assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	1	279491-279586	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	GGCGCACCCTGGCAGCTGCTCGCCAGG	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|577aa|up_7|NC_021054.1_269823_271554_-,NA|78aa|down_6|NC_021054.1_289091_289325_+	NA|255aa|up_9|NC_021054.1_267852_268617_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|385aa|up_8|NC_021054.1_268652_269807_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|577aa|up_7|NC_021054.1_269823_271554_-	NA	NA|422aa|up_6|NC_021054.1_271563_272829_-	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|408aa|up_5|NC_021054.1_273044_274268_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|138aa|up_4|NC_021054.1_274295_274709_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|65aa|up_3|NC_021054.1_274699_274894_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|327aa|up_2|NC_021054.1_274972_275953_-	pfam02126, PTE, Phosphotriesterase family	NA|569aa|up_1|NC_021054.1_276047_277754_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|230aa|up_0|NC_021054.1_277888_278578_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|512aa|down_0|NC_021054.1_279592_281128_-	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|483aa|down_1|NC_021054.1_281153_282602_-	pfam06762, LMF1, Lipase maturation factor	NA|1401aa|down_2|NC_021054.1_282636_286839_-	pfam11847, DUF3367, Domain of unknown function (DUF3367)	NA|58aa|down_3|NC_021054.1_286885_287059_-	pfam11021, DUF2613, Protein of unknown function (DUF2613)	NA|389aa|down_4|NC_021054.1_287173_288340_+	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|205aa|down_5|NC_021054.1_288415_289030_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|78aa|down_6|NC_021054.1_289091_289325_+	NA	NA|146aa|down_7|NC_021054.1_289332_289770_+	TIGR00028, Hypothetical_protein_Rv2872/MT2939/Mb2897	NA|281aa|down_8|NC_021054.1_289799_290642_-	pfam01575, MaoC_dehydratas, MaoC like domain	NA|455aa|down_9|NC_021054.1_290652_292017_-	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	2	333624-334423	1	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|58aa|up_0|NC_021054.1_333139_333313_-,NA|87aa|down_1|NC_021054.1_339090_339351_+	NA|398aa|up_9|NC_021054.1_323317_324511_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NC_021054.1_324546_326229_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NC_021054.1_326245_328441_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NC_021054.1_328554_329688_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NC_021054.1_329684_330305_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NC_021054.1_330401_330983_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NC_021054.1_330912_331638_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NC_021054.1_331727_332648_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NC_021054.1_332687_333116_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|NC_021054.1_333139_333313_-	NA	NA|839aa|down_0|NC_021054.1_336540_339057_-	pfam00934, PE, PE family	NA|87aa|down_1|NC_021054.1_339090_339351_+	NA	NA|537aa|down_2|NC_021054.1_339347_340958_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NC_021054.1_340981_341890_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NC_021054.1_342113_344009_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|1331aa|down_5|NC_021054.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NC_021054.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_7|NC_021054.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NC_021054.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NC_021054.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	3	335366-335937	2	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335785-335808|335830-335862|335884-335916	NC_021054.1_338570-338593|NC_021054.1_338597-338629|NC_021054.1_338651-338683	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|58aa|up_0|NC_021054.1_333139_333313_-,NA|87aa|down_1|NC_021054.1_339090_339351_+	NA|398aa|up_9|NC_021054.1_323317_324511_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NC_021054.1_324546_326229_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NC_021054.1_326245_328441_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NC_021054.1_328554_329688_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NC_021054.1_329684_330305_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NC_021054.1_330401_330983_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NC_021054.1_330912_331638_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NC_021054.1_331727_332648_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NC_021054.1_332687_333116_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|NC_021054.1_333139_333313_-	NA	NA|839aa|down_0|NC_021054.1_336540_339057_-	pfam00934, PE, PE family	NA|87aa|down_1|NC_021054.1_339090_339351_+	NA	NA|537aa|down_2|NC_021054.1_339347_340958_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NC_021054.1_340981_341890_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NC_021054.1_342113_344009_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|1331aa|down_5|NC_021054.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NC_021054.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_7|NC_021054.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NC_021054.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NC_021054.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	4	338088-338310	1	PILER-CR	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|58aa|up_0|NC_021054.1_333139_333313_-,NA|87aa|down_0|NC_021054.1_339090_339351_+	NA|398aa|up_9|NC_021054.1_323317_324511_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NC_021054.1_324546_326229_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NC_021054.1_326245_328441_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NC_021054.1_328554_329688_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NC_021054.1_329684_330305_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NC_021054.1_330401_330983_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NC_021054.1_330912_331638_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NC_021054.1_331727_332648_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NC_021054.1_332687_333116_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|NC_021054.1_333139_333313_-	NA	NA|87aa|down_0|NC_021054.1_339090_339351_+	NA	NA|537aa|down_1|NC_021054.1_339347_340958_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NC_021054.1_340981_341890_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NC_021054.1_342113_344009_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|1331aa|down_4|NC_021054.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NC_021054.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_6|NC_021054.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NC_021054.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NC_021054.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NC_021054.1_352133_353021_+	pfam14011, ESX-1_EspG, EspG family
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	5	366447-367145	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366735-366776|366810-366842	NC_021054.1_374766-374807|NC_021054.1_373581-373613	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|101aa|up_4|NC_021054.1_363459_363762_+,NA|161aa|down_1|NC_021054.1_376555_377038_-,NA|410aa|down_5|NC_021054.1_379154_380384_+	NA|401aa|up_9|NC_021054.1_356846_358049_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|262aa|up_8|NC_021054.1_358155_358941_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_7|NC_021054.1_358929_359733_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_6|NC_021054.1_359742_361140_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|76aa|up_5|NC_021054.1_363235_363463_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_021054.1_363459_363762_+	NA	NA|74aa|up_3|NC_021054.1_363809_364031_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_021054.1_364027_364453_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_021054.1_364588_365221_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_021054.1_365217_366126_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_021054.1_375896_376568_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_021054.1_376555_377038_-	NA	NA|239aa|down_2|NC_021054.1_377095_377812_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_021054.1_377913_378570_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_021054.1_378639_379131_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_021054.1_379154_380384_+	NA	NA|621aa|down_6|NC_021054.1_380538_382401_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_021054.1_382472_382859_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NC_021054.1_382861_383524_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NC_021054.1_383584_384469_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	6	631249-631386	3	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631267-631284|631267-631284|631351-631368	NC_021054.1_22465-22482|NC_021054.1_1411942-1411959|NC_021054.1_973148-973165	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|54aa|up_7|NC_021054.1_622092_622254_-,NA|61aa|up_5|NC_021054.1_622589_622772_+,NA|478aa|up_0|NC_021054.1_628264_629698_-,NA|450aa|down_1|NC_021054.1_633019_634369_-,NA|93aa|down_4|NC_021054.1_635899_636178_-	NA|530aa|up_9|NC_021054.1_618277_619867_+	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]	NA|325aa|up_8|NC_021054.1_619863_620838_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|54aa|up_7|NC_021054.1_622092_622254_-	NA	NA|106aa|up_6|NC_021054.1_622300_622618_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|61aa|up_5|NC_021054.1_622589_622772_+	NA	NA|336aa|up_4|NC_021054.1_624439_625447_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NC_021054.1_625528_626407_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NC_021054.1_626423_627218_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NC_021054.1_627214_628255_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NC_021054.1_628264_629698_-	NA	NA|221aa|down_0|NC_021054.1_632336_632999_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_1|NC_021054.1_633019_634369_-	NA	NA|381aa|down_2|NC_021054.1_634380_635523_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_3|NC_021054.1_635537_635840_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_4|NC_021054.1_635899_636178_-	NA	NA|418aa|down_5|NC_021054.1_636174_637428_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|295aa|down_6|NC_021054.1_637988_638873_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_7|NC_021054.1_638968_639871_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase	NA|138aa|down_8|NC_021054.1_640184_640598_-	COG4113, COG4113, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|89aa|down_9|NC_021054.1_640594_640861_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	7	691980-692056	3	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA,NA	NA|136aa|up_9|NC_021054.1_677875_678283_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NC_021054.1_678342_679029_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NC_021054.1_679182_681816_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NC_021054.1_681838_684226_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NC_021054.1_684363_685086_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NC_021054.1_685082_685880_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NC_021054.1_685881_686769_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NC_021054.1_686774_687989_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NC_021054.1_687985_689017_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NC_021054.1_689013_690459_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_021054.1_693191_694742_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_021054.1_694793_695186_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_021054.1_695182_695440_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_021054.1_695622_696858_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_021054.1_697108_697522_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_021054.1_697518_697755_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_021054.1_697858_698365_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_021054.1_698478_698949_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_021054.1_698992_699754_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_021054.1_699810_700122_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	8	1191198-1191306	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA,NA	NA|544aa|up_9|NC_021054.1_1180565_1182197_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NC_021054.1_1182272_1183337_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NC_021054.1_1183389_1183863_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NC_021054.1_1183896_1184760_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NC_021054.1_1184764_1185622_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NC_021054.1_1185622_1186705_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NC_021054.1_1186785_1187205_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NC_021054.1_1187316_1187883_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NC_021054.1_1187879_1188275_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NC_021054.1_1188302_1190306_-	pfam00934, PE, PE family	NA|588aa|down_0|NC_021054.1_1192391_1194155_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NC_021054.1_1194151_1194925_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NC_021054.1_1194936_1195974_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NC_021054.1_1196160_1196997_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NC_021054.1_1197112_1197964_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NC_021054.1_1198037_1199255_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NC_021054.1_1199307_1200252_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NC_021054.1_1200648_1201542_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NC_021054.1_1201598_1202993_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NC_021054.1_1203194_1203917_+	pfam06271, RDD, RDD family
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	9	1572056-1573128	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1572256-1572277	NC_021054.1_1211945-1211924	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|74aa|up_8|NC_021054.1_1563356_1563578_-,NA|106aa|up_7|NC_021054.1_1563819_1564137_+,NA	NA|540aa|up_9|NC_021054.1_1561639_1563259_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|74aa|up_8|NC_021054.1_1563356_1563578_-	NA	NA|106aa|up_7|NC_021054.1_1563819_1564137_+	NA	NA|209aa|up_6|NC_021054.1_1564271_1564898_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NC_021054.1_1564963_1565296_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NC_021054.1_1565311_1566568_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NC_021054.1_1566695_1567907_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NC_021054.1_1567979_1569458_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NC_021054.1_1569454_1570840_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NC_021054.1_1570917_1571952_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NC_021054.1_1573982_1574384_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NC_021054.1_1574380_1574638_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NC_021054.1_1574720_1575680_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NC_021054.1_1575704_1576667_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NC_021054.1_1576800_1577403_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NC_021054.1_1577483_1579451_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NC_021054.1_1579468_1580293_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NC_021054.1_1580461_1580944_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NC_021054.1_1581015_1581840_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NC_021054.1_1582036_1582975_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	10	2088096-2088350	4	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088177-2088194|2088177-2088194|2088267-2088284	NC_021054.1_401062-401045|NC_021054.1_607411-607394|NC_021054.1_3449877-3449860	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|67aa|up_3|NC_021054.1_2084365_2084566_+,NA|88aa|up_0|NC_021054.1_2087455_2087719_-,NA	NA|226aa|up_9|NC_021054.1_2074647_2075325_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_8|NC_021054.1_2075683_2078509_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_7|NC_021054.1_2078735_2079596_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_6|NC_021054.1_2079636_2080503_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_5|NC_021054.1_2080507_2082394_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_4|NC_021054.1_2082409_2084443_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|67aa|up_3|NC_021054.1_2084365_2084566_+	NA	NA|742aa|up_2|NC_021054.1_2084562_2086788_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_021054.1_2087063_2087459_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_021054.1_2087455_2087719_-	NA	NA|346aa|down_0|NC_021054.1_2089487_2090525_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_021054.1_2090524_2091892_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NC_021054.1_2092065_2093502_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NC_021054.1_2093537_2094989_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_021054.1_2095018_2095969_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_021054.1_2095983_2096400_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_021054.1_2096677_2097100_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NC_021054.1_2097148_2097451_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_021054.1_2097447_2097762_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_021054.1_2097761_2099495_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	11	2165682-2165790	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	GCCCCGGAACTACTCACACCCAAACCGATGGCGGGAA	37	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|136aa|up_2|NC_021054.1_2159724_2160132_-,NA|64aa|down_0|NC_021054.1_2167043_2167235_+,NA|127aa|down_7|NC_021054.1_2176355_2176736_-	NA|216aa|up_9|NC_021054.1_2153038_2153686_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NC_021054.1_2153692_2155915_-	PRK15061, PRK15061, catalase/peroxidase	NA|151aa|up_7|NC_021054.1_2155952_2156405_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NC_021054.1_2156509_2157103_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NC_021054.1_2157185_2157791_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_021054.1_2157890_2158895_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_021054.1_2158994_2159747_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_021054.1_2159724_2160132_-	NA	NA|368aa|up_1|NC_021054.1_2160266_2161370_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NC_021054.1_2161369_2162566_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|64aa|down_0|NC_021054.1_2167043_2167235_+	NA	NA|989aa|down_1|NC_021054.1_2167451_2170418_-	pfam00823, PPE, PPE family	NA|155aa|down_2|NC_021054.1_2170866_2171331_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_3|NC_021054.1_2171428_2172292_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_4|NC_021054.1_2172329_2173601_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_5|NC_021054.1_2173872_2174988_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_6|NC_021054.1_2174978_2176319_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_7|NC_021054.1_2176355_2176736_-	NA	NA|621aa|down_8|NC_021054.1_2176892_2178755_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_9|NC_021054.1_2178762_2179242_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	12	2168617-2168836	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|136aa|up_3|NC_021054.1_2159724_2160132_-,NA|64aa|up_0|NC_021054.1_2167043_2167235_+,NA|127aa|down_5|NC_021054.1_2176355_2176736_-	NA|741aa|up_9|NC_021054.1_2153692_2155915_-	PRK15061, PRK15061, catalase/peroxidase	NA|151aa|up_8|NC_021054.1_2155952_2156405_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NC_021054.1_2156509_2157103_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NC_021054.1_2157185_2157791_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NC_021054.1_2157890_2158895_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NC_021054.1_2158994_2159747_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NC_021054.1_2159724_2160132_-	NA	NA|368aa|up_2|NC_021054.1_2160266_2161370_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NC_021054.1_2161369_2162566_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|64aa|up_0|NC_021054.1_2167043_2167235_+	NA	NA|155aa|down_0|NC_021054.1_2170866_2171331_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_021054.1_2171428_2172292_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_021054.1_2172329_2173601_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_021054.1_2173872_2174988_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_021054.1_2174978_2176319_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_021054.1_2176355_2176736_-	NA	NA|621aa|down_6|NC_021054.1_2176892_2178755_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_021054.1_2178762_2179242_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_021054.1_2179478_2180252_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_021054.1_2180255_2181023_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	13	3118879-3120173	2,8,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,17	17	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|135aa|up_6|NC_021054.1_3112559_3112964_+,NA|64aa|up_5|NC_021054.1_3112960_3113152_+,NA|86aa|up_3|NC_021054.1_3114738_3114996_+,NA|104aa|up_2|NC_021054.1_3115100_3115412_+,NA|203aa|up_1|NC_021054.1_3115831_3116440_+,NA	NA|348aa|up_9|NC_021054.1_3110472_3111516_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|156aa|up_8|NC_021054.1_3111514_3111982_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_7|NC_021054.1_3112121_3112487_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_6|NC_021054.1_3112559_3112964_+	NA	NA|64aa|up_5|NC_021054.1_3112960_3113152_+	NA	NA|385aa|up_4|NC_021054.1_3113350_3114505_+	pfam00665, rve, Integrase core domain	NA|86aa|up_3|NC_021054.1_3114738_3114996_+	NA	NA|104aa|up_2|NC_021054.1_3115100_3115412_+	NA	NA|203aa|up_1|NC_021054.1_3115831_3116440_+	NA	NA|470aa|up_0|NC_021054.1_3116510_3117920_+	pfam00665, rve, Integrase core domain	NA|421aa|down_0|NC_021054.1_3120262_3121524_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas1|339aa|down_1|NC_021054.1_3123656_3124673_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NC_021054.1_3124685_3125834_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_021054.1_3125929_3127057_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm3gr7|237aa|down_4|NC_021054.1_3127941_3128652_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NC_021054.1_3128661_3129036_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_6|NC_021054.1_3129032_3131462_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_7|NC_021054.1_3131458_3132403_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|295aa|down_8|NC_021054.1_3133399_3134284_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_9|NC_021054.1_3134286_3135174_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	14	3121636-3123267	3,9,6,4,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,TTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,AAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,35,36,38	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	17,22,22,17,17,17	22	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|135aa|up_7|NC_021054.1_3112559_3112964_+,NA|64aa|up_6|NC_021054.1_3112960_3113152_+,NA|86aa|up_4|NC_021054.1_3114738_3114996_+,NA|104aa|up_3|NC_021054.1_3115100_3115412_+,NA|203aa|up_2|NC_021054.1_3115831_3116440_+,NA	NA|156aa|up_9|NC_021054.1_3111514_3111982_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|NC_021054.1_3112121_3112487_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|NC_021054.1_3112559_3112964_+	NA	NA|64aa|up_6|NC_021054.1_3112960_3113152_+	NA	NA|385aa|up_5|NC_021054.1_3113350_3114505_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_021054.1_3114738_3114996_+	NA	NA|104aa|up_3|NC_021054.1_3115100_3115412_+	NA	NA|203aa|up_2|NC_021054.1_3115831_3116440_+	NA	NA|470aa|up_1|NC_021054.1_3116510_3117920_+	pfam00665, rve, Integrase core domain	NA|421aa|up_0|NC_021054.1_3120262_3121524_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas1|339aa|down_0|NC_021054.1_3123656_3124673_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_1|NC_021054.1_3124685_3125834_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_2|NC_021054.1_3125929_3127057_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm3gr7|237aa|down_3|NC_021054.1_3127941_3128652_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_4|NC_021054.1_3128661_3129036_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_5|NC_021054.1_3129032_3131462_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_6|NC_021054.1_3131458_3132403_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|295aa|down_7|NC_021054.1_3133399_3134284_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_8|NC_021054.1_3134286_3135174_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|90aa|down_9|NC_021054.1_3136022_3136292_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	15	3740316-3740856	7	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|160aa|up_9|NC_021054.1_3720397_3720877_+,NA|164aa|down_2|NC_021054.1_3752851_3753343_-,NA|79aa|down_5|NC_021054.1_3754957_3755194_-,NA|104aa|down_7|NC_021054.1_3760530_3760842_-	NA|160aa|up_9|NC_021054.1_3720397_3720877_+	NA	NA|147aa|up_8|NC_021054.1_3720895_3721336_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_021054.1_3721369_3722239_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_021054.1_3722259_3723270_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NC_021054.1_3723554_3724187_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NC_021054.1_3724253_3725483_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_021054.1_3725765_3727115_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_021054.1_3727126_3728266_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_021054.1_3728262_3728994_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NC_021054.1_3729002_3736574_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NC_021054.1_3742827_3743085_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NC_021054.1_3743340_3752814_-	pfam00823, PPE, PPE family	NA|164aa|down_2|NC_021054.1_3752851_3753343_-	NA	NA|164aa|down_3|NC_021054.1_3753394_3753886_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_4|NC_021054.1_3753922_3754663_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|NC_021054.1_3754957_3755194_-	NA	NA|1685aa|down_6|NC_021054.1_3755581_3760636_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|104aa|down_7|NC_021054.1_3760530_3760842_-	NA	NA|265aa|down_8|NC_021054.1_3766967_3767762_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_9|NC_021054.1_3767843_3768215_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	16	3939883-3940241	8	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CGGCGGNAACGNCGGGTGGCTGCTCGGC	28	0	0	NA	NA	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA,NA|73aa|down_1|NC_021054.1_3950208_3950427_-,NA|280aa|down_4|NC_021054.1_3953030_3953870_+	NA|351aa|up_9|NC_021054.1_3916553_3917606_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NC_021054.1_3917605_3918808_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NC_021054.1_3918827_3919670_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NC_021054.1_3919704_3920469_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NC_021054.1_3920694_3921648_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NC_021054.1_3921672_3921864_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NC_021054.1_3922078_3923281_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NC_021054.1_3923305_3924427_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NC_021054.1_3924497_3926006_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|279aa|up_0|NC_021054.1_3938020_3938857_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|down_0|NC_021054.1_3944695_3945352_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|73aa|down_1|NC_021054.1_3950208_3950427_-	NA	NA|549aa|down_2|NC_021054.1_3950423_3952070_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_3|NC_021054.1_3952143_3952935_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_4|NC_021054.1_3953030_3953870_+	NA	NA|399aa|down_5|NC_021054.1_3953924_3955121_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_6|NC_021054.1_3955149_3955860_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_7|NC_021054.1_3955924_3956968_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_8|NC_021054.1_3957120_3958032_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_9|NC_021054.1_3958047_3959112_+	PRK07937, PRK07937, lipid-transfer protein; Provisional
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	17	3947964-3949571	9	CRT	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	CANCGGCGGCACCGGCGGCANCGGCGGCACCGGCGGCN	38	2	8	3948556-3948590|3948556-3948590|3948556-3948590|3948556-3948590|3948556-3948590|3949446-3949471|3949446-3949471|3949446-3949471	NC_021054.1_3946674-3946708|NC_021054.1_3947016-3947050|NC_021054.1_3947605-3947639|NC_021054.1_3947956-3947990|NC_021054.1_3932409-3932443|NC_021054.1_3940863-3940888|NC_021054.1_3941199-3941224|NC_021054.1_3941545-3941570	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA,NA|73aa|down_0|NC_021054.1_3950208_3950427_-,NA|280aa|down_3|NC_021054.1_3953030_3953870_+	NA|401aa|up_9|NC_021054.1_3917605_3918808_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_8|NC_021054.1_3918827_3919670_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_7|NC_021054.1_3919704_3920469_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_6|NC_021054.1_3920694_3921648_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_5|NC_021054.1_3921672_3921864_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_4|NC_021054.1_3922078_3923281_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_3|NC_021054.1_3923305_3924427_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_2|NC_021054.1_3924497_3926006_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|279aa|up_1|NC_021054.1_3938020_3938857_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NC_021054.1_3944695_3945352_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|73aa|down_0|NC_021054.1_3950208_3950427_-	NA	NA|549aa|down_1|NC_021054.1_3950423_3952070_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_2|NC_021054.1_3952143_3952935_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_3|NC_021054.1_3953030_3953870_+	NA	NA|399aa|down_4|NC_021054.1_3953924_3955121_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_5|NC_021054.1_3955149_3955860_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_6|NC_021054.1_3955924_3956968_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_7|NC_021054.1_3957120_3958032_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_8|NC_021054.1_3958047_3959112_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_9|NC_021054.1_3959128_3960313_+	PRK08313, PRK08313, thiolase domain-containing protein
GCF_000364825.1_ASM36482v1	NC_021054	Mycobacterium tuberculosis str. Beijing/NITR203, complete genome	18	4110279-4110367	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,DinG,WYL,cas4,DEDDh,cas1,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas6,cas3	NA|65aa|up_9|NC_021054.1_4098970_4099165_+,NA|257aa|up_7|NC_021054.1_4100865_4101636_-,NA|90aa|up_2|NC_021054.1_4106857_4107127_+,NA|233aa|up_0|NC_021054.1_4109383_4110082_-,NA|126aa|down_6|NC_021054.1_4115602_4115980_+	NA|65aa|up_9|NC_021054.1_4098970_4099165_+	NA	NA|288aa|up_8|NC_021054.1_4099247_4100111_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|NC_021054.1_4100865_4101636_-	NA	NA|549aa|up_6|NC_021054.1_4101632_4103279_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|NC_021054.1_4103275_4104076_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|NC_021054.1_4104131_4105058_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|NC_021054.1_4105059_4106685_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|NC_021054.1_4106857_4107127_+	NA	NA|652aa|up_1|NC_021054.1_4107392_4109348_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_021054.1_4109383_4110082_-	NA	NA|173aa|down_0|NC_021054.1_4110427_4110946_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_021054.1_4110946_4111930_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_021054.1_4111922_4113116_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_021054.1_4113121_4113943_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_021054.1_4114074_4114758_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_021054.1_4114757_4115495_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_021054.1_4115602_4115980_+	NA	NA|225aa|down_7|NC_021054.1_4116078_4116753_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_021054.1_4116858_4117653_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_021054.1_4117659_4118115_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
