assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000349785.2_ASM34978v2	NC_020834	Mannheimia haemolytica USDA-ARS-USMARC-185, complete sequence	1	1020065-1022288	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Type I-C, Type I-U?,Type I-U	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC,CAGCCACCTACGCGTGGCTGCGAATTGAAAC,CAGCCACCTACGCGTGGCTGCGAATTGAAAC	32,31,31	0	0	NA	NA	NA:NA:NA	32,32,33	33	TypeI-C,TypeI-U?,TypeI-U	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA|154aa|up_7|NC_020834.2_1010707_1011169_+,NA|307aa|up_2|NC_020834.2_1017183_1018104_+,NA	NA|139aa|up_9|NC_020834.2_1008949_1009366_-	pfam01797, Y1_Tnp, Transposase IS200 like	c2c9_V-U4|379aa|up_8|NC_020834.2_1009412_1010549_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|154aa|up_7|NC_020834.2_1010707_1011169_+	NA	cas5|226aa|up_6|NC_020834.2_1013151_1013829_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|595aa|up_5|NC_020834.2_1013825_1015610_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|288aa|up_4|NC_020834.2_1015619_1016483_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|225aa|up_3|NC_020834.2_1016482_1017157_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|307aa|up_2|NC_020834.2_1017183_1018104_+	NA	cas1|338aa|up_1|NC_020834.2_1018500_1019514_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NC_020834.2_1019580_1019874_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|492aa|down_0|NC_020834.2_1022472_1023948_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NC_020834.2_1024101_1025604_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|358aa|down_2|NC_020834.2_1025681_1026755_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|228aa|down_3|NC_020834.2_1027022_1027706_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|280aa|down_4|NC_020834.2_1027742_1028582_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|134aa|down_5|NC_020834.2_1028651_1029053_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|511aa|down_6|NC_020834.2_1029489_1031022_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|251aa|down_7|NC_020834.2_1031247_1032000_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|397aa|down_8|NC_020834.2_1032011_1033202_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|269aa|down_9|NC_020834.2_1033203_1034010_+	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit
GCF_000349785.2_ASM34978v2	NC_020834	Mannheimia haemolytica USDA-ARS-USMARC-185, complete sequence	2	1415574-1415648	2	CRISPRCasFinder	no	DinG,c2c9_V-U4	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Type IV-A, Type V-U4?	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	TypeIV-A,TypeV-U4?	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA|74aa|up_7|NC_020834.2_1405599_1405821_-,NA|52aa|down_5|NC_020834.2_1425958_1426114_-,NA|138aa|down_6|NC_020834.2_1426127_1426541_-,NA|281aa|down_7|NC_020834.2_1426656_1427499_-,NA|81aa|down_8|NC_020834.2_1427762_1428005_-	NA|122aa|up_9|NC_020834.2_1403052_1403418_-	PRK01821, PRK01821, hypothetical protein; Provisional	DinG|642aa|up_8|NC_020834.2_1403491_1405417_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|74aa|up_7|NC_020834.2_1405599_1405821_-	NA	NA|266aa|up_6|NC_020834.2_1405907_1406705_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|311aa|up_5|NC_020834.2_1406706_1407639_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|578aa|up_4|NC_020834.2_1407880_1409614_+	PRK11660, PRK11660, putative transporter; Provisional	NA|943aa|up_3|NC_020834.2_1409705_1412534_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|172aa|up_2|NC_020834.2_1412688_1413204_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|68aa|up_1|NC_020834.2_1414012_1414216_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NC_020834.2_1414215_1415457_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NC_020834.2_1415860_1416901_-	pfam00665, rve, Integrase core domain	NA|564aa|down_1|NC_020834.2_1417077_1418769_-	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|239aa|down_2|NC_020834.2_1420426_1421143_+	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|662aa|down_3|NC_020834.2_1422105_1424091_-	pfam07514, TraI_2, Putative helicase	NA|312aa|down_4|NC_020834.2_1424895_1425831_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|52aa|down_5|NC_020834.2_1425958_1426114_-	NA	NA|138aa|down_6|NC_020834.2_1426127_1426541_-	NA	NA|281aa|down_7|NC_020834.2_1426656_1427499_-	NA	NA|81aa|down_8|NC_020834.2_1427762_1428005_-	NA	NA|139aa|down_9|NC_020834.2_1428235_1428652_-	pfam01797, Y1_Tnp, Transposase IS200 like
GCF_000349785.2_ASM34978v2	NC_020834	Mannheimia haemolytica USDA-ARS-USMARC-185, complete sequence	3	1653068-1653142	3	CRISPRCasFinder	no		cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Orphan	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA,NA|198aa|down_2|NC_020834.2_1655165_1655759_-,NA|288aa|down_3|NC_020834.2_1655882_1656746_-	NA|347aa|up_9|NC_020834.2_1641809_1642850_+	pfam00665, rve, Integrase core domain	NA|98aa|up_8|NC_020834.2_1642916_1643210_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|85aa|up_7|NC_020834.2_1643211_1643466_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|259aa|up_6|NC_020834.2_1643475_1644252_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NC_020834.2_1644335_1644974_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NC_020834.2_1645037_1645307_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NC_020834.2_1645393_1646488_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NC_020834.2_1646542_1650739_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NC_020834.2_1650887_1651661_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NC_020834.2_1651814_1652855_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NC_020834.2_1653258_1654500_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NC_020834.2_1654499_1654703_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|198aa|down_2|NC_020834.2_1655165_1655759_-	NA	NA|288aa|down_3|NC_020834.2_1655882_1656746_-	NA	NA|250aa|down_4|NC_020834.2_1656917_1657667_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|162aa|down_5|NC_020834.2_1657668_1658154_-	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|182aa|down_6|NC_020834.2_1658217_1658763_-	PRK04946, PRK04946, endonuclease SmrB	NA|315aa|down_7|NC_020834.2_1658855_1659800_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|298aa|down_8|NC_020834.2_1659883_1660777_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|154aa|down_9|NC_020834.2_1660789_1661251_-	pfam14534, DUF4440, Domain of unknown function (DUF4440)
