assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000349765.2_ASM34976v2	NC_020833	Mannheimia haemolytica USDA-ARS-USMARC-183, complete sequence	1	1086475-1087709	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Type I-C,Type I-U, Type I-U?	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC,CAGCCACCTACGCGTGGCTGCGAATTGAAAC,CAGCCACCTACGCGTGGCTGNGAATTGAAAC	32,31,31	8	8	1086507-1086542|1086575-1086608|1086641-1086675|1086774-1086809|1086842-1086876|1086909-1086942|1086641-1086676|1086774-1086810	NC_020833.2_62708-62743|NC_020833.2_68618-68651|NC_020833.2_1415833-1415799|NC_020833.2_1166644-1166679|NC_020833.2_1165984-1166018|NC_020833.2_1166295-1166328|NC_020833.2_1415833-1415798|NC_020833.2_1166644-1166680	NA:NA:NA	17,17,18	18	TypeI-C,TypeI-U,TypeI-U?	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA|154aa|up_7|NC_020833.2_1077095_1077557_+,NA|307aa|up_2|NC_020833.2_1083593_1084514_+,NA	NA|139aa|up_9|NC_020833.2_1075337_1075754_-	pfam01797, Y1_Tnp, Transposase IS200 like	c2c9_V-U4|379aa|up_8|NC_020833.2_1075800_1076937_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|154aa|up_7|NC_020833.2_1077095_1077557_+	NA	cas5|226aa|up_6|NC_020833.2_1079539_1080217_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|594aa|up_5|NC_020833.2_1080238_1082020_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|288aa|up_4|NC_020833.2_1082029_1082893_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|225aa|up_3|NC_020833.2_1082892_1083567_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|307aa|up_2|NC_020833.2_1083593_1084514_+	NA	cas1|338aa|up_1|NC_020833.2_1084910_1085924_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NC_020833.2_1085990_1086284_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|492aa|down_0|NC_020833.2_1087893_1089369_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NC_020833.2_1089522_1091025_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|358aa|down_2|NC_020833.2_1091102_1092176_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|228aa|down_3|NC_020833.2_1092443_1093127_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|280aa|down_4|NC_020833.2_1093163_1094003_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|134aa|down_5|NC_020833.2_1094072_1094474_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|511aa|down_6|NC_020833.2_1094910_1096443_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|251aa|down_7|NC_020833.2_1096668_1097421_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|397aa|down_8|NC_020833.2_1097432_1098623_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|269aa|down_9|NC_020833.2_1098624_1099431_+	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit
GCF_000349765.2_ASM34976v2	NC_020833	Mannheimia haemolytica USDA-ARS-USMARC-183, complete sequence	2	1163483-1163597	2	CRISPRCasFinder	no		cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Orphan	ACAGTGGCGAAATTATTACGATTTATCC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA|93aa|up_6|NC_020833.2_1157257_1157536_-,NA|59aa|up_4|NC_020833.2_1160551_1160728_+,NA|93aa|down_2|NC_020833.2_1166118_1166397_-,NA|116aa|down_7|NC_020833.2_1168865_1169213_+	NA|74aa|up_9|NC_020833.2_1156052_1156274_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|162aa|up_8|NC_020833.2_1156270_1156756_+	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|153aa|up_7|NC_020833.2_1156748_1157207_+	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|93aa|up_6|NC_020833.2_1157257_1157536_-	NA	NA|971aa|up_5|NC_020833.2_1157574_1160487_+	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|59aa|up_4|NC_020833.2_1160551_1160728_+	NA	NA|96aa|up_3|NC_020833.2_1160720_1161008_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|202aa|up_2|NC_020833.2_1161136_1161742_+	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|112aa|up_1|NC_020833.2_1161741_1162077_+	PHA02516, W, baseplate wedge subunit; Provisional	NA|306aa|up_0|NC_020833.2_1162073_1162991_+	PHA02568, J, baseplate assembly protein; Provisional	NA|760aa|down_0|NC_020833.2_1163612_1165892_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|81aa|down_1|NC_020833.2_1165892_1166135_+	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|93aa|down_2|NC_020833.2_1166118_1166397_-	NA	NA|394aa|down_3|NC_020833.2_1166572_1167754_+	PHA02560, FI, major tail sheath protein; Provisional	NA|169aa|down_4|NC_020833.2_1167762_1168269_+	PHA02600, FII, major tail tube protein; Provisional	NA|105aa|down_5|NC_020833.2_1168347_1168662_+	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|39aa|down_6|NC_020833.2_1168685_1168802_+	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|116aa|down_7|NC_020833.2_1168865_1169213_+	NA	NA|146aa|down_8|NC_020833.2_1169214_1169652_+	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|413aa|down_9|NC_020833.2_1169651_1170890_+	PHA02561, D, tail protein; Provisional
GCF_000349765.2_ASM34976v2	NC_020833	Mannheimia haemolytica USDA-ARS-USMARC-183, complete sequence	3	1563147-1563221	3	CRISPRCasFinder	no	DinG	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Type IV-A	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA|74aa|up_7|NC_020833.2_1553172_1553394_-,NA|52aa|down_6|NC_020833.2_1573512_1573668_-,NA|138aa|down_7|NC_020833.2_1573681_1574095_-,NA|281aa|down_8|NC_020833.2_1574209_1575052_-,NA|81aa|down_9|NC_020833.2_1575315_1575558_-	NA|122aa|up_9|NC_020833.2_1550625_1550991_-	PRK01821, PRK01821, hypothetical protein; Provisional	DinG|642aa|up_8|NC_020833.2_1551064_1552990_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|74aa|up_7|NC_020833.2_1553172_1553394_-	NA	NA|266aa|up_6|NC_020833.2_1553480_1554278_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|311aa|up_5|NC_020833.2_1554279_1555212_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|578aa|up_4|NC_020833.2_1555453_1557187_+	PRK11660, PRK11660, putative transporter; Provisional	NA|943aa|up_3|NC_020833.2_1557278_1560107_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|172aa|up_2|NC_020833.2_1560261_1560777_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|68aa|up_1|NC_020833.2_1561585_1561789_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NC_020833.2_1561788_1563030_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NC_020833.2_1563433_1564474_-	pfam00665, rve, Integrase core domain	NA|564aa|down_1|NC_020833.2_1564650_1566342_-	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|366aa|down_2|NC_020833.2_1566553_1567651_-	pfam00665, rve, Integrase core domain	NA|239aa|down_3|NC_020833.2_1567980_1568697_+	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|662aa|down_4|NC_020833.2_1569659_1571645_-	pfam07514, TraI_2, Putative helicase	NA|328aa|down_5|NC_020833.2_1572449_1573433_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|52aa|down_6|NC_020833.2_1573512_1573668_-	NA	NA|138aa|down_7|NC_020833.2_1573681_1574095_-	NA	NA|281aa|down_8|NC_020833.2_1574209_1575052_-	NA	NA|81aa|down_9|NC_020833.2_1575315_1575558_-	NA
GCF_000349765.2_ASM34976v2	NC_020833	Mannheimia haemolytica USDA-ARS-USMARC-183, complete sequence	4	1787373-1787451	4	CRISPRCasFinder	no		cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Orphan	CCTTAAATATCCTAGATTAGTTTCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA|144aa|up_9|NC_020833.2_1782988_1783420_+,NA|53aa|up_7|NC_020833.2_1784655_1784814_-,NA|59aa|up_6|NC_020833.2_1784817_1784994_-,NA|86aa|up_5|NC_020833.2_1785007_1785265_+,NA|52aa|up_4|NC_020833.2_1785402_1785558_+,NA|53aa|up_3|NC_020833.2_1785611_1785770_+,NA|77aa|up_1|NC_020833.2_1786200_1786431_+,NA	NA|144aa|up_9|NC_020833.2_1782988_1783420_+	NA	NA|363aa|up_8|NC_020833.2_1783484_1784573_+	pfam13614, AAA_31, AAA domain	NA|53aa|up_7|NC_020833.2_1784655_1784814_-	NA	NA|59aa|up_6|NC_020833.2_1784817_1784994_-	NA	NA|86aa|up_5|NC_020833.2_1785007_1785265_+	NA	NA|52aa|up_4|NC_020833.2_1785402_1785558_+	NA	NA|53aa|up_3|NC_020833.2_1785611_1785770_+	NA	NA|106aa|up_2|NC_020833.2_1785762_1786080_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|77aa|up_1|NC_020833.2_1786200_1786431_+	NA	NA|185aa|up_0|NC_020833.2_1786698_1787253_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|197aa|down_0|NC_020833.2_1787570_1788161_-	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid	NA|347aa|down_1|NC_020833.2_1788300_1789341_+	pfam00665, rve, Integrase core domain	NA|98aa|down_2|NC_020833.2_1789407_1789701_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|85aa|down_3|NC_020833.2_1789702_1789957_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|259aa|down_4|NC_020833.2_1789966_1790743_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|down_5|NC_020833.2_1790826_1791465_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|down_6|NC_020833.2_1791528_1791798_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|down_7|NC_020833.2_1791884_1792979_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|down_8|NC_020833.2_1793033_1797230_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|down_9|NC_020833.2_1797378_1798152_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
GCF_000349765.2_ASM34976v2	NC_020833	Mannheimia haemolytica USDA-ARS-USMARC-183, complete sequence	5	1799559-1799633	5	CRISPRCasFinder	no		cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	Orphan	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,PD-DExK	NA,NA|198aa|down_2|NC_020833.2_1801656_1802250_-,NA|288aa|down_3|NC_020833.2_1802373_1803237_-	NA|347aa|up_9|NC_020833.2_1788300_1789341_+	pfam00665, rve, Integrase core domain	NA|98aa|up_8|NC_020833.2_1789407_1789701_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|85aa|up_7|NC_020833.2_1789702_1789957_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|259aa|up_6|NC_020833.2_1789966_1790743_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NC_020833.2_1790826_1791465_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NC_020833.2_1791528_1791798_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NC_020833.2_1791884_1792979_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NC_020833.2_1793033_1797230_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NC_020833.2_1797378_1798152_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NC_020833.2_1798305_1799346_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NC_020833.2_1799749_1800991_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NC_020833.2_1800990_1801194_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|198aa|down_2|NC_020833.2_1801656_1802250_-	NA	NA|288aa|down_3|NC_020833.2_1802373_1803237_-	NA	NA|250aa|down_4|NC_020833.2_1803408_1804158_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|162aa|down_5|NC_020833.2_1804159_1804645_-	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|182aa|down_6|NC_020833.2_1804708_1805254_-	PRK04946, PRK04946, endonuclease SmrB	NA|315aa|down_7|NC_020833.2_1805346_1806291_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|298aa|down_8|NC_020833.2_1806374_1807268_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|154aa|down_9|NC_020833.2_1807280_1807742_-	pfam14534, DUF4440, Domain of unknown function (DUF4440)
