021151.1_3094953_3096252_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NC_021151.1_3096334_3097972_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NC_021151.1_3098199_3099000_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NC_021151.1_3099767_3100064_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NC_021151.1_3100029_3100386_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NC_021151.1_3100469_3102704_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NC_021151.1_3102755_3104051_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NC_021151.1_3104108_3106865_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NC_021151.1_3106908_3108051_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
