assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000364445.2_ASM36444v2	NZ_CP043538	Methylobacterium mesophilicum SR1.6/6 chromosome, complete genome	1	2277625-2277756	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	GTCCGAAGACCGACAGGATTGTCACTCGATTGCAATCG	38	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA|96aa|up_9|NZ_CP043538.1_2268132_2268420_+,NA|107aa|up_3|NZ_CP043538.1_2274282_2274603_+,NA|102aa|up_1|NZ_CP043538.1_2275398_2275704_+,NA|345aa|down_2|NZ_CP043538.1_2281693_2282728_-,NA|60aa|down_4|NZ_CP043538.1_2283368_2283548_-,NA|84aa|down_6|NZ_CP043538.1_2284924_2285176_+,NA|210aa|down_7|NZ_CP043538.1_2285595_2286225_-,NA|64aa|down_8|NZ_CP043538.1_2286712_2286904_+	NA|96aa|up_9|NZ_CP043538.1_2268132_2268420_+	NA	NA|315aa|up_8|NZ_CP043538.1_2268376_2269321_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|203aa|up_7|NZ_CP043538.1_2269693_2270302_+	pfam08447, PAS_3, PAS fold	NA|185aa|up_6|NZ_CP043538.1_2270612_2271167_+	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya	NA|149aa|up_5|NZ_CP043538.1_2271608_2272055_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|560aa|up_4|NZ_CP043538.1_2272051_2273731_+	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|107aa|up_3|NZ_CP043538.1_2274282_2274603_+	NA	NA|212aa|up_2|NZ_CP043538.1_2274653_2275289_-	pfam08447, PAS_3, PAS fold	NA|102aa|up_1|NZ_CP043538.1_2275398_2275704_+	NA	NA|490aa|up_0|NZ_CP043538.1_2275779_2277249_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|132aa|down_0|NZ_CP043538.1_2278167_2278563_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|817aa|down_1|NZ_CP043538.1_2278859_2281310_+	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|345aa|down_2|NZ_CP043538.1_2281693_2282728_-	NA	NA|97aa|down_3|NZ_CP043538.1_2283069_2283360_+	pfam07238, PilZ, PilZ domain	NA|60aa|down_4|NZ_CP043538.1_2283368_2283548_-	NA	NA|315aa|down_5|NZ_CP043538.1_2283904_2284849_+	cd14440, AlgX_N_like_3, Uncharacterized proteins similar to putative alginate O-acetyltransferase	NA|84aa|down_6|NZ_CP043538.1_2284924_2285176_+	NA	NA|210aa|down_7|NZ_CP043538.1_2285595_2286225_-	NA	NA|64aa|down_8|NZ_CP043538.1_2286712_2286904_+	NA	NA|109aa|down_9|NZ_CP043538.1_2287164_2287491_+	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain
GCF_000364445.2_ASM36444v2	NZ_CP043538	Methylobacterium mesophilicum SR1.6/6 chromosome, complete genome	2	3751686-3751921	2,1	CRISPRCasFinder,CRT	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	GCGCAACTATGAGGTTTTGGGGGA,CAACTATGAGGTTTTGGGGGAA	24,22	3	4	3751710-3751728|3751710-3751728|3751753-3751782|3751754-3751785	NZ_CP043538.1_3783037-3783019|NZ_CP043538.1_3782904-3782922|NZ_CP043538.1_3782947-3782976|NZ_CP043538.1_3782948-3782979	NA:NA	4,3	4	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA|199aa|up_9|NZ_CP043538.1_3742064_3742661_-,NA|57aa|up_7|NZ_CP043538.1_3744022_3744193_+,NA|80aa|up_6|NZ_CP043538.1_3745511_3745751_-,NA|96aa|up_4|NZ_CP043538.1_3746746_3747034_+,NA|88aa|up_2|NZ_CP043538.1_3749412_3749676_+,NA|253aa|up_1|NZ_CP043538.1_3750090_3750849_+,NA|158aa|down_0|NZ_CP043538.1_3752917_3753391_-,NA|92aa|down_7|NZ_CP043538.1_3759788_3760064_-	NA|199aa|up_9|NZ_CP043538.1_3742064_3742661_-	NA	NA|167aa|up_8|NZ_CP043538.1_3742905_3743406_+	pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein	NA|57aa|up_7|NZ_CP043538.1_3744022_3744193_+	NA	NA|80aa|up_6|NZ_CP043538.1_3745511_3745751_-	NA	NA|212aa|up_5|NZ_CP043538.1_3746105_3746741_+	cd02042, ParAB_family, partition proteins ParAB family	NA|96aa|up_4|NZ_CP043538.1_3746746_3747034_+	NA	NA|562aa|up_3|NZ_CP043538.1_3747601_3749287_+	pfam02530, Porin_2, Porin subfamily	NA|88aa|up_2|NZ_CP043538.1_3749412_3749676_+	NA	NA|253aa|up_1|NZ_CP043538.1_3750090_3750849_+	NA	NA|132aa|up_0|NZ_CP043538.1_3751125_3751521_+	pfam13565, HTH_32, Homeodomain-like domain	NA|158aa|down_0|NZ_CP043538.1_3752917_3753391_-	NA	NA|129aa|down_1|NZ_CP043538.1_3753421_3753808_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|231aa|down_2|NZ_CP043538.1_3753807_3754500_-	cd02042, ParAB_family, partition proteins ParAB family	NA|643aa|down_3|NZ_CP043538.1_3755505_3757434_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|69aa|down_4|NZ_CP043538.1_3757430_3757637_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|311aa|down_5|NZ_CP043538.1_3757756_3758689_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|307aa|down_6|NZ_CP043538.1_3758662_3759583_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|92aa|down_7|NZ_CP043538.1_3759788_3760064_-	NA	NA|440aa|down_8|NZ_CP043538.1_3761217_3762537_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|225aa|down_9|NZ_CP043538.1_3763053_3763728_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_000364445.2_ASM36444v2	NZ_CP043538	Methylobacterium mesophilicum SR1.6/6 chromosome, complete genome	3	5045740-5045844	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	GGCCGGCCCGCAGGGCGCGCCGGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA|150aa|up_8|NZ_CP043538.1_5035541_5035991_+,NA|72aa|up_7|NZ_CP043538.1_5036029_5036245_-,NA|159aa|up_3|NZ_CP043538.1_5038849_5039326_-,NA|347aa|down_8|NZ_CP043538.1_5056290_5057331_-	NA|242aa|up_9|NZ_CP043538.1_5034558_5035284_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|150aa|up_8|NZ_CP043538.1_5035541_5035991_+	NA	NA|72aa|up_7|NZ_CP043538.1_5036029_5036245_-	NA	NA|414aa|up_6|NZ_CP043538.1_5036325_5037567_+	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|180aa|up_5|NZ_CP043538.1_5037629_5038169_+	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|205aa|up_4|NZ_CP043538.1_5038169_5038784_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|159aa|up_3|NZ_CP043538.1_5038849_5039326_-	NA	NA|1097aa|up_2|NZ_CP043538.1_5039370_5042661_-	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|537aa|up_1|NZ_CP043538.1_5042657_5044268_-	cd03468, PolY_like, DNA Polymerase Y-family	NA|263aa|up_0|NZ_CP043538.1_5044194_5044983_-	COG4544, COG4544, Uncharacterized conserved protein [Function unknown]	NA|406aa|down_0|NZ_CP043538.1_5046056_5047274_-	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|259aa|down_1|NZ_CP043538.1_5047350_5048127_-	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|134aa|down_2|NZ_CP043538.1_5048141_5048543_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|211aa|down_3|NZ_CP043538.1_5048539_5049172_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|667aa|down_4|NZ_CP043538.1_5049176_5051177_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|410aa|down_5|NZ_CP043538.1_5051252_5052482_-	TIGR01433, precursor_Cytochrome_o_subunit_2_Oxidase, cytochrome o ubiquinol oxidase subunit II	NA|444aa|down_6|NZ_CP043538.1_5052596_5053928_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|730aa|down_7|NZ_CP043538.1_5054110_5056300_-	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	NA|347aa|down_8|NZ_CP043538.1_5056290_5057331_-	NA	NA|335aa|down_9|NZ_CP043538.1_5057555_5058560_-	cd14440, AlgX_N_like_3, Uncharacterized proteins similar to putative alginate O-acetyltransferase
GCF_000364445.2_ASM36444v2	NZ_CP043538	Methylobacterium mesophilicum SR1.6/6 chromosome, complete genome	4	6172740-6172819	4	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	CACCGTCACGGTGCGGGGCTCGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA,NA	NA|693aa|up_9|NZ_CP043538.1_6161522_6163601_+	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	NA|414aa|up_8|NZ_CP043538.1_6163830_6165072_+	cd06355, PBP1_FmdD-like, periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)	NA|540aa|up_7|NZ_CP043538.1_6165064_6166684_+	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|367aa|up_6|NZ_CP043538.1_6166680_6167781_+	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|237aa|up_5|NZ_CP043538.1_6167777_6168488_+	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|236aa|up_4|NZ_CP043538.1_6168484_6169192_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|306aa|up_3|NZ_CP043538.1_6169251_6170169_+	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|118aa|up_2|NZ_CP043538.1_6170325_6170679_-	pfam01527, HTH_Tnp_1, Transposase	NA|229aa|up_1|NZ_CP043538.1_6170861_6171548_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|303aa|up_0|NZ_CP043538.1_6171648_6172557_+	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|443aa|down_0|NZ_CP043538.1_6173288_6174617_+	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|436aa|down_1|NZ_CP043538.1_6174690_6175998_+	TIGR03105, gln_synth_III, glutamine synthetase, type III	NA|259aa|down_2|NZ_CP043538.1_6176025_6176802_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|282aa|down_3|NZ_CP043538.1_6176807_6177653_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|250aa|down_4|NZ_CP043538.1_6177649_6178399_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|280aa|down_5|NZ_CP043538.1_6178538_6179378_-	cd13693, PBP2_polar_AA, Substrate binding domain of polar amino-acid uptake  ABC transporter; the type 2 periplasmic binding protein fold	NA|390aa|down_6|NZ_CP043538.1_6179461_6180631_-	PRK11259, solA, N-methyl-L-tryptophan oxidase	NA|332aa|down_7|NZ_CP043538.1_6180776_6181772_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|399aa|down_8|NZ_CP043538.1_6182141_6183338_-	PRK08310, PRK08310, amidase; Provisional	NA|411aa|down_9|NZ_CP043538.1_6183334_6184567_-	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases
GCF_000364445.2_ASM36444v2	NZ_CP043538	Methylobacterium mesophilicum SR1.6/6 chromosome, complete genome	5	6326839-6326939	5	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	ATCACGCCGGTGCCGCCGATGCC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA,NA|282aa|down_0|NZ_CP043538.1_6327052_6327898_-,NA|111aa|down_1|NZ_CP043538.1_6328049_6328382_+	NA|316aa|up_9|NZ_CP043538.1_6314680_6315628_-	cd08419, PBP2_CbbR_RubisCO_like, The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold	NA|352aa|up_8|NZ_CP043538.1_6315822_6316878_+	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|287aa|up_7|NZ_CP043538.1_6316901_6317762_+	PRK15453, PRK15453, phosphoribulokinase; Provisional	NA|229aa|up_6|NZ_CP043538.1_6317983_6318670_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|250aa|up_5|NZ_CP043538.1_6318663_6319413_+	cd07528, HAD_CbbY-like, subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides xylulose-1,5-bisphosphate phosphatase CbbY	NA|423aa|up_4|NZ_CP043538.1_6319624_6320893_+	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|357aa|up_3|NZ_CP043538.1_6320882_6321953_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|249aa|up_2|NZ_CP043538.1_6322147_6322894_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|328aa|up_1|NZ_CP043538.1_6323164_6324148_-	cd14440, AlgX_N_like_3, Uncharacterized proteins similar to putative alginate O-acetyltransferase	NA|370aa|up_0|NZ_CP043538.1_6324277_6325387_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|282aa|down_0|NZ_CP043538.1_6327052_6327898_-	NA	NA|111aa|down_1|NZ_CP043538.1_6328049_6328382_+	NA	NA|247aa|down_2|NZ_CP043538.1_6328549_6329290_+	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|124aa|down_3|NZ_CP043538.1_6329468_6329840_+	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of  Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent	NA|204aa|down_4|NZ_CP043538.1_6329857_6330469_-	PRK14141, PRK14141, heat shock protein GrpE; Provisional	NA|936aa|down_5|NZ_CP043538.1_6330573_6333381_-	PRK05092, PRK05092, PII uridylyl-transferase; Provisional	NA|476aa|down_6|NZ_CP043538.1_6333448_6334876_-	COG2358, Imp, TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|176aa|down_7|NZ_CP043538.1_6335100_6335628_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|404aa|down_8|NZ_CP043538.1_6335704_6336916_+	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein	NA|491aa|down_9|NZ_CP043538.1_6337089_6338562_+	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain
