assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	1	12159-12340	1,1	CRISPRCasFinder,PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GGTATTTGCTGGGTTGTGTATGTCTGGGCATGCGTA,CCGGTATTTGCTGGGTTGTGTATGTCTGGGCATGCGTA	36,38	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|627aa|up_6|NC_020546.1_309_2190_+	PRK00149, dnaA, chromosomal replication initiator protein DnaA	NA|375aa|up_5|NC_020546.1_2773_3898_+	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated	NA|498aa|up_4|NC_020546.1_4148_5642_+	PRK00064, recF, recombination protein F; Reviewed	NA|160aa|up_3|NC_020546.1_5638_6118_+	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|724aa|up_2|NC_020546.1_6293_8465_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|896aa|up_1|NC_020546.1_8588_11276_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|170aa|up_0|NC_020546.1_11417_11927_+	pfam12089, DUF3566, Transmembrane domain of unknown function (DUF3566)	NA|365aa|down_0|NC_020546.1_12825_13920_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|407aa|down_1|NC_020546.1_14012_15233_+	pfam04892, VanZ, VanZ like family	NA|449aa|down_2|NC_020546.1_15349_16696_-	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|156aa|down_3|NC_020546.1_17067_17535_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|229aa|down_4|NC_020546.1_18127_18814_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|236aa|down_5|NC_020546.1_18924_19632_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|573aa|down_6|NC_020546.1_19809_21528_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|460aa|down_7|NC_020546.1_22062_23442_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|255aa|down_8|NC_020546.1_23542_24307_-	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|188aa|down_9|NC_020546.1_24596_25160_+	TIGR03137, AhpC, peroxiredoxin
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	2	62310-62476	2	PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	CGTATGCCGGGGCATACGCAAG	22	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|75aa|up_1|NC_020546.1_58710_58935_+,NA|49aa|down_8|NC_020546.1_74856_75003_+	NA|344aa|up_9|NC_020546.1_47384_48416_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|687aa|up_8|NC_020546.1_48412_50473_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|217aa|up_7|NC_020546.1_52198_52849_-	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|424aa|up_6|NC_020546.1_52884_54156_-	cd05830, Sortase_E, Sortase domain found in the class E family of sortases	NA|321aa|up_5|NC_020546.1_54201_55164_-	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|137aa|up_4|NC_020546.1_55243_55654_+	PRK02251, PRK02251, cell division protein CrgA	NA|417aa|up_3|NC_020546.1_55843_57094_-	pfam18096, Thump_like, THUMP domain-like	NA|244aa|up_2|NC_020546.1_57818_58550_-	pfam01694, Rhomboid, Rhomboid family	NA|75aa|up_1|NC_020546.1_58710_58935_+	NA	NA|822aa|up_0|NC_020546.1_59663_62129_+	TIGR02093, Glycogen_phosphorylase, glycogen/starch/alpha-glucan phosphorylases	NA|363aa|down_0|NC_020546.1_63383_64472_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|126aa|down_1|NC_020546.1_64608_64986_+	pfam11273, DUF3073, Protein of unknown function (DUF3073)	NA|434aa|down_2|NC_020546.1_65582_66884_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|342aa|down_3|NC_020546.1_67877_68903_+	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|598aa|down_4|NC_020546.1_69192_70986_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|366aa|down_5|NC_020546.1_71262_72360_-	pfam11814, DUF3335, Peptidase_C39 like family	NA|531aa|down_6|NC_020546.1_72356_73949_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|238aa|down_7|NC_020546.1_73954_74668_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|49aa|down_8|NC_020546.1_74856_75003_+	NA	NA|66aa|down_9|NC_020546.1_75167_75365_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	3	103446-103693	2	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	TGTGAGTGGATCCTCGCACGATGACGGTC	29	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|53aa|down_1|NC_020546.1_105178_105337_-	NA|204aa|up_9|NC_020546.1_88568_89180_-	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|293aa|up_8|NC_020546.1_89332_90211_-	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|642aa|up_7|NC_020546.1_91412_93338_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|782aa|up_6|NC_020546.1_94102_96448_+	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|152aa|up_5|NC_020546.1_97109_97565_-	pfam13274, DUF4065, Protein of unknown function (DUF4065)	NA|337aa|up_4|NC_020546.1_97726_98737_+	cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	NA|487aa|up_3|NC_020546.1_99029_100490_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|325aa|up_2|NC_020546.1_100740_101715_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|282aa|up_1|NC_020546.1_101964_102810_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|137aa|up_0|NC_020546.1_102921_103332_+	PRK09218, PRK09218, peptide deformylase; Validated	NA|394aa|down_0|NC_020546.1_103723_104905_-	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|53aa|down_1|NC_020546.1_105178_105337_-	NA	NA|87aa|down_2|NC_020546.1_105393_105654_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|87aa|down_3|NC_020546.1_105657_105918_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|56aa|down_4|NC_020546.1_106370_106538_-	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|41aa|down_5|NC_020546.1_106537_106660_-	pfam00444, Ribosomal_L36, Ribosomal protein L36	NA|125aa|down_6|NC_020546.1_106656_107031_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|102aa|down_7|NC_020546.1_107129_107435_-	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|56aa|down_8|NC_020546.1_107436_107604_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|80aa|down_9|NC_020546.1_107690_107930_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	4	146036-146151	3	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	CGTCATCTCACGCGACGGTTGCGTTCGCGC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|115aa|up_6|NC_020546.1_138792_139137_+,NA|116aa|up_3|NC_020546.1_140848_141196_+,NA|320aa|down_3|NC_020546.1_153235_154195_-,NA|162aa|down_6|NC_020546.1_156156_156642_+	NA|534aa|up_9|NC_020546.1_131561_133163_+	cd06174, MFS, Major Facilitator Superfamily	NA|452aa|up_8|NC_020546.1_135544_136900_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|up_7|NC_020546.1_137393_138446_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|115aa|up_6|NC_020546.1_138792_139137_+	NA	NA|129aa|up_5|NC_020546.1_139174_139561_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|344aa|up_4|NC_020546.1_139664_140696_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|116aa|up_3|NC_020546.1_140848_141196_+	NA	NA|309aa|up_2|NC_020546.1_141316_142243_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|595aa|up_1|NC_020546.1_142239_144024_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|522aa|up_0|NC_020546.1_144377_145943_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|348aa|down_0|NC_020546.1_149339_150383_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|602aa|down_1|NC_020546.1_150689_152495_+	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|134aa|down_2|NC_020546.1_152741_153143_-	pfam05534, HicB, HicB family	NA|320aa|down_3|NC_020546.1_153235_154195_-	NA	NA|236aa|down_4|NC_020546.1_154184_154892_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|97aa|down_5|NC_020546.1_155018_155309_+	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|162aa|down_6|NC_020546.1_156156_156642_+	NA	NA|340aa|down_7|NC_020546.1_156699_157719_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|548aa|down_8|NC_020546.1_158811_160455_+	pfam12892, FctA, Spy0128-like isopeptide containing domain	NA|521aa|down_9|NC_020546.1_160623_162186_+	pfam17802, SpaA, Prealbumin-like fold domain
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	5	148603-148844	4	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	TGTGTGAGTGGATCCTCACACAA	23	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|115aa|up_7|NC_020546.1_138792_139137_+,NA|116aa|up_4|NC_020546.1_140848_141196_+,NA|320aa|down_3|NC_020546.1_153235_154195_-,NA|162aa|down_6|NC_020546.1_156156_156642_+	NA|452aa|up_9|NC_020546.1_135544_136900_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|up_8|NC_020546.1_137393_138446_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|115aa|up_7|NC_020546.1_138792_139137_+	NA	NA|129aa|up_6|NC_020546.1_139174_139561_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|344aa|up_5|NC_020546.1_139664_140696_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|116aa|up_4|NC_020546.1_140848_141196_+	NA	NA|309aa|up_3|NC_020546.1_141316_142243_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|595aa|up_2|NC_020546.1_142239_144024_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|522aa|up_1|NC_020546.1_144377_145943_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|179aa|up_0|NC_020546.1_146123_146660_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|348aa|down_0|NC_020546.1_149339_150383_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|602aa|down_1|NC_020546.1_150689_152495_+	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|134aa|down_2|NC_020546.1_152741_153143_-	pfam05534, HicB, HicB family	NA|320aa|down_3|NC_020546.1_153235_154195_-	NA	NA|236aa|down_4|NC_020546.1_154184_154892_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|97aa|down_5|NC_020546.1_155018_155309_+	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|162aa|down_6|NC_020546.1_156156_156642_+	NA	NA|340aa|down_7|NC_020546.1_156699_157719_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|548aa|down_8|NC_020546.1_158811_160455_+	pfam12892, FctA, Spy0128-like isopeptide containing domain	NA|521aa|down_9|NC_020546.1_160623_162186_+	pfam17802, SpaA, Prealbumin-like fold domain
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	6	181625-182087	5	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GTTGTGTGTGTCTTGGCATGCGT	23	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|228aa|down_9|NC_020546.1_193353_194037_+	NA|395aa|up_9|NC_020546.1_168321_169506_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|158aa|up_8|NC_020546.1_169549_170023_+	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B	NA|386aa|up_7|NC_020546.1_170134_171292_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|457aa|up_6|NC_020546.1_171719_173090_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|192aa|up_5|NC_020546.1_173259_173835_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|150aa|up_4|NC_020546.1_174054_174504_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|210aa|up_3|NC_020546.1_175023_175653_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|632aa|up_2|NC_020546.1_175869_177765_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|625aa|up_1|NC_020546.1_177855_179730_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|414aa|up_0|NC_020546.1_180278_181520_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|399aa|down_0|NC_020546.1_183019_184216_+	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|308aa|down_1|NC_020546.1_184474_185398_+	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|372aa|down_2|NC_020546.1_185400_186516_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|281aa|down_3|NC_020546.1_186517_187360_+	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|235aa|down_4|NC_020546.1_187352_188057_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|155aa|down_5|NC_020546.1_188238_188703_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|142aa|down_6|NC_020546.1_189025_189451_+	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|165aa|down_7|NC_020546.1_189992_190487_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|475aa|down_8|NC_020546.1_190843_192268_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|228aa|down_9|NC_020546.1_193353_194037_+	NA
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	7	239711-240324	6	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GGGTGTCATCTGTTGGGTTGTGTATGTCC	29	0	0	NA	NA	NA	8	8	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|216aa|up_6|NC_020546.1_229457_230105_-,NA|254aa|down_8|NC_020546.1_250667_251429_-	NA|582aa|up_9|NC_020546.1_223991_225737_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|405aa|up_8|NC_020546.1_226263_227478_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|282aa|up_7|NC_020546.1_227630_228476_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_6|NC_020546.1_229457_230105_-	NA	NA|437aa|up_5|NC_020546.1_230338_231649_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|410aa|up_4|NC_020546.1_231940_233170_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|447aa|up_3|NC_020546.1_233515_234856_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|428aa|up_2|NC_020546.1_235152_236436_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|up_1|NC_020546.1_236437_236776_+	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|611aa|up_0|NC_020546.1_237016_238849_+	PRK03381, PRK03381, PII uridylyl-transferase; Provisional	NA|459aa|down_0|NC_020546.1_240699_242076_+	TIGR00665, DnaB, replicative DNA helicase	NA|505aa|down_1|NC_020546.1_242077_243592_+	pfam08353, DUF1727, Domain of unknown function (DUF1727)	NA|266aa|down_2|NC_020546.1_243680_244478_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|76aa|down_3|NC_020546.1_244640_244868_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|659aa|down_4|NC_020546.1_244978_246955_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|352aa|down_5|NC_020546.1_247135_248191_+	cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|214aa|down_6|NC_020546.1_248345_248987_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|391aa|down_7|NC_020546.1_249151_250324_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_8|NC_020546.1_250667_251429_-	NA	NA|341aa|down_9|NC_020546.1_251418_252441_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	8	329020-329347	7	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GTTGTGTGATGTTTGGCTCACAAACTGGGTGGTT	34	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA	NA|132aa|up_9|NC_020546.1_313523_313919_+	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]	NA|403aa|up_8|NC_020546.1_314145_315354_-	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	NA|343aa|up_7|NC_020546.1_315529_316558_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|442aa|up_6|NC_020546.1_316982_318308_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|789aa|up_5|NC_020546.1_318723_321090_+	COG2815, COG2815, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|up_4|NC_020546.1_321646_322594_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|322aa|up_3|NC_020546.1_322865_323831_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|333aa|up_2|NC_020546.1_324014_325013_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|381aa|up_1|NC_020546.1_325237_326380_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|490aa|up_0|NC_020546.1_327489_328959_+	pfam02517, Abi, CAAX protease self-immunity	NA|261aa|down_0|NC_020546.1_329808_330591_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|470aa|down_1|NC_020546.1_331244_332654_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|214aa|down_2|NC_020546.1_332787_333429_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|282aa|down_3|NC_020546.1_333913_334759_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|482aa|down_4|NC_020546.1_334965_336411_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|460aa|down_5|NC_020546.1_336997_338377_-	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily	NA|353aa|down_6|NC_020546.1_338609_339668_-	cd01944, YegV_kinase_like, YegV-like sugar kinase	NA|65aa|down_7|NC_020546.1_339956_340151_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|835aa|down_8|NC_020546.1_341001_343506_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|196aa|down_9|NC_020546.1_343554_344142_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	9	520772-520846	8	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GGTTTGCGTAGACAGTTTGTATA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA	NA|730aa|up_9|NC_020546.1_498582_500772_+	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	NA|913aa|up_8|NC_020546.1_503611_506350_+	pfam18560, Lectin_like, Lectin like domain	NA|1224aa|up_7|NC_020546.1_506725_510397_+	NF033189, internalin_A, class 1 internalin InlA	NA|523aa|up_6|NC_020546.1_510969_512538_-	pfam00188, CAP, Cysteine-rich secretory protein family	NA|335aa|up_5|NC_020546.1_513154_514159_-	pfam07501, G5, G5 domain	NA|113aa|up_4|NC_020546.1_514711_515050_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_3|NC_020546.1_515512_516139_+	pfam16262, DUF4916, Domain of unknown function (DUF4916)	NA|274aa|up_2|NC_020546.1_516723_517545_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|371aa|up_1|NC_020546.1_517674_518787_+	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|542aa|up_0|NC_020546.1_519089_520715_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|138aa|down_0|NC_020546.1_520938_521352_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|390aa|down_1|NC_020546.1_521585_522755_+	COG4850, COG4850, Uncharacterized conserved protein [Function unknown]	NA|850aa|down_2|NC_020546.1_522891_525441_+	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|346aa|down_3|NC_020546.1_525661_526699_+	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|282aa|down_4|NC_020546.1_527301_528147_+	pfam05154, TM2, TM2 domain	NA|373aa|down_5|NC_020546.1_528158_529277_+	cd16443, LplA, lipoate-protein ligase	NA|240aa|down_6|NC_020546.1_529895_530615_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|709aa|down_7|NC_020546.1_530806_532933_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|391aa|down_8|NC_020546.1_533259_534432_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|824aa|down_9|NC_020546.1_534612_537084_-	pfam01841, Transglut_core, Transglutaminase-like superfamily
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	10	526909-527152	9	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GGTTGCGTATGCCCGGGCATGCGTG	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA	NA|335aa|up_9|NC_020546.1_513154_514159_-	pfam07501, G5, G5 domain	NA|113aa|up_8|NC_020546.1_514711_515050_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_7|NC_020546.1_515512_516139_+	pfam16262, DUF4916, Domain of unknown function (DUF4916)	NA|274aa|up_6|NC_020546.1_516723_517545_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|371aa|up_5|NC_020546.1_517674_518787_+	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|542aa|up_4|NC_020546.1_519089_520715_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|138aa|up_3|NC_020546.1_520938_521352_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|390aa|up_2|NC_020546.1_521585_522755_+	COG4850, COG4850, Uncharacterized conserved protein [Function unknown]	NA|850aa|up_1|NC_020546.1_522891_525441_+	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|346aa|up_0|NC_020546.1_525661_526699_+	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|282aa|down_0|NC_020546.1_527301_528147_+	pfam05154, TM2, TM2 domain	NA|373aa|down_1|NC_020546.1_528158_529277_+	cd16443, LplA, lipoate-protein ligase	NA|240aa|down_2|NC_020546.1_529895_530615_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|709aa|down_3|NC_020546.1_530806_532933_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|391aa|down_4|NC_020546.1_533259_534432_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|824aa|down_5|NC_020546.1_534612_537084_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|407aa|down_6|NC_020546.1_537107_538328_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|424aa|down_7|NC_020546.1_538371_539643_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|2063aa|down_8|NC_020546.1_539885_546074_-	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|467aa|down_9|NC_020546.1_546124_547525_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	11	561140-561231	10	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GATCCGGATGGCGACGGGCTGAC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|193aa|up_7|NC_020546.1_548671_549250_+,NA|90aa|up_0|NC_020546.1_559662_559932_-,NA|194aa|down_4|NC_020546.1_567976_568558_+	NA|2063aa|up_9|NC_020546.1_539885_546074_-	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|467aa|up_8|NC_020546.1_546124_547525_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|193aa|up_7|NC_020546.1_548671_549250_+	NA	NA|382aa|up_6|NC_020546.1_550130_551276_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|240aa|up_5|NC_020546.1_551505_552225_+	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|428aa|up_4|NC_020546.1_553669_554953_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate	NA|430aa|up_3|NC_020546.1_555079_556369_+	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	NA|91aa|up_2|NC_020546.1_556673_556946_+	PRK00194, PRK00194, ACT domain-containing protein	NA|455aa|up_1|NC_020546.1_557013_558378_+	PRK05313, PRK05313, hypothetical protein; Provisional	NA|90aa|up_0|NC_020546.1_559662_559932_-	NA	NA|361aa|down_0|NC_020546.1_564225_565308_+	cd13445, CDI_inhibitor_EC869_like, Inhibitor of the contact-dependent growth inhibition (CDI) system of Escherichia coli EC869, and related proteins	NA|79aa|down_1|NC_020546.1_565587_565824_+	COG4710, COG4710, Predicted DNA-binding protein with an HTH domain [General function prediction only]	NA|90aa|down_2|NC_020546.1_565807_566077_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|214aa|down_3|NC_020546.1_566344_566986_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|194aa|down_4|NC_020546.1_567976_568558_+	NA	NA|1190aa|down_5|NC_020546.1_568780_572350_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1378aa|down_6|NC_020546.1_572443_576577_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1067aa|down_7|NC_020546.1_577467_580668_+	TIGR04215, conserved_hypothetical_protein, choice-of-anchor A domain	NA|548aa|down_8|NC_020546.1_580775_582419_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|312aa|down_9|NC_020546.1_582428_583364_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	12	663783-664103	11	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GTGTGAGCCAATCCTCACACGGAGACCGG	29	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|269aa|up_9|NC_020546.1_649099_649906_-,NA|110aa|up_0|NC_020546.1_663220_663550_+,NA	NA|269aa|up_9|NC_020546.1_649099_649906_-	NA	NA|406aa|up_8|NC_020546.1_651898_653116_+	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme	NA|396aa|up_7|NC_020546.1_654437_655625_-	cd18079, S-AdoMet_synt, S-adenosylmethionine synthetase	NA|251aa|up_6|NC_020546.1_655765_656518_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|480aa|up_5|NC_020546.1_656739_658179_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|350aa|up_4|NC_020546.1_658520_659570_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|322aa|up_3|NC_020546.1_659812_660778_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|301aa|up_2|NC_020546.1_660774_661677_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|448aa|up_1|NC_020546.1_661678_663022_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|110aa|up_0|NC_020546.1_663220_663550_+	NA	NA|289aa|down_0|NC_020546.1_664269_665136_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|226aa|down_1|NC_020546.1_665125_665803_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|374aa|down_2|NC_020546.1_665799_666921_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|152aa|down_3|NC_020546.1_667297_667753_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|336aa|down_4|NC_020546.1_667819_668827_-	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains	NA|443aa|down_5|NC_020546.1_668921_670250_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|403aa|down_6|NC_020546.1_670252_671461_-	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|319aa|down_7|NC_020546.1_671776_672733_+	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|282aa|down_8|NC_020546.1_673054_673900_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|259aa|down_9|NC_020546.1_674338_675115_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	13	796539-803259	3,12,1,4,5,13	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRISPRCasFinder	no	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Type I-C, Type I-U?,Type I-U	ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT,ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT,ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT,ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT,ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT,ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT	33,33,33,33,33,33	0	0	NA	NA	NA:NA:NA:NA:NA:NA	94,97,100,94,94,97	100	TypeI-C,TypeI-U?,TypeI-U	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|242aa|up_5|NC_020546.1_789936_790662_-,NA|53aa|up_3|NC_020546.1_792534_792693_+,NA|99aa|up_1|NC_020546.1_793238_793535_+,NA|71aa|down_0|NC_020546.1_803306_803519_+,NA|55aa|down_1|NC_020546.1_803986_804151_+	DEDDh|345aa|up_9|NC_020546.1_783870_784905_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|368aa|up_8|NC_020546.1_785169_786273_-	COG4748, COG4748, Uncharacterized conserved protein [Function unknown]	NA|488aa|up_7|NC_020546.1_786776_788240_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|391aa|up_6|NC_020546.1_788686_789859_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|242aa|up_5|NC_020546.1_789936_790662_-	NA	NA|161aa|up_4|NC_020546.1_791719_792202_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|53aa|up_3|NC_020546.1_792534_792693_+	NA	NA|63aa|up_2|NC_020546.1_792689_792878_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|99aa|up_1|NC_020546.1_793238_793535_+	NA	NA|149aa|up_0|NC_020546.1_794663_795110_-	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|71aa|down_0|NC_020546.1_803306_803519_+	NA	NA|55aa|down_1|NC_020546.1_803986_804151_+	NA	cas3|822aa|down_2|NC_020546.1_804683_807149_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|234aa|down_3|NC_020546.1_807234_807936_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|649aa|down_4|NC_020546.1_807932_809879_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|286aa|down_5|NC_020546.1_810009_810867_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|240aa|down_6|NC_020546.1_810983_811703_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|down_7|NC_020546.1_811713_812745_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|down_8|NC_020546.1_812871_813162_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|169aa|down_9|NC_020546.1_813992_814499_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	14	818497-818668	6	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Type I-C, Type I-U?,Type I-U	TGTGAGGATTCGCTCACAAA--------CTGGGT	34	0	0	NA	NA	NA	2	2	TypeI-C,TypeI-U?,TypeI-U	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA	cas3|822aa|up_9|NC_020546.1_804683_807149_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|234aa|up_8|NC_020546.1_807234_807936_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|649aa|up_7|NC_020546.1_807932_809879_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|286aa|up_6|NC_020546.1_810009_810867_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|240aa|up_5|NC_020546.1_810983_811703_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_4|NC_020546.1_811713_812745_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_3|NC_020546.1_812871_813162_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|169aa|up_2|NC_020546.1_813992_814499_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|298aa|up_1|NC_020546.1_814510_815404_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|733aa|up_0|NC_020546.1_815835_818034_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|408aa|down_0|NC_020546.1_818946_820170_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|299aa|down_1|NC_020546.1_820365_821262_-	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|404aa|down_2|NC_020546.1_821356_822568_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|541aa|down_3|NC_020546.1_823079_824702_+	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|360aa|down_4|NC_020546.1_824920_826000_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|384aa|down_5|NC_020546.1_826001_827153_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|577aa|down_6|NC_020546.1_827190_828921_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|533aa|down_7|NC_020546.1_829318_830917_+	cd01087, Prolidase, Prolidase	NA|171aa|down_8|NC_020546.1_831238_831751_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|555aa|down_9|NC_020546.1_831912_833577_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	15	1015876-1016062	7	PILER-CR	no	cas3	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Unclear	CGCCATTGTGTGAGGATTCGCTCACACAACGACCGGTTGGG	41	0	0	NA	NA	NA	2	2	Unclear	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|164aa|down_7|NC_020546.1_1027234_1027726_-	NA|449aa|up_9|NC_020546.1_999469_1000816_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|266aa|up_8|NC_020546.1_1000898_1001696_+	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|266aa|up_7|NC_020546.1_1003422_1004220_-	pfam00529, HlyD, HlyD membrane-fusion protein of T1SS	NA|365aa|up_6|NC_020546.1_1004861_1005956_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|195aa|up_5|NC_020546.1_1007305_1007890_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|276aa|up_4|NC_020546.1_1008191_1009019_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|431aa|up_3|NC_020546.1_1009203_1010496_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|301aa|up_2|NC_020546.1_1010687_1011590_-	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|257aa|up_1|NC_020546.1_1011586_1012357_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|1081aa|up_0|NC_020546.1_1012561_1015804_+	pfam03699, UPF0182, Uncharacterized protein family (UPF0182)	NA|269aa|down_0|NC_020546.1_1016286_1017093_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|279aa|down_1|NC_020546.1_1017264_1018101_+	pfam06940, DUF1287, Domain of unknown function (DUF1287)	NA|367aa|down_2|NC_020546.1_1018447_1019548_+	pfam09084, NMT1, NMT1/THI5 like	NA|465aa|down_3|NC_020546.1_1019687_1021082_+	pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase	NA|179aa|down_4|NC_020546.1_1021269_1021806_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|200aa|down_5|NC_020546.1_1021968_1022568_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1191aa|down_6|NC_020546.1_1022557_1026130_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|164aa|down_7|NC_020546.1_1027234_1027726_-	NA	NA|434aa|down_8|NC_020546.1_1027970_1029272_+	PRK00077, eno, enolase; Provisional	NA|202aa|down_9|NC_020546.1_1029378_1029984_+	pfam04977, DivIC, Septum formation initiator
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	16	1391182-1391288	14	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GTTGCCATTGGCGCTACGCGGCGGCACAACGCAGTG	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|77aa|down_6|NC_020546.1_1400864_1401095_+	NA|867aa|up_9|NC_020546.1_1377291_1379892_-	pfam12029, DUF3516, Domain of unknown function (DUF3516)	NA|346aa|up_8|NC_020546.1_1380419_1381457_-	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|193aa|up_7|NC_020546.1_1381508_1382087_-	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function	NA|390aa|up_6|NC_020546.1_1382365_1383535_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|226aa|up_5|NC_020546.1_1383540_1384218_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|276aa|up_4|NC_020546.1_1384214_1385042_-	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold	NA|243aa|up_3|NC_020546.1_1385137_1385866_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|600aa|up_2|NC_020546.1_1386190_1387990_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|464aa|up_1|NC_020546.1_1388060_1389452_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|484aa|up_0|NC_020546.1_1389553_1391005_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|869aa|down_0|NC_020546.1_1391362_1393969_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|327aa|down_1|NC_020546.1_1394119_1395100_+	pfam00582, Usp, Universal stress protein family	NA|490aa|down_2|NC_020546.1_1395221_1396691_-	pfam11228, DUF3027, Protein of unknown function (DUF3027)	NA|130aa|down_3|NC_020546.1_1396696_1397086_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|592aa|down_4|NC_020546.1_1397188_1398964_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|249aa|down_5|NC_020546.1_1399212_1399959_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|77aa|down_6|NC_020546.1_1400864_1401095_+	NA	NA|98aa|down_7|NC_020546.1_1401222_1401516_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|542aa|down_8|NC_020546.1_1401808_1403434_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|68aa|down_9|NC_020546.1_1404098_1404302_-	COG1278, CspC, Cold shock proteins [Transcription]
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	17	1503696-1503800	15	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	CACGCGTCACGCGCGTGTCACAACG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|65aa|down_0|NC_020546.1_1506378_1506573_-,NA|176aa|down_1|NC_020546.1_1506938_1507466_-	NA|888aa|up_9|NC_020546.1_1488818_1491482_+	pfam09924, DUF2156, Uncharacterized conserved protein (DUF2156)	NA|308aa|up_8|NC_020546.1_1492068_1492992_-	cd01020, TroA_b, Metal binding protein TroA_b	NA|145aa|up_7|NC_020546.1_1493272_1493707_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|390aa|up_6|NC_020546.1_1493952_1495122_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|166aa|up_5|NC_020546.1_1495105_1495603_-	pfam00731, AIRC, AIR carboxylase	NA|638aa|up_4|NC_020546.1_1495846_1497760_+	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|490aa|up_3|NC_020546.1_1497814_1499284_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|406aa|up_2|NC_020546.1_1499280_1500498_-	pfam07705, CARDB, CARDB	NA|228aa|up_1|NC_020546.1_1500591_1501275_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|398aa|up_0|NC_020546.1_1502266_1503460_-	cd01117, YbiR_permease, Putative anion permease YbiR	NA|65aa|down_0|NC_020546.1_1506378_1506573_-	NA	NA|176aa|down_1|NC_020546.1_1506938_1507466_-	NA	NA|336aa|down_2|NC_020546.1_1507679_1508687_-	pfam14336, DUF4392, Domain of unknown function (DUF4392)	NA|588aa|down_3|NC_020546.1_1508789_1510553_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|593aa|down_4|NC_020546.1_1510549_1512328_-	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|269aa|down_5|NC_020546.1_1512324_1513131_-	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA	NA|278aa|down_6|NC_020546.1_1513224_1514058_-	PRK05463, PRK05463, putative hydro-lyase	NA|324aa|down_7|NC_020546.1_1514333_1515305_+	PRK07849, PRK07849, aminodeoxychorismate lyase	NA|700aa|down_8|NC_020546.1_1515326_1517426_-	PRK05667, dnaG, DNA primase; Validated	NA|429aa|down_9|NC_020546.1_1517565_1518852_-	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	18	1563757-1564075	16,8	CRISPRCasFinder,PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GATTGTGAGTCGCCACTCACAATCAGC,ACCGATTGTGAGTCGCCACTCACAATCAGCA	27,31	0	0	NA	NA	NA:NA	4,2	4	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|395aa|up_9|NC_020546.1_1552465_1553650_-,NA|397aa|up_7|NC_020546.1_1554341_1555532_-,NA|99aa|down_4|NC_020546.1_1571350_1571647_+	NA|395aa|up_9|NC_020546.1_1552465_1553650_-	NA	NA|184aa|up_8|NC_020546.1_1553646_1554198_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|397aa|up_7|NC_020546.1_1554341_1555532_-	NA	NA|251aa|up_6|NC_020546.1_1555789_1556542_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|up_5|NC_020546.1_1556517_1557921_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|284aa|up_4|NC_020546.1_1558385_1559237_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|up_3|NC_020546.1_1559257_1560250_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|312aa|up_2|NC_020546.1_1560567_1561503_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|310aa|up_1|NC_020546.1_1561715_1562645_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|160aa|up_0|NC_020546.1_1562973_1563453_-	pfam01668, SmpB, SmpB protein	NA|487aa|down_0|NC_020546.1_1565095_1566556_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|308aa|down_1|NC_020546.1_1566792_1567716_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|452aa|down_2|NC_020546.1_1567712_1569068_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|378aa|down_3|NC_020546.1_1569212_1570346_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|99aa|down_4|NC_020546.1_1571350_1571647_+	NA	NA|326aa|down_5|NC_020546.1_1572143_1573121_-	cd13203, FERM_C1_myosin_like, FERM domain C-lobe, repeat 1, of Myosin-like proteins	NA|330aa|down_6|NC_020546.1_1574269_1575259_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|122aa|down_7|NC_020546.1_1575438_1575804_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|431aa|down_8|NC_020546.1_1577278_1578571_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|260aa|down_9|NC_020546.1_1578851_1579631_-	cd01086, MetAP1, Methionine Aminopeptidase 1
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	19	1564192-1564517	17,9	CRISPRCasFinder,PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GATTGTGAGTCGCCACTCACAATCAGC,GATTGCGAGTCACCACTCACAATC	27,24	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|395aa|up_9|NC_020546.1_1552465_1553650_-,NA|397aa|up_7|NC_020546.1_1554341_1555532_-,NA|99aa|down_4|NC_020546.1_1571350_1571647_+	NA|395aa|up_9|NC_020546.1_1552465_1553650_-	NA	NA|184aa|up_8|NC_020546.1_1553646_1554198_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|397aa|up_7|NC_020546.1_1554341_1555532_-	NA	NA|251aa|up_6|NC_020546.1_1555789_1556542_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|up_5|NC_020546.1_1556517_1557921_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|284aa|up_4|NC_020546.1_1558385_1559237_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|up_3|NC_020546.1_1559257_1560250_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|312aa|up_2|NC_020546.1_1560567_1561503_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|310aa|up_1|NC_020546.1_1561715_1562645_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|160aa|up_0|NC_020546.1_1562973_1563453_-	pfam01668, SmpB, SmpB protein	NA|487aa|down_0|NC_020546.1_1565095_1566556_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|308aa|down_1|NC_020546.1_1566792_1567716_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|452aa|down_2|NC_020546.1_1567712_1569068_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|378aa|down_3|NC_020546.1_1569212_1570346_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|99aa|down_4|NC_020546.1_1571350_1571647_+	NA	NA|326aa|down_5|NC_020546.1_1572143_1573121_-	cd13203, FERM_C1_myosin_like, FERM domain C-lobe, repeat 1, of Myosin-like proteins	NA|330aa|down_6|NC_020546.1_1574269_1575259_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|122aa|down_7|NC_020546.1_1575438_1575804_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|431aa|down_8|NC_020546.1_1577278_1578571_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|260aa|down_9|NC_020546.1_1578851_1579631_-	cd01086, MetAP1, Methionine Aminopeptidase 1
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	20	1570415-1570584	18	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GATTGTGAGTCAGCACTCACAAT	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|99aa|down_0|NC_020546.1_1571350_1571647_+	NA|468aa|up_9|NC_020546.1_1556517_1557921_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|284aa|up_8|NC_020546.1_1558385_1559237_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|up_7|NC_020546.1_1559257_1560250_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|312aa|up_6|NC_020546.1_1560567_1561503_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|310aa|up_5|NC_020546.1_1561715_1562645_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|160aa|up_4|NC_020546.1_1562973_1563453_-	pfam01668, SmpB, SmpB protein	NA|487aa|up_3|NC_020546.1_1565095_1566556_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|308aa|up_2|NC_020546.1_1566792_1567716_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|452aa|up_1|NC_020546.1_1567712_1569068_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|378aa|up_0|NC_020546.1_1569212_1570346_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|99aa|down_0|NC_020546.1_1571350_1571647_+	NA	NA|326aa|down_1|NC_020546.1_1572143_1573121_-	cd13203, FERM_C1_myosin_like, FERM domain C-lobe, repeat 1, of Myosin-like proteins	NA|330aa|down_2|NC_020546.1_1574269_1575259_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|122aa|down_3|NC_020546.1_1575438_1575804_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|431aa|down_4|NC_020546.1_1577278_1578571_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|260aa|down_5|NC_020546.1_1578851_1579631_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|227aa|down_6|NC_020546.1_1579773_1580454_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|693aa|down_7|NC_020546.1_1580658_1582737_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NC_020546.1_1582914_1583550_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|607aa|down_9|NC_020546.1_1584331_1586152_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	21	1570646-1570741	19	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GATTGTGAGTCAGCACTCACAAT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|99aa|down_0|NC_020546.1_1571350_1571647_+	NA|468aa|up_9|NC_020546.1_1556517_1557921_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|284aa|up_8|NC_020546.1_1558385_1559237_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|up_7|NC_020546.1_1559257_1560250_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|312aa|up_6|NC_020546.1_1560567_1561503_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|310aa|up_5|NC_020546.1_1561715_1562645_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|160aa|up_4|NC_020546.1_1562973_1563453_-	pfam01668, SmpB, SmpB protein	NA|487aa|up_3|NC_020546.1_1565095_1566556_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|308aa|up_2|NC_020546.1_1566792_1567716_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|452aa|up_1|NC_020546.1_1567712_1569068_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|378aa|up_0|NC_020546.1_1569212_1570346_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|99aa|down_0|NC_020546.1_1571350_1571647_+	NA	NA|326aa|down_1|NC_020546.1_1572143_1573121_-	cd13203, FERM_C1_myosin_like, FERM domain C-lobe, repeat 1, of Myosin-like proteins	NA|330aa|down_2|NC_020546.1_1574269_1575259_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|122aa|down_3|NC_020546.1_1575438_1575804_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|431aa|down_4|NC_020546.1_1577278_1578571_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|260aa|down_5|NC_020546.1_1578851_1579631_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|227aa|down_6|NC_020546.1_1579773_1580454_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|693aa|down_7|NC_020546.1_1580658_1582737_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NC_020546.1_1582914_1583550_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|607aa|down_9|NC_020546.1_1584331_1586152_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	22	1570889-1570984	20	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GATTGTGAGTCAGCACTCACAAT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|99aa|down_0|NC_020546.1_1571350_1571647_+	NA|468aa|up_9|NC_020546.1_1556517_1557921_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|284aa|up_8|NC_020546.1_1558385_1559237_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|up_7|NC_020546.1_1559257_1560250_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|312aa|up_6|NC_020546.1_1560567_1561503_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|310aa|up_5|NC_020546.1_1561715_1562645_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|160aa|up_4|NC_020546.1_1562973_1563453_-	pfam01668, SmpB, SmpB protein	NA|487aa|up_3|NC_020546.1_1565095_1566556_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|308aa|up_2|NC_020546.1_1566792_1567716_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|452aa|up_1|NC_020546.1_1567712_1569068_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|378aa|up_0|NC_020546.1_1569212_1570346_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|99aa|down_0|NC_020546.1_1571350_1571647_+	NA	NA|326aa|down_1|NC_020546.1_1572143_1573121_-	cd13203, FERM_C1_myosin_like, FERM domain C-lobe, repeat 1, of Myosin-like proteins	NA|330aa|down_2|NC_020546.1_1574269_1575259_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|122aa|down_3|NC_020546.1_1575438_1575804_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|431aa|down_4|NC_020546.1_1577278_1578571_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|260aa|down_5|NC_020546.1_1578851_1579631_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|227aa|down_6|NC_020546.1_1579773_1580454_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|693aa|down_7|NC_020546.1_1580658_1582737_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NC_020546.1_1582914_1583550_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|607aa|down_9|NC_020546.1_1584331_1586152_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	23	1576074-1576608	21	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	TGGTTGTGAGTCGTCGCTCACAA	23	0	0	NA	NA	NA	7	7	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|99aa|up_3|NC_020546.1_1571350_1571647_+,NA	NA|310aa|up_9|NC_020546.1_1561715_1562645_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|160aa|up_8|NC_020546.1_1562973_1563453_-	pfam01668, SmpB, SmpB protein	NA|487aa|up_7|NC_020546.1_1565095_1566556_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|308aa|up_6|NC_020546.1_1566792_1567716_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|452aa|up_5|NC_020546.1_1567712_1569068_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|378aa|up_4|NC_020546.1_1569212_1570346_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|99aa|up_3|NC_020546.1_1571350_1571647_+	NA	NA|326aa|up_2|NC_020546.1_1572143_1573121_-	cd13203, FERM_C1_myosin_like, FERM domain C-lobe, repeat 1, of Myosin-like proteins	NA|330aa|up_1|NC_020546.1_1574269_1575259_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|122aa|up_0|NC_020546.1_1575438_1575804_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|431aa|down_0|NC_020546.1_1577278_1578571_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|260aa|down_1|NC_020546.1_1578851_1579631_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|227aa|down_2|NC_020546.1_1579773_1580454_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|693aa|down_3|NC_020546.1_1580658_1582737_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_4|NC_020546.1_1582914_1583550_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|607aa|down_5|NC_020546.1_1584331_1586152_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|534aa|down_6|NC_020546.1_1587033_1588635_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|330aa|down_7|NC_020546.1_1588881_1589871_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|314aa|down_8|NC_020546.1_1589880_1590822_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|234aa|down_9|NC_020546.1_1590952_1591654_+	COG5578, COG5578, Predicted integral membrane protein [Function unknown]
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	24	1810491-1810565	22	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	ATAACATCACAAACCACGCACGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|68aa|down_1|NC_020546.1_1811808_1812012_-	NA|400aa|up_9|NC_020546.1_1797679_1798879_-	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|57aa|up_8|NC_020546.1_1798997_1799168_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|360aa|up_7|NC_020546.1_1799702_1800782_-	PRK03321, PRK03321, putative aminotransferase; Provisional	NA|1443aa|up_6|NC_020546.1_1800882_1805211_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|324aa|up_5|NC_020546.1_1805216_1806188_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|98aa|up_4|NC_020546.1_1806337_1806631_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|445aa|up_3|NC_020546.1_1806817_1808152_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|226aa|up_2|NC_020546.1_1808311_1808989_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|210aa|up_1|NC_020546.1_1809232_1809862_+	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]	NA|64aa|up_0|NC_020546.1_1809977_1810169_+	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_0|NC_020546.1_1810866_1811718_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|68aa|down_1|NC_020546.1_1811808_1812012_-	NA	NA|1205aa|down_2|NC_020546.1_1812012_1815627_-	pfam18741, MTES_1575, REase_MTES_1575	NA|128aa|down_3|NC_020546.1_1818076_1818460_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|174aa|down_4|NC_020546.1_1818572_1819094_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|184aa|down_5|NC_020546.1_1819325_1819877_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|465aa|down_6|NC_020546.1_1819969_1821364_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|328aa|down_7|NC_020546.1_1821683_1822667_+	pfam18741, MTES_1575, REase_MTES_1575	NA|260aa|down_8|NC_020546.1_1823401_1824181_-	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional	NA|338aa|down_9|NC_020546.1_1824229_1825243_-	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	25	1872037-1872349	2,10	CRT,PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	TGTGAGCCAATCCTCACACAAC,TGTGAGCCAATCCTCACACAAC	22,22	0	0	NA	NA	NA:NA	4,3	4	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|214aa|up_8|NC_020546.1_1851107_1851749_-,NA|726aa|down_0|NC_020546.1_1872433_1874611_+	NA|90aa|up_9|NC_020546.1_1850692_1850962_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|214aa|up_8|NC_020546.1_1851107_1851749_-	NA	NA|604aa|up_7|NC_020546.1_1852807_1854619_-	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|174aa|up_6|NC_020546.1_1854759_1855281_-	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]	NA|464aa|up_5|NC_020546.1_1855349_1856741_-	pfam02517, Abi, CAAX protease self-immunity	NA|3135aa|up_4|NC_020546.1_1856994_1866399_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|531aa|up_3|NC_020546.1_1866482_1868075_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|626aa|up_2|NC_020546.1_1868071_1869949_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|210aa|up_1|NC_020546.1_1870207_1870837_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|280aa|up_0|NC_020546.1_1871037_1871877_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|726aa|down_0|NC_020546.1_1872433_1874611_+	NA	NA|340aa|down_1|NC_020546.1_1874620_1875640_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|232aa|down_2|NC_020546.1_1875928_1876624_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|down_3|NC_020546.1_1876638_1877070_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|290aa|down_4|NC_020546.1_1877422_1878292_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|75aa|down_5|NC_020546.1_1878318_1878543_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_6|NC_020546.1_1878888_1880094_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|378aa|down_7|NC_020546.1_1880355_1881489_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|566aa|down_8|NC_020546.1_1881488_1883186_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_9|NC_020546.1_1883456_1883708_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	26	1922105-1922346	23	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	GTGCGAGCCGATCCTCACACAACG	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|69aa|down_1|NC_020546.1_1924912_1925119_+,NA|248aa|down_7|NC_020546.1_1933016_1933760_-	NA|235aa|up_9|NC_020546.1_1912339_1913044_-	PRK03298, PRK03298, endonuclease NucS	NA|104aa|up_8|NC_020546.1_1913316_1913628_-	PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional	NA|495aa|up_7|NC_020546.1_1913627_1915112_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|307aa|up_6|NC_020546.1_1915120_1916041_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|543aa|up_5|NC_020546.1_1916044_1917673_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|276aa|up_4|NC_020546.1_1917751_1918579_-	PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional	NA|176aa|up_3|NC_020546.1_1918598_1919126_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|77aa|up_2|NC_020546.1_1919190_1919421_-	PRK07874, PRK07874, ATP synthase F0 subunit C	NA|271aa|up_1|NC_020546.1_1919642_1920455_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|371aa|up_0|NC_020546.1_1920747_1921860_-	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional	NA|391aa|down_0|NC_020546.1_1923599_1924772_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|69aa|down_1|NC_020546.1_1924912_1925119_+	NA	NA|521aa|down_2|NC_020546.1_1925829_1927392_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|336aa|down_3|NC_020546.1_1927479_1928487_+	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|736aa|down_4|NC_020546.1_1928715_1930923_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|166aa|down_5|NC_020546.1_1931038_1931536_+	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|195aa|down_6|NC_020546.1_1931981_1932566_+	pfam02659, Mntp, Putative manganese efflux pump	NA|248aa|down_7|NC_020546.1_1933016_1933760_-	NA	NA|247aa|down_8|NC_020546.1_1934011_1934752_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|223aa|down_9|NC_020546.1_1935156_1935825_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	27	1934817-1935054	11	PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	TGTGTGAGGATTGGCTCGCA	20	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|69aa|up_7|NC_020546.1_1924912_1925119_+,NA|248aa|up_1|NC_020546.1_1933016_1933760_-,NA|650aa|down_3|NC_020546.1_1940672_1942622_-	NA|371aa|up_9|NC_020546.1_1920747_1921860_-	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional	NA|391aa|up_8|NC_020546.1_1923599_1924772_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|69aa|up_7|NC_020546.1_1924912_1925119_+	NA	NA|521aa|up_6|NC_020546.1_1925829_1927392_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|336aa|up_5|NC_020546.1_1927479_1928487_+	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|736aa|up_4|NC_020546.1_1928715_1930923_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|166aa|up_3|NC_020546.1_1931038_1931536_+	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|195aa|up_2|NC_020546.1_1931981_1932566_+	pfam02659, Mntp, Putative manganese efflux pump	NA|248aa|up_1|NC_020546.1_1933016_1933760_-	NA	NA|247aa|up_0|NC_020546.1_1934011_1934752_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|223aa|down_0|NC_020546.1_1935156_1935825_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|520aa|down_1|NC_020546.1_1935951_1937511_+	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|928aa|down_2|NC_020546.1_1937721_1940505_+	NF000540, alt_ValS, valine--tRNA ligase	NA|650aa|down_3|NC_020546.1_1940672_1942622_-	NA	NA|131aa|down_4|NC_020546.1_1942776_1943169_-	PRK09239, PRK09239, chorismate mutase; Provisional	NA|685aa|down_5|NC_020546.1_1943392_1945447_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|530aa|down_6|NC_020546.1_1945769_1947359_-	PRK07208, PRK07208, hypothetical protein; Provisional	NA|105aa|down_7|NC_020546.1_1947506_1947821_-	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|403aa|down_8|NC_020546.1_1947817_1949026_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|499aa|down_9|NC_020546.1_1949391_1950888_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	28	2189826-2190070	24	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	ACGCATGCCGAGACATACGCAACAT	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|509aa|up_3|NC_020546.1_2183138_2184665_-,NA|742aa|down_8|NC_020546.1_2205397_2207623_+	NA|365aa|up_9|NC_020546.1_2174948_2176043_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|266aa|up_8|NC_020546.1_2176191_2176989_-	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|869aa|up_7|NC_020546.1_2177185_2179792_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|356aa|up_6|NC_020546.1_2179805_2180873_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|303aa|up_5|NC_020546.1_2180930_2181839_-	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH	NA|191aa|up_4|NC_020546.1_2182381_2182954_+	pfam04260, DUF436, Protein of unknown function (DUF436)	NA|509aa|up_3|NC_020546.1_2183138_2184665_-	NA	NA|846aa|up_2|NC_020546.1_2185089_2187627_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|233aa|up_1|NC_020546.1_2187864_2188563_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|210aa|up_0|NC_020546.1_2188779_2189409_-	pfam09819, ABC_cobalt, ABC-type cobalt transport system, permease component	NA|457aa|down_0|NC_020546.1_2190336_2191707_-	PRK07907, PRK07907, hypothetical protein; Provisional	NA|209aa|down_1|NC_020546.1_2191889_2192516_+	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|493aa|down_2|NC_020546.1_2192740_2194219_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|264aa|down_3|NC_020546.1_2194368_2195160_+	pfam13829, DUF4191, Domain of unknown function (DUF4191)	NA|479aa|down_4|NC_020546.1_2195518_2196955_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|383aa|down_5|NC_020546.1_2197279_2198428_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|928aa|down_6|NC_020546.1_2198636_2201420_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|1217aa|down_7|NC_020546.1_2201686_2205337_-	sd00006, TPR, Tetratricopeptide repeat	NA|742aa|down_8|NC_020546.1_2205397_2207623_+	NA	NA|267aa|down_9|NC_020546.1_2207619_2208420_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system
GCF_000347695.1_ASM34769v1	NC_020546	Bifidobacterium thermophilum RBL67, complete sequence	29	2252558-2252804	25,12	CRISPRCasFinder,PILER-CR	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	CCCCACTGTGTGAGCCAATCCTCACA,TGTGTGAGCCAATCCTCACACA	26,22	0	0	NA	NA	NA:NA	3,3	3	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA|446aa|down_1|NC_020546.1_2253672_2255010_-	NA|228aa|up_9|NC_020546.1_2236856_2237540_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|414aa|up_8|NC_020546.1_2237536_2238778_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|731aa|up_7|NC_020546.1_2239304_2241497_+	COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]	NA|251aa|up_6|NC_020546.1_2241564_2242317_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|300aa|up_5|NC_020546.1_2242756_2243656_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|482aa|up_4|NC_020546.1_2244085_2245531_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|206aa|up_3|NC_020546.1_2245681_2246299_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|282aa|up_2|NC_020546.1_2246333_2247179_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|738aa|up_1|NC_020546.1_2247507_2249721_+	pfam02065, Melibiase, Melibiase	NA|144aa|up_0|NC_020546.1_2249753_2250185_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|247aa|down_0|NC_020546.1_2252864_2253605_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|446aa|down_1|NC_020546.1_2253672_2255010_-	NA	NA|999aa|down_2|NC_020546.1_2255344_2258341_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|337aa|down_3|NC_020546.1_2258597_2259608_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|495aa|down_4|NC_020546.1_2259755_2261240_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|376aa|down_5|NC_020546.1_2261363_2262491_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|754aa|down_6|NC_020546.1_2263213_2265475_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|331aa|down_7|NC_020546.1_2265612_2266605_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|519aa|down_8|NC_020546.1_2267629_2269186_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|319aa|down_9|NC_020546.1_2269236_2270193_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
