The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020561	Sphingomonas sp. MM-1, complete sequence	4054833	641969	650998	4054833		Tupanvirus(16.67%)	8	NA	NA
WP_051128789.1|641969_643436_-	acyl-CoA ligase (AMP-forming), exosortase A system-associated	NA	A0A2K9KZV5	Tupanvirus	23.3	3.9e-19
WP_015457347.1|643631_643907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187294048.1|643927_644875_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	43.9	2.3e-65
WP_015457349.1|645303_645576_-	HU family DNA-binding protein	NA	Q6QIE5	Burkholderia_phage	60.7	4.2e-20
WP_015457350.1|645803_648203_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.2	7.7e-206
WP_015457351.1|648417_648978_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	32.6	4.2e-22
WP_015457352.1|649107_649407_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_015457353.1|649486_650998_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	38.0	1.7e-73
>prophage 2
NC_020561	Sphingomonas sp. MM-1, complete sequence	4054833	1047135	1072457	4054833	head,portal,integrase,capsid,protease,terminase	Rhizobium_phage(30.77%)	45	1043612:1043628	1061164:1061180
1043612:1043628	attL	GAGGAACTGGCGCGGCG	NA	NA	NA	NA
WP_015457739.1|1047135_1048584_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A2L0V119	Agrobacterium_phage	40.2	1.0e-80
WP_015457740.1|1048580_1048820_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_144062106.1|1048834_1049197_-	thermonuclease family protein	NA	NA	NA	NA	NA
WP_015457742.1|1049390_1049744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457743.1|1049736_1049922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457744.1|1049921_1050485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457745.1|1050484_1050739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144061989.1|1050693_1051089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457746.1|1051085_1051676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457747.1|1051672_1052824_-	DNA cytosine methyltransferase	NA	A0A218M957	Mycobacterium_phage	34.9	1.6e-20
WP_144061990.1|1052823_1053177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457749.1|1053173_1053650_-	hypothetical protein	NA	A0A2D1GMW7	Marinobacter_phage	52.5	1.3e-32
WP_187294030.1|1053643_1053784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144061991.1|1053780_1054452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_187294031.1|1054448_1054625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457752.1|1054783_1054987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457753.1|1054986_1055175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457754.1|1055171_1056080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144061992.1|1056231_1057062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_187294032.1|1057044_1057767_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015457757.1|1057785_1058040_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015457758.1|1058174_1058456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015457759.1|1058457_1058649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015457760.1|1058877_1059384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144061993.1|1059432_1060062_+	DNA methyltransferase	NA	M4SPS7	Rhodobacter_phage	47.2	5.7e-44
WP_015457762.1|1060061_1060757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015457763.1|1060786_1061023_+	DUF2312 domain-containing protein	NA	B0VK10	Azospirillum_phage	56.2	2.5e-16
WP_041864799.1|1061025_1061235_+	hypothetical protein	NA	NA	NA	NA	NA
1061164:1061180	attR	GAGGAACTGGCGCGGCG	NA	NA	NA	NA
WP_015457764.1|1061231_1061444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144061994.1|1061440_1062184_+	hypothetical protein	NA	M9Q2G6	Clostridium_phage	36.2	2.0e-11
WP_041864800.1|1062146_1062716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041864801.1|1062763_1063375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015457768.1|1063682_1063964_-	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	54.9	8.8e-21
WP_015457769.1|1063966_1064263_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	54.2	9.9e-23
WP_015457770.1|1064446_1064650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041864802.1|1064753_1065074_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_015457772.1|1065189_1065609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084673621.1|1065550_1067446_+|terminase	terminase large subunit	terminase	A0A0U4B0M7	Pseudomonas_phage	36.9	6.3e-94
WP_015457774.1|1067442_1068708_+|portal	phage portal protein	portal	B4UTP1	Rhizobium_phage	59.1	3.9e-124
WP_015457775.1|1068664_1069261_+|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	53.0	1.2e-43
WP_015457776.1|1069350_1070640_+|capsid	phage major capsid protein	capsid	B4UTP3	Rhizobium_phage	61.7	1.6e-138
WP_144061995.1|1070706_1070898_+	hypothetical protein	NA	B4UTP6	Rhizobium_phage	55.9	1.7e-07
WP_015457778.1|1070904_1071528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015457779.1|1071531_1072128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015457780.1|1072124_1072457_+|head	phage head closure protein	head	NA	NA	NA	NA
>prophage 3
NC_020561	Sphingomonas sp. MM-1, complete sequence	4054833	1874484	1924690	4054833	head,portal,capsid,tail,protease,terminase	Pseudomonas_phage(18.18%)	48	NA	NA
WP_015458541.1|1874484_1874805_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	47.4	4.5e-13
WP_187294056.1|1875067_1875595_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_015458543.1|1875730_1877035_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_015458544.1|1877182_1877464_+	DUF3297 family protein	NA	NA	NA	NA	NA
WP_015458545.1|1877633_1878176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015458546.1|1878262_1879588_-	MFS transporter	NA	NA	NA	NA	NA
WP_041864857.1|1879837_1881010_+	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_015458548.1|1881045_1883049_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_015458549.1|1883053_1883686_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_015458550.1|1883682_1884078_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_107394679.1|1884155_1884860_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_015458552.1|1884856_1886194_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_015458553.1|1886190_1886727_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015458554.1|1886896_1888819_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_015458555.1|1888815_1889241_+	DUF2141 domain-containing protein	NA	NA	NA	NA	NA
WP_015458556.1|1889273_1891865_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_015458557.1|1891855_1892449_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015458558.1|1892626_1893586_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_015458559.1|1893591_1894743_+	adenosyl-hopene transferase HpnH	NA	NA	NA	NA	NA
WP_144062128.1|1894771_1896109_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_015458561.1|1896108_1896744_-	hopanoid-associated phosphorylase	NA	NA	NA	NA	NA
WP_015458562.1|1896740_1898720_-	squalene--hopene cyclase	NA	NA	NA	NA	NA
WP_015458563.1|1898706_1899969_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015458564.1|1899976_1900810_-	presqualene diphosphate synthase HpnD	NA	NA	NA	NA	NA
WP_051128721.1|1900806_1901685_-	squalene synthase HpnC	NA	NA	NA	NA	NA
WP_015458566.1|1901681_1902818_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_015458567.1|1902814_1903819_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2C9DTC1	Eastern_grey_kangaroopox_virus	27.0	2.4e-07
WP_144062129.1|1903906_1905004_+	bacteriohopanetetrol glucosamine biosynthesis glycosyltransferase HpnI	NA	NA	NA	NA	NA
WP_041864858.1|1905003_1906428_+	hopanoid biosynthesis associated radical SAM protein HpnJ	NA	NA	NA	NA	NA
WP_084653392.1|1906442_1907417_+	hopanoid biosynthesis-associated protein HpnK	NA	NA	NA	NA	NA
WP_015458571.1|1907416_1908292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051128819.1|1908315_1909272_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_015458573.1|1909284_1911108_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.3	1.0e-21
WP_041865292.1|1911296_1912046_+	protein involved in formation of curli polymers	NA	NA	NA	NA	NA
WP_015458575.1|1912088_1913099_-	inorganic phosphate transporter	NA	E5ESL8	Bathycoccus_sp._RCC1105_virus	30.4	2.6e-14
WP_041864859.1|1913117_1914230_-	DUF47 family protein	NA	S5VM37	Pseudomonas_phage	37.8	2.1e-12
WP_015458577.1|1914370_1915678_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015458578.1|1916070_1916808_+	helix-turn-helix domain-containing protein	NA	A0A1B0YZZ0	Pseudomonas_phage	46.0	1.4e-12
WP_015458580.1|1917506_1917902_+	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	38.8	3.3e-05
WP_144062130.1|1917987_1919487_+|terminase	terminase large subunit	terminase	B4UTP0	Rhizobium_phage	37.7	6.5e-78
WP_015458582.1|1919483_1919708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084673637.1|1919700_1920009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015458584.1|1920285_1920699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015458585.1|1920789_1921290_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015458586.1|1921450_1922674_+|capsid	phage major capsid protein	capsid	D6PFE3	uncultured_phage	31.9	2.6e-32
WP_144062131.1|1922691_1923216_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2K9VGN9	Pontimonas_phage	52.2	5.1e-30
WP_015458588.1|1923206_1924364_+|portal	phage portal protein	portal	Q6JIM9	Burkholderia_virus	35.3	7.8e-47
WP_015458589.1|1924363_1924690_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
>prophage 4
NC_020561	Sphingomonas sp. MM-1, complete sequence	4054833	2554304	2607859	4054833	transposase,integrase	Lactococcus_phage(23.08%)	50	2600640:2600657	2605969:2605986
WP_015449228.1|2554304_2555822_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	26.2	4.8e-12
WP_015449229.1|2555808_2556537_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	39.3	5.6e-35
WP_015459149.1|2556664_2557237_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_015459150.1|2557236_2557803_-	DUF3780 domain-containing protein	NA	A0A1P8DTE9	Proteus_phage	43.2	1.6e-29
WP_015459151.1|2557842_2560947_-	DUF499 domain-containing protein	NA	NA	NA	NA	NA
WP_015459152.1|2560962_2561238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144062144.1|2561395_2561971_+	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_015459154.1|2561970_2563512_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_015459155.1|2563532_2564417_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_015459156.1|2564456_2564936_-	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_015449228.1|2565059_2566577_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	26.2	4.8e-12
WP_015449229.1|2566563_2567292_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	39.3	5.6e-35
WP_187293999.1|2567426_2569658_-	DNA helicase UvrD	NA	NA	NA	NA	NA
WP_015459158.1|2569851_2570052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015459159.1|2570279_2571143_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_041864900.1|2571154_2572594_-	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
WP_015459161.1|2572712_2573936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015459162.1|2574486_2575359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041864902.1|2575466_2575556_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_015459163.1|2575569_2577273_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_015459164.1|2577287_2579339_+	potassium-transporting ATPase subunit KdpB	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	24.3	2.7e-26
WP_015459165.1|2579351_2579924_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_187294061.1|2579929_2582590_+	sensor histidine kinase KdpD	NA	W8CYF6	Bacillus_phage	24.8	4.0e-14
WP_015459167.1|2582594_2583275_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015459168.1|2583646_2583946_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_144062145.1|2584301_2584907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459170.1|2585018_2585900_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA	NA
WP_144062146.1|2585994_2586762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459172.1|2586764_2587544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041864904.1|2587540_2588197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459174.1|2588327_2588702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459175.1|2588715_2589663_+	hypothetical protein	NA	S5VKI3	Leptospira_phage	35.6	2.8e-42
WP_015459176.1|2589659_2590517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459177.1|2591008_2592196_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
WP_015459178.1|2592455_2592737_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_041864905.1|2592723_2593110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459180.1|2593102_2595502_+	bifunctional DNA primase/polymerase	NA	NA	NA	NA	NA
WP_015459181.1|2595876_2596359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459182.1|2596377_2597733_+	Terminase-like family protein	NA	A0A0S0N2B2	Pseudomonas_phage	27.8	2.2e-32
WP_051128732.1|2597748_2598576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459184.1|2598572_2598773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015459185.1|2599043_2599286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144061970.1|2599424_2600185_-|transposase	IS5 family transposase	transposase	A0A1V0SLQ8	Klosneuvirus	25.1	1.2e-08
WP_015459186.1|2600451_2600679_+	hypothetical protein	NA	NA	NA	NA	NA
2600640:2600657	attL	GCCGGGGCGCGGGGGCGT	NA	NA	NA	NA
WP_144062041.1|2601255_2602305_+	Reverse transcriptase	NA	NA	NA	NA	NA
WP_015459188.1|2602557_2603832_+|integrase	site-specific integrase	integrase	K7PGY1	Enterobacteria_phage	20.4	2.4e-09
WP_172595472.1|2603819_2603975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144062042.1|2604041_2604611_-	transglycosylase SLT domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	48.5	1.3e-23
WP_015459191.1|2605629_2606358_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	38.0	3.4e-32
2605969:2605986	attR	ACGCCCCCGCGCCCCGGC	NA	NA	NA	NA
WP_015460387.1|2606344_2607859_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_020561	Sphingomonas sp. MM-1, complete sequence	4054833	3093961	3134667	4054833	integrase	Ralstonia_phage(12.5%)	35	3084562:3084577	3140470:3140485
3084562:3084577	attL	CGACGAGGATGCCGGC	NA	NA	NA	NA
WP_015459632.1|3093961_3095158_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	38.4	4.3e-64
WP_015459633.1|3095186_3095861_-	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	42.8	3.7e-25
WP_144062158.1|3096074_3096881_+	toprim domain-containing protein	NA	A0A0H5AWB1	Pseudomonas_phage	32.5	6.7e-13
WP_015459635.1|3096953_3099167_+	strawberry notch family protein	NA	NA	NA	NA	NA
WP_009823939.1|3099211_3100216_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_009823940.1|3100212_3101568_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015449381.1|3101564_3102797_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJ76	Virus_Rctr85	26.8	3.5e-05
WP_144062159.1|3103170_3105021_+	strawberry notch C-terminal domain-containing protein	NA	A0A076FMQ0	Aureococcus_anophage	31.2	6.2e-14
WP_144062160.1|3105090_3105573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144062062.1|3105588_3106287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051128846.1|3106387_3106813_-	SOS response-associated peptidase family protein	NA	NA	NA	NA	NA
WP_015459640.1|3106968_3107589_+	SOS response-associated peptidase	NA	NA	NA	NA	NA
WP_015459641.1|3107591_3110921_-	error-prone DNA polymerase	NA	Q8W6C3	Saccharomonospora_phage	26.6	3.9e-83
WP_015459642.1|3110917_3112459_-	DNA polymerase Y family protein	NA	NA	NA	NA	NA
WP_015459643.1|3112379_3113111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015459644.1|3113235_3114159_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_041864946.1|3114162_3114531_-	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA	NA
WP_015459646.1|3114685_3115480_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
WP_041865451.1|3115579_3116113_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_015459648.1|3116135_3116624_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
WP_015459649.1|3116658_3117834_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_015459650.1|3117830_3119912_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_144062063.1|3119987_3120275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015459652.1|3120271_3120625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015459653.1|3120736_3121138_+	MerR family DNA-binding protein	NA	NA	NA	NA	NA
WP_015459654.1|3121203_3123576_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.8	5.1e-69
WP_015459655.1|3123851_3124205_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015459656.1|3124201_3124672_+	VOC family protein	NA	NA	NA	NA	NA
WP_015459657.1|3124668_3125076_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	64.3	4.5e-42
WP_015459658.1|3125068_3126142_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_015459659.1|3126258_3128259_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_015459660.1|3128413_3129163_+	DUF1738 domain-containing protein	NA	NA	NA	NA	NA
WP_015449377.1|3129320_3130670_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_037465845.1|3130666_3132457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015449375.1|3132453_3134667_+|integrase	phage integrase	integrase	NA	NA	NA	NA
3140470:3140485	attR	CGACGAGGATGCCGGC	NA	NA	NA	NA
>prophage 6
NC_020561	Sphingomonas sp. MM-1, complete sequence	4054833	3621454	3628698	4054833	head,portal,capsid,tail,protease	Geobacillus_phage(25.0%)	13	NA	NA
WP_015460095.1|3621454_3622576_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	39.2	1.1e-48
WP_015460096.1|3622575_3622884_+	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	47.4	1.6e-07
WP_015460097.1|3622889_3623348_+|head,protease	HK97 family phage prohead protease	head,protease	I6S2W2	Marinomonas_phage	41.6	3.0e-18
WP_041865533.1|3623362_3624508_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	50.8	1.0e-78
WP_015460099.1|3624588_3624855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170112669.1|3624869_3625016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015460100.1|3625019_3626471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041865534.1|3626482_3626761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015460102.1|3626760_3627297_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_015460103.1|3627293_3627626_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_015460104.1|3627622_3627841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015460105.1|3627837_3628218_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_015460106.1|3628290_3628698_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
>prophage 1
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	0	6641	275840		Pseudomonas_phage(33.33%)	4	NA	NA
WP_015449216.1|2233_3100_-	toprim domain-containing protein	NA	A0A0H5AWB1	Pseudomonas_phage	32.3	1.8e-08
WP_015449217.1|3162_3489_-	single-stranded DNA-binding protein	NA	K7ZMK1	Xanthomonas_citri_phage	31.1	1.4e-06
WP_041865596.1|4155_5244_+	replication initiation protein	NA	NA	NA	NA	NA
WP_015449219.1|5438_6641_+	AAA family ATPase	NA	A0A1I9KF58	Aeromonas_phage	31.7	6.6e-41
>prophage 2
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	12205	18440	275840	integrase,transposase	Burkholderia_phage(20.0%)	5	6711:6726	27718:27733
6711:6726	attL	TCGCGGCTGATCTGGT	NA	NA	NA	NA
WP_009824028.1|12205_13084_-	AAA family ATPase	NA	B5TA81	Burkholderia_phage	25.4	1.0e-06
WP_015449225.1|13010_14411_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	L7P850	Pseudomonas_phage	29.3	2.1e-17
WP_015449226.1|14602_15175_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	47.6	6.2e-37
WP_015449228.1|16207_17725_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	26.2	4.8e-12
WP_015449229.1|17711_18440_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	39.3	5.6e-35
27718:27733	attR	ACCAGATCAGCCGCGA	NA	NA	NA	NA
>prophage 3
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	31125	40571	275840	transposase	Salmonella_phage(50.0%)	7	NA	NA
WP_004212886.1|31125_33627_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	41.0	7.7e-124
WP_004213255.1|34086_34647_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	79.3	4.6e-45
WP_014072603.1|34817_35240_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014072602.1|35316_35712_+	mercury transporter MerT	NA	NA	NA	NA	NA
WP_004213249.1|35724_36054_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_004213247.1|36091_37510_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.7	2.4e-42
WP_015449233.1|37601_40571_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	39.9	7.0e-209
>prophage 4
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	43987	54331	275840	transposase	Ochrobactrum_phage(20.0%)	12	NA	NA
WP_015449237.1|43987_44542_-	AAA family ATPase	NA	A0A219VHB7	Ochrobactrum_phage	58.4	2.4e-22
WP_015449238.1|44534_44753_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_015449239.1|44790_45096_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_015449240.1|45269_48428_+	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	26.9	9.0e-13
WP_015449241.1|48440_49157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144062182.1|49232_49613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084673707.1|49639_50422_-	Fic family protein	NA	NA	NA	NA	NA
WP_144062183.1|50423_51104_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	42.6	2.1e-31
WP_015449243.1|51194_52283_+|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	26.1	4.1e-13
WP_144062184.1|52371_53148_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_015449414.1|53283_53529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013039114.1|53737_54331_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	56.6	2.2e-45
>prophage 5
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	60030	62388	275840		uncultured_virus(100.0%)	1	NA	NA
WP_015449247.1|60030_62388_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.9	6.8e-74
>prophage 6
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	68812	70880	275840		Klosneuvirus(50.0%)	2	NA	NA
WP_015449253.1|68812_69286_+	DUF305 domain-containing protein	NA	A0A1V0SJW0	Klosneuvirus	34.3	1.4e-05
WP_015449254.1|69344_70880_+	PAS domain S-box protein	NA	A0A1V0S925	Catovirus	34.7	7.0e-11
>prophage 7
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	75163	77866	275840		Acinetobacter_phage(100.0%)	1	NA	NA
WP_015449259.1|75163_77866_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.4	1.8e-33
>prophage 8
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	84652	85678	275840		Tupanvirus(100.0%)	1	NA	NA
WP_004212676.1|84652_85678_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	28.9	1.3e-32
>prophage 9
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	93081	94992	275840		Synechococcus_phage(100.0%)	1	NA	NA
WP_015449268.1|93081_94992_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	I3ULH6	Synechococcus_phage	45.7	2.6e-07
>prophage 10
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	98454	102890	275840	transposase	Salmonella_phage(50.0%)	3	NA	NA
WP_003100881.1|98454_101421_-|transposase	Tn3-like element ISPa38 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.2	0.0e+00
WP_001247892.1|101579_101870_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_041865600.1|102125_102890_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.2	2.1e-85
>prophage 11
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	108000	108594	275840		Salmonella_phage(100.0%)	1	NA	NA
WP_013039114.1|108000_108594_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	56.6	2.2e-45
>prophage 12
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	116832	117813	275840		Pandoravirus(100.0%)	1	NA	NA
WP_007687842.1|116832_117813_-	MBL fold metallo-hydrolase	NA	S4VYV9	Pandoravirus	28.0	1.1e-12
>prophage 13
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	123113	125490	275840		Synechococcus_phage(50.0%)	2	NA	NA
WP_007687828.1|123113_124214_+	NAD(P)-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.7	2.7e-25
WP_007687826.1|124257_125490_+	cytochrome P450	NA	A0A2I2L575	Orpheovirus	24.2	4.2e-06
>prophage 14
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	136929	142602	275840		Acanthamoeba_polyphaga_mimivirus(25.0%)	5	NA	NA
WP_015449279.1|136929_137919_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	28.1	1.4e-20
WP_015449280.1|137915_138653_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.5	4.5e-08
WP_015449281.1|138649_140629_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015449282.1|140693_141803_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A0K0KVL7	Prochlorococcus_phage	29.7	3.2e-29
WP_015449283.1|141852_142602_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.8	1.6e-13
>prophage 15
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	156747	160427	275840	transposase	Salmonella_phage(50.0%)	2	NA	NA
WP_015449292.1|156747_159717_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	39.7	4.3e-198
WP_011607925.1|159857_160427_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	45.0	1.2e-32
>prophage 16
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	171179	182075	275840	transposase	Enterobacteria_phage(25.0%)	6	NA	NA
WP_015449303.1|171179_174185_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	46.9	4.5e-256
WP_015449304.1|174194_174812_-	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	52.7	1.5e-44
WP_144062188.1|176553_177916_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	28.1	1.3e-08
WP_015449309.1|178203_179988_-	chloride channel protein	NA	NA	NA	NA	NA
WP_015449310.1|180082_180478_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015449312.1|180902_182075_+	cystathionine gamma-synthase	NA	A0A0B5JD48	Pandoravirus	33.4	3.8e-25
>prophage 17
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	187487	189720	275840	transposase	Escherichia_phage(50.0%)	2	NA	NA
WP_015449228.1|187487_189005_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	26.2	4.8e-12
WP_015449229.1|188991_189720_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	39.3	5.6e-35
>prophage 18
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	198629	202626	275840		uncultured_virus(50.0%)	3	NA	NA
WP_015449327.1|198629_200891_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	29.6	8.0e-72
WP_004212718.1|200887_201097_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_015449328.1|201453_202626_+	cystathionine gamma-synthase	NA	A0A0B5JD48	Pandoravirus	33.2	2.1e-23
>prophage 19
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	223805	227105	275840		Beihai_Nido-like_virus(100.0%)	1	NA	NA
WP_015449351.1|223805_227105_+	TM0106 family RecB-like putative nuclease	NA	A0A1L3KIW1	Beihai_Nido-like_virus	27.0	1.3e-06
>prophage 20
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	231013	238926	275840		uncultured_Mediterranean_phage(100.0%)	2	NA	NA
WP_015449354.1|231013_236128_+	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	22.1	6.1e-51
WP_015449355.1|236124_238926_+	DEAD/DEAH box helicase	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	25.9	8.0e-29
>prophage 21
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	243832	245540	275840		Salmonella_phage(50.0%)	2	NA	NA
WP_015449358.1|243832_245095_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	38.5	1.2e-72
WP_015449359.1|245102_245540_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	42.2	5.6e-14
>prophage 22
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	250032	251121	275840	transposase	Burkholderia_phage(100.0%)	1	NA	NA
WP_015449243.1|250032_251121_-|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	26.1	4.1e-13
>prophage 23
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	255007	258870	275840		Leptospira_phage(33.33%)	3	NA	NA
WP_015449366.1|255007_255940_-	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	33.5	2.9e-12
WP_021245272.1|256324_256717_-	DUF3768 domain-containing protein	NA	L7TKV8	Rhizobium_phage	42.2	2.9e-14
WP_015449370.1|257685_258870_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	57.3	6.2e-100
>prophage 24
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	261877	262780	275840		Caulobacter_phage(100.0%)	1	NA	NA
WP_015449374.1|261877_262780_-	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	36.8	1.9e-40
>prophage 25
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	268333	269080	275840		Caulobacter_phage(100.0%)	1	NA	NA
WP_015449378.1|268333_269080_-	DUF1738 domain-containing protein	NA	A0A1V0EBY3	Caulobacter_phage	42.0	3.3e-38
>prophage 26
NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	275840	272135	275721	275840	integrase	Thermus_phage(50.0%)	3	NA	NA
WP_009823939.1|272135_273140_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	26.9	6.2e-08
WP_009823940.1|273136_274492_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015449381.1|274488_275721_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	22.2	1.6e-05
>prophage 1
NC_020563	Sphingomonas sp. MM-1 plasmid pISP4, complete sequence	33183	12403	23488	33183	transposase	Escherichia_phage(28.57%)	12	NA	NA
WP_001389365.1|12403_13168_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_007682039.1|13742_14504_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	28.2	8.8e-15
WP_081440685.1|14549_15218_+	EthD domain-containing protein	NA	NA	NA	NA	NA
WP_145907151.1|15162_15456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007682041.1|15638_16313_+|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	31.9	4.3e-05
WP_007682049.1|16774_17107_-	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_007682056.1|17087_17396_-	BrnT family toxin	NA	NA	NA	NA	NA
WP_029987071.1|17427_17988_-	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	51.2	3.0e-36
WP_001389365.1|18032_18797_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_015460628.1|18956_19847_-	haloalkane dehalogenase	NA	B9U1C3	Vaccinia_virus	43.4	2.9e-57
WP_007682112.1|19932_20187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007683471.1|20557_23488_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	35.1	1.7e-151
