assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000347675.2_ASM34767v2	NC_020561	Sphingomonas sp. MM-1, complete sequence	1	157341-157431	1	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	Orphan	GGGGAGGGAGGCTGGCGAAATGGCGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA,NA	NA|700aa|up_9|NC_020561.1_144733_146833_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|606aa|up_8|NC_020561.1_146905_148723_-	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_020561.1_148839_149304_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|334aa|up_6|NC_020561.1_149339_150341_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|324aa|up_5|NC_020561.1_150459_151431_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|536aa|up_4|NC_020561.1_151447_153055_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|141aa|up_3|NC_020561.1_153054_153477_-	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|492aa|up_2|NC_020561.1_153476_154952_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|404aa|up_1|NC_020561.1_155062_156274_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|283aa|up_0|NC_020561.1_156273_157122_+	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR	NA|158aa|down_0|NC_020561.1_157497_157971_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|291aa|down_1|NC_020561.1_158566_159439_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|416aa|down_2|NC_020561.1_159486_160734_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|249aa|down_3|NC_020561.1_160730_161477_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|196aa|down_4|NC_020561.1_161461_162049_-	pfam07110, EthD, EthD domain	NA|138aa|down_5|NC_020561.1_162182_162596_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|350aa|down_6|NC_020561.1_162892_163942_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|265aa|down_7|NC_020561.1_164199_164994_+	pfam07589, VPEP, PEP-CTERM motif	NA|294aa|down_8|NC_020561.1_165051_165933_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|239aa|down_9|NC_020561.1_166102_166819_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC
GCF_000347675.2_ASM34767v2	NC_020561	Sphingomonas sp. MM-1, complete sequence	2	1587617-1587795	1	PILER-CR	no		csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	Orphan	TGGAGGCCGGAGCCGGGGTGGGCGCAGGCGCGGCGGCGGGCGCCTCGGCCACGG	54	0	0	NA	NA	NA	2	2	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|91aa|up_7|NC_020561.1_1578826_1579099_+,NA|146aa|up_3|NC_020561.1_1582937_1583375_-,NA|220aa|down_5|NC_020561.1_1593696_1594356_-	NA|212aa|up_9|NC_020561.1_1576968_1577604_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|140aa|up_8|NC_020561.1_1577703_1578123_+	PRK13952, mscL, large conductance mechanosensitive channel protein MscL	NA|91aa|up_7|NC_020561.1_1578826_1579099_+	NA	NA|775aa|up_6|NC_020561.1_1579186_1581511_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|90aa|up_5|NC_020561.1_1581708_1581978_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|299aa|up_4|NC_020561.1_1581983_1582880_-	PRK05389, truB, tRNA pseudouridine synthase B; Provisional	NA|146aa|up_3|NC_020561.1_1582937_1583375_-	NA	NA|187aa|up_2|NC_020561.1_1583408_1583969_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|194aa|up_1|NC_020561.1_1583961_1584543_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|144aa|up_0|NC_020561.1_1584827_1585259_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|268aa|down_0|NC_020561.1_1588054_1588858_-	PRK09190, PRK09190, RNA-binding protein	NA|536aa|down_1|NC_020561.1_1588844_1590452_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|177aa|down_2|NC_020561.1_1590461_1590992_-	PRK14636, PRK14636, ribosome maturation protein RimP	NA|411aa|down_3|NC_020561.1_1591198_1592431_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|383aa|down_4|NC_020561.1_1592523_1593672_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|220aa|down_5|NC_020561.1_1593696_1594356_-	NA	NA|190aa|down_6|NC_020561.1_1594644_1595214_+	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|136aa|down_7|NC_020561.1_1595284_1595692_-	pfam07845, DUF1636, Protein of unknown function (DUF1636)	NA|653aa|down_8|NC_020561.1_1595706_1597665_-	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|259aa|down_9|NC_020561.1_1598012_1598789_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
GCF_000347675.2_ASM34767v2	NC_020561	Sphingomonas sp. MM-1, complete sequence	3	1616584-1618020	2,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas9,cas1,cas2	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	Type II-C,Type II-A, Type II-B,Type II-B, or Type II-C?	AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC,AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC,AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC,AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	21,21,18,18	21	TypeII-C,TypeII-A,TypeII-B,TypeII-B,orTypeII-C?	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|82aa|up_8|NC_020561.1_1605677_1605923_-,NA|158aa|up_6|NC_020561.1_1609430_1609904_+,NA|223aa|up_3|NC_020561.1_1611246_1611915_+,NA|230aa|down_1|NC_020561.1_1621636_1622326_-,NA|104aa|down_4|NC_020561.1_1623956_1624268_-	NA|261aa|up_9|NC_020561.1_1604891_1605674_-	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|82aa|up_8|NC_020561.1_1605677_1605923_-	NA	NA|1055aa|up_7|NC_020561.1_1606278_1609443_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|158aa|up_6|NC_020561.1_1609430_1609904_+	NA	NA|189aa|up_5|NC_020561.1_1610145_1610712_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|64aa|up_4|NC_020561.1_1610738_1610930_+	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392	NA|223aa|up_3|NC_020561.1_1611246_1611915_+	NA	cas9|1054aa|up_2|NC_020561.1_1612172_1615334_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|301aa|up_1|NC_020561.1_1615291_1616194_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|110aa|up_0|NC_020561.1_1616195_1616525_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|1131aa|down_0|NC_020561.1_1618109_1621502_-	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|230aa|down_1|NC_020561.1_1621636_1622326_-	NA	NA|331aa|down_2|NC_020561.1_1622336_1623329_-	pfam03389, MobA_MobL, MobA/MobL family	NA|154aa|down_3|NC_020561.1_1623356_1623818_-	pfam03389, MobA_MobL, MobA/MobL family	NA|104aa|down_4|NC_020561.1_1623956_1624268_-	NA	NA|329aa|down_5|NC_020561.1_1624323_1625310_-	pfam12281, NTP_transf_8, Nucleotidyltransferase	NA|74aa|down_6|NC_020561.1_1625486_1625708_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|75aa|down_7|NC_020561.1_1625790_1626015_+	cd17793, HipA, type II toxin-antitoxin sytem toxin HipA and similar proteins	NA|117aa|down_8|NC_020561.1_1626087_1626438_+	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins	NA|622aa|down_9|NC_020561.1_1628225_1630091_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional
GCF_000347675.2_ASM34767v2	NC_020561	Sphingomonas sp. MM-1, complete sequence	4	1787810-1787889	3	CRISPRCasFinder	no	DinG	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	Type IV-A	GACGTTGGTTGCGGGGACAGGAT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|128aa|up_5|NC_020561.1_1780605_1780989_+,NA|121aa|down_0|NC_020561.1_1793365_1793728_+,NA|99aa|down_2|NC_020561.1_1794412_1794709_+,NA|73aa|down_9|NC_020561.1_1800586_1800805_-	NA|99aa|up_9|NC_020561.1_1776616_1776913_+	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392	NA|151aa|up_8|NC_020561.1_1776909_1777362_+	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|305aa|up_7|NC_020561.1_1777379_1778294_+	smart00748, HEPN, Higher Eukarytoes and Prokaryotes Nucleotide-binding domain	NA|452aa|up_6|NC_020561.1_1779130_1780486_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|128aa|up_5|NC_020561.1_1780605_1780989_+	NA	NA|99aa|up_4|NC_020561.1_1781301_1781598_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|356aa|up_3|NC_020561.1_1782542_1783610_-	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR)	NA|337aa|up_2|NC_020561.1_1783671_1784682_+	pfam12852, Cupin_6, Cupin	NA|372aa|up_1|NC_020561.1_1784791_1785907_-	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family	NA|444aa|up_0|NC_020561.1_1786139_1787471_+	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|121aa|down_0|NC_020561.1_1793365_1793728_+	NA	NA|143aa|down_1|NC_020561.1_1793904_1794333_-	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes	NA|99aa|down_2|NC_020561.1_1794412_1794709_+	NA	NA|131aa|down_3|NC_020561.1_1794705_1795098_+	cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT)	NA|263aa|down_4|NC_020561.1_1795113_1795902_-	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|185aa|down_5|NC_020561.1_1796070_1796625_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|305aa|down_6|NC_020561.1_1796717_1797632_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|144aa|down_7|NC_020561.1_1797852_1798284_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|613aa|down_8|NC_020561.1_1798387_1800226_+	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|73aa|down_9|NC_020561.1_1800586_1800805_-	NA
GCF_000347675.2_ASM34767v2	NC_020561	Sphingomonas sp. MM-1, complete sequence	5	2786536-2786630	4	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	Orphan	GCCGCCGGCGCGCTGCTGGGCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|181aa|up_3|NC_020561.1_2779509_2780052_-,NA|301aa|down_0|NC_020561.1_2786713_2787616_-	NA|634aa|up_9|NC_020561.1_2771215_2773117_+	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha	NA|254aa|up_8|NC_020561.1_2773204_2773965_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|224aa|up_7|NC_020561.1_2774609_2775281_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|401aa|up_6|NC_020561.1_2775277_2776480_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|484aa|up_5|NC_020561.1_2776637_2778089_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|438aa|up_4|NC_020561.1_2778064_2779378_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|181aa|up_3|NC_020561.1_2779509_2780052_-	NA	NA|1079aa|up_2|NC_020561.1_2780327_2783564_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|320aa|up_1|NC_020561.1_2783835_2784795_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|424aa|up_0|NC_020561.1_2784885_2786157_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|301aa|down_0|NC_020561.1_2786713_2787616_-	NA	NA|198aa|down_1|NC_020561.1_2787733_2788327_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|231aa|down_2|NC_020561.1_2788406_2789099_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|832aa|down_3|NC_020561.1_2789095_2791591_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|260aa|down_4|NC_020561.1_2791607_2792387_-	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|353aa|down_5|NC_020561.1_2792445_2793504_-	COG1565, COG1565, Uncharacterized conserved protein [Function unknown]	NA|289aa|down_6|NC_020561.1_2793520_2794387_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|558aa|down_7|NC_020561.1_2794484_2796158_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|739aa|down_8|NC_020561.1_2796233_2798450_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|336aa|down_9|NC_020561.1_2798446_2799454_+	PRK00035, hemH, ferrochelatase; Reviewed
GCF_000347675.2_ASM34767v2	NC_020561	Sphingomonas sp. MM-1, complete sequence	6	3573522-3573620	5	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	Orphan	CCGCCGGCCTTCCGTTTCAGCCGCGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|88aa|up_1|NC_020561.1_3572071_3572335_+,NA|149aa|down_7|NC_020561.1_3583856_3584303_-	NA|138aa|up_9|NC_020561.1_3565688_3566102_-	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional	NA|240aa|up_8|NC_020561.1_3566354_3567074_-	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like	NA|223aa|up_7|NC_020561.1_3567066_3567735_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|272aa|up_6|NC_020561.1_3567735_3568551_-	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|216aa|up_5|NC_020561.1_3568635_3569283_-	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|235aa|up_4|NC_020561.1_3569287_3569992_-	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|364aa|up_3|NC_020561.1_3570056_3571148_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|135aa|up_2|NC_020561.1_3571365_3571770_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|88aa|up_1|NC_020561.1_3572071_3572335_+	NA	NA|351aa|up_0|NC_020561.1_3572440_3573493_+	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|217aa|down_0|NC_020561.1_3574603_3575254_+	cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S	NA|147aa|down_1|NC_020561.1_3575276_3575717_-	pfam11196, DUF2834, Protein of unknown function (DUF2834)	NA|712aa|down_2|NC_020561.1_3576026_3578162_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|255aa|down_3|NC_020561.1_3578653_3579418_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|399aa|down_4|NC_020561.1_3579490_3580687_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|430aa|down_5|NC_020561.1_3580918_3582208_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|476aa|down_6|NC_020561.1_3582317_3583745_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|149aa|down_7|NC_020561.1_3583856_3584303_-	NA	NA|483aa|down_8|NC_020561.1_3584408_3585857_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|259aa|down_9|NC_020561.1_3585975_3586752_+	pfam07277, SapC, SapC
GCF_000347675.2_ASM34767v2	NC_020562	Sphingomonas sp. MM-1 plasmid pISP1, complete sequence	1	159505-159594	1	CRISPRCasFinder	no		csa3	Orphan	GACTCGACCCCAAAACTCACTTTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|121aa|up_8|NC_020562.1_148826_149189_+,NA|231aa|up_3|NC_020562.1_155815_156508_+,NA|94aa|up_1|NC_020562.1_158138_158420_+,NA|241aa|down_3|NC_020562.1_165215_165938_+,NA|454aa|down_4|NC_020562.1_167085_168447_-	NA|229aa|up_9|NC_020562.1_148140_148827_+	pfam07110, EthD, EthD domain	NA|121aa|up_8|NC_020562.1_148826_149189_+	NA	NA|255aa|up_7|NC_020562.1_149286_150051_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|up_6|NC_020562.1_150753_151512_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|255aa|up_5|NC_020562.1_152685_153450_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|199aa|up_4|NC_020562.1_155053_155650_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|231aa|up_3|NC_020562.1_155815_156508_+	NA	NA|212aa|up_2|NC_020562.1_157477_158113_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|94aa|up_1|NC_020562.1_158138_158420_+	NA	NA|304aa|up_0|NC_020562.1_158476_159388_-	pfam01051, Rep_3, Initiator Replication protein	NA|75aa|down_0|NC_020562.1_161333_161558_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|102aa|down_1|NC_020562.1_161595_161901_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|1045aa|down_2|NC_020562.1_162073_165208_+	PRK13889, PRK13889, conjugal transfer relaxase TraA; Provisional	NA|241aa|down_3|NC_020562.1_165215_165938_+	NA	NA|454aa|down_4|NC_020562.1_167085_168447_-	NA	NA|198aa|down_5|NC_020562.1_168443_169037_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|977aa|down_6|NC_020562.1_169183_172114_+	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000347675.2_ASM34767v2	NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	1	33078-33167	1	CRISPRCasFinder	no			Orphan	AAAAGTGAGTTTTGGGGTCGAGTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,DinG,DEDDh,RT,WYL	NA|85aa|up_7|NC_020563.2_19932_20187_-,NA|454aa|up_4|NC_020563.2_24224_25586_+,NA|241aa|up_3|NC_020563.2_26733_27456_-,NA	NA|255aa|up_9|NC_020563.2_18032_18797_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|297aa|up_8|NC_020563.2_18956_19847_-	PRK03592, PRK03592, haloalkane dehalogenase; Provisional	NA|85aa|up_7|NC_020563.2_19932_20187_-	NA	NA|977aa|up_6|NC_020563.2_20557_23488_-	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|198aa|up_5|NC_020563.2_23634_24228_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|454aa|up_4|NC_020563.2_24224_25586_+	NA	NA|241aa|up_3|NC_020563.2_26733_27456_-	NA	NA|1045aa|up_2|NC_020563.2_27463_30598_-	PRK13889, PRK13889, conjugal transfer relaxase TraA; Provisional	NA|102aa|up_1|NC_020563.2_30770_31076_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|75aa|up_0|NC_020563.2_31113_31338_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
