assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000349975.1_ASM34997v1	NC_020555	Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 chromosome 1, complete sequence	1	148945-149068	1	PILER-CR	no		DEDDh,cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	Orphan	ATTCTTATGGAGAGTTTG	18	1	1	149013-149050	NC_020555.1_544867-544904	NA	2	2	Orphan	DEDDh,cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	NA|105aa|up_8|NC_020555.1_141589_141904_-,NA|83aa|up_6|NC_020555.1_142307_142556_-,NA|56aa|down_0|NC_020555.1_154779_154947_+,NA|473aa|down_1|NC_020555.1_156028_157447_+,NA|206aa|down_5|NC_020555.1_160766_161384_+	NA|180aa|up_9|NC_020555.1_140915_141455_-	pfam00520, Ion_trans, Ion transport protein	NA|105aa|up_8|NC_020555.1_141589_141904_-	NA	NA|116aa|up_7|NC_020555.1_141947_142295_-	pfam05154, TM2, TM2 domain	NA|83aa|up_6|NC_020555.1_142307_142556_-	NA	NA|119aa|up_5|NC_020555.1_143276_143633_-	pfam05154, TM2, TM2 domain	NA|265aa|up_4|NC_020555.1_143761_144556_+	cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water	NA|84aa|up_3|NC_020555.1_144615_144867_+	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	NA|491aa|up_2|NC_020555.1_144866_146339_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|356aa|up_1|NC_020555.1_146340_147408_+	TIGR02193, LIPOPOLYSACCHARIDE_HEPTOSYLTRANSFERASE-1, lipopolysaccharide heptosyltransferase I	NA|305aa|up_0|NC_020555.1_147404_148319_+	PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase; Reviewed	NA|56aa|down_0|NC_020555.1_154779_154947_+	NA	NA|473aa|down_1|NC_020555.1_156028_157447_+	NA	NA|478aa|down_2|NC_020555.1_157421_158855_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|364aa|down_3|NC_020555.1_158858_159950_+	PRK10073, PRK10073, putative glycosyl transferase; Provisional	NA|237aa|down_4|NC_020555.1_160038_160749_+	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_5|NC_020555.1_160766_161384_+	NA	NA|329aa|down_6|NC_020555.1_161513_162500_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|148aa|down_7|NC_020555.1_162500_162944_+	pfam10788, DUF2603, Protein of unknown function (DUF2603)	NA|458aa|down_8|NC_020555.1_162976_164350_+	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|438aa|down_9|NC_020555.1_164358_165672_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]
GCF_000349975.1_ASM34997v1	NC_020555	Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 chromosome 1, complete sequence	2	1362505-1364592	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	DEDDh,cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	Type II-A, Type II-B, or Type II-C?,Type II-B,Type II-C	GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT,GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT,GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	36,36,36	5	5	1363997-1364026|1364129-1364158|1364195-1364225|1364262-1364292|1364527-1364556	NC_020555.1_1159926-1159897|NC_020555.1_1376799-1376828|NC_020555.1_295021-294991|NC_020555.1_295021-294991|NC_020555.1_243147-243118	NA:NA:NA	31,31,27	31	TypeII-A,TypeII-B,orTypeII-C?,TypeII-B,TypeII-C	DEDDh,cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	NA|159aa|up_9|NC_020555.1_1356600_1357077_-,NA|71aa|up_8|NC_020555.1_1357126_1357339_-,NA|46aa|up_7|NC_020555.1_1357548_1357686_-,NA|133aa|up_6|NC_020555.1_1357695_1358094_-,NA|179aa|up_5|NC_020555.1_1358118_1358655_-,NA|303aa|up_4|NC_020555.1_1358664_1359573_-,NA|459aa|up_3|NC_020555.1_1359584_1360961_-,NA|231aa|up_2|NC_020555.1_1360960_1361653_-,NA|106aa|up_1|NC_020555.1_1361847_1362165_-,NA|57aa|up_0|NC_020555.1_1362254_1362425_-,NA|112aa|down_3|NC_020555.1_1369385_1369721_+,NA|113aa|down_6|NC_020555.1_1371933_1372272_-,NA|271aa|down_7|NC_020555.1_1372276_1373089_-,NA|46aa|down_8|NC_020555.1_1373101_1373239_-	NA|159aa|up_9|NC_020555.1_1356600_1357077_-	NA	NA|71aa|up_8|NC_020555.1_1357126_1357339_-	NA	NA|46aa|up_7|NC_020555.1_1357548_1357686_-	NA	NA|133aa|up_6|NC_020555.1_1357695_1358094_-	NA	NA|179aa|up_5|NC_020555.1_1358118_1358655_-	NA	NA|303aa|up_4|NC_020555.1_1358664_1359573_-	NA	NA|459aa|up_3|NC_020555.1_1359584_1360961_-	NA	NA|231aa|up_2|NC_020555.1_1360960_1361653_-	NA	NA|106aa|up_1|NC_020555.1_1361847_1362165_-	NA	NA|57aa|up_0|NC_020555.1_1362254_1362425_-	NA	cas2|145aa|down_0|NC_020555.1_1364749_1365184_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|299aa|down_1|NC_020555.1_1365194_1366091_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1024aa|down_2|NC_020555.1_1366092_1369164_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|112aa|down_3|NC_020555.1_1369385_1369721_+	NA	NA|130aa|down_4|NC_020555.1_1369695_1370085_+	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|614aa|down_5|NC_020555.1_1370090_1371932_-	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|113aa|down_6|NC_020555.1_1371933_1372272_-	NA	NA|271aa|down_7|NC_020555.1_1372276_1373089_-	NA	NA|46aa|down_8|NC_020555.1_1373101_1373239_-	NA	NA|994aa|down_9|NC_020555.1_1373310_1376292_-	PRK15483, PRK15483, type III restriction-modification system endonuclease
GCF_000349975.1_ASM34997v1	NC_020555	Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 chromosome 1, complete sequence	3	1889859-1890162	3,2	PILER-CR,CRISPRCasFinder	no	csx20,csx23,cas10,csm3gr7,csx19	DEDDh,cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	Type III-C,Type III-B,Type III-A,Type III-D	TTTTCAGGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACTG,GGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC	45,37	4	4	1889970-1889990|1889965-1889993|1890031-1890059|1890097-1890125	NC_020555.1_98865-98885|NC_020555.1_98863-98891|NC_020555.1_968296-968268|NC_020555.1_968296-968268	NA:NA	2,4	4	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	DEDDh,cas3,cas2,cas1,cas9,cas4,csx20,csx23,cas10,csm3gr7,csx19	NA|357aa|up_9|NC_020555.1_1879576_1880647_-,csx23|108aa|up_7|NC_020555.1_1881292_1881616_+,cas10|93aa|up_6|NC_020555.1_1882430_1882709_+,NA|46aa|down_5|NC_020555.1_1897143_1897281_+,NA|123aa|down_8|NC_020555.1_1900546_1900915_-	NA|357aa|up_9|NC_020555.1_1879576_1880647_-	NA	NA|149aa|up_8|NC_020555.1_1880712_1881159_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx23|108aa|up_7|NC_020555.1_1881292_1881616_+	NA	cas10|93aa|up_6|NC_020555.1_1882430_1882709_+	NA	cas10|368aa|up_5|NC_020555.1_1882721_1883825_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	csm3gr7|265aa|up_4|NC_020555.1_1883840_1884635_+	pfam03787, RAMPs, RAMP superfamily	csx19|145aa|up_3|NC_020555.1_1884615_1885050_+	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family	csm3gr7|594aa|up_2|NC_020555.1_1885042_1886824_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|343aa|up_1|NC_020555.1_1887087_1888116_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|201aa|up_0|NC_020555.1_1888143_1888746_+	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|470aa|down_0|NC_020555.1_1890405_1891815_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|382aa|down_1|NC_020555.1_1891823_1892969_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|184aa|down_2|NC_020555.1_1892965_1893517_-	pfam04368, DUF507, Protein of unknown function (DUF507)	NA|671aa|down_3|NC_020555.1_1893580_1895593_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|461aa|down_4|NC_020555.1_1895626_1897009_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|46aa|down_5|NC_020555.1_1897143_1897281_+	NA	NA|152aa|down_6|NC_020555.1_1897285_1897741_+	pfam01475, FUR, Ferric uptake regulator family	NA|618aa|down_7|NC_020555.1_1898683_1900537_+	COG3843, VirD2, Type IV secretory pathway, VirD2 components (relaxase) [Intracellular trafficking and secretion]	NA|123aa|down_8|NC_020555.1_1900546_1900915_-	NA	NA|283aa|down_9|NC_020555.1_1900911_1901760_-	COG3177, COG3177, Fic family protein [Function unknown]
