assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000347595.1_ASM34759v1	NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	1	843484-844575	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	 or Type II-C?,Type II-B, Type II-B,Type II-A,Type II-C	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	36,36,36	2	2	843718-843747|844510-844539	NC_020515.1_1395502-1395473|NC_020515.1_2057273-2057302	NA:NA:NA	13,16,16	16	orTypeII-C?,TypeII-B,TypeII-B,TypeII-A,TypeII-C	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	NA,NA|1332aa|down_9|NC_020515.1_856293_860289_+	NA|185aa|up_9|NC_020515.1_835844_836399_+	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component	NA|333aa|up_8|NC_020515.1_836427_837426_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|122aa|up_7|NC_020515.1_837435_837801_+	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|260aa|up_6|NC_020515.1_837814_838594_+	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|119aa|up_5|NC_020515.1_838642_838999_+	PRK10234, PRK10234, transcriptional regulator GutM	NA|215aa|up_4|NC_020515.1_839060_839705_+	PRK10826, PRK10826, hexitol phosphatase HxpB	NA|254aa|up_3|NC_020515.1_839731_840493_+	PRK10434, srlR, DNA-binding transcriptional repressor	NA|189aa|up_2|NC_020515.1_840535_841102_-	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|291aa|up_1|NC_020515.1_841101_841974_-	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|467aa|up_0|NC_020515.1_842071_843472_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	cas2|109aa|down_0|NC_020515.1_844833_845160_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_1|NC_020515.1_845152_846067_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1046aa|down_2|NC_020515.1_846119_849257_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|196aa|down_3|NC_020515.1_849446_850034_-	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|552aa|down_4|NC_020515.1_850159_851815_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|319aa|down_5|NC_020515.1_851947_852904_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|242aa|down_6|NC_020515.1_853076_853802_+	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|366aa|down_7|NC_020515.1_853803_854901_+	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|406aa|down_8|NC_020515.1_855079_856297_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|1332aa|down_9|NC_020515.1_856293_860289_+	NA
GCF_000347595.1_ASM34759v1	NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	2	950110-950541	2,2,2	CRT,PILER-CR,CRISPRCasFinder	no		csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	Orphan	GTTTCAACTCTCAGCCACCTACAGGTAGCTGC,GTTTCAACTCTCAGCCACCTACAGGTAGCTGC,GTTTCAACTCTCAGCCACCTACAGGTAGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	6,5,5	6	Orphan	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	NA|155aa|up_2|NC_020515.1_947243_947708_+,NA	NA|207aa|up_9|NC_020515.1_941589_942210_+	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]	NA|410aa|up_8|NC_020515.1_942225_943455_+	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional	NA|253aa|up_7|NC_020515.1_943474_944233_+	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|472aa|up_6|NC_020515.1_944516_945932_-	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA|103aa|up_5|NC_020515.1_945983_946292_+	pfam04287, DUF446, tRNA pseudouridine synthase C	NA|243aa|up_4|NC_020515.1_946341_947070_+	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional	NA|52aa|up_3|NC_020515.1_947087_947243_+	PRK05114, PRK05114, YoaH family protein	NA|155aa|up_2|NC_020515.1_947243_947708_+	NA	NA|280aa|up_1|NC_020515.1_947759_948599_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|469aa|up_0|NC_020515.1_948686_950093_+	pfam04317, DUF463, YcjX-like family, DUF463	NA|375aa|down_0|NC_020515.1_950876_952001_-	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|308aa|down_1|NC_020515.1_952124_953048_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|146aa|down_2|NC_020515.1_953084_953522_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|151aa|down_3|NC_020515.1_957816_958269_-	pfam04284, DUF441, Protein of unknown function (DUF441)	NA|90aa|down_4|NC_020515.1_958329_958599_-	pfam07798, DUF1640, Protein of unknown function (DUF1640)	NA|192aa|down_5|NC_020515.1_958695_959271_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|589aa|down_6|NC_020515.1_959431_961198_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|305aa|down_7|NC_020515.1_961312_962227_+	PRK00971, PRK00971, glutaminase; Provisional	NA|96aa|down_8|NC_020515.1_962278_962566_-	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA	NA|314aa|down_9|NC_020515.1_962742_963684_+	PRK06860, PRK06860, lipid A biosynthesis lauroyl acyltransferase; Provisional
GCF_000347595.1_ASM34759v1	NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	3	956232-956348	3	CRISPRCasFinder	no		csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	Orphan	AGTGCCATCATTAGAATGGTTTTCCCCCCCCCCT	34	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	NA|155aa|up_5|NC_020515.1_947243_947708_+,NA	NA|472aa|up_9|NC_020515.1_944516_945932_-	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA|103aa|up_8|NC_020515.1_945983_946292_+	pfam04287, DUF446, tRNA pseudouridine synthase C	NA|243aa|up_7|NC_020515.1_946341_947070_+	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional	NA|52aa|up_6|NC_020515.1_947087_947243_+	PRK05114, PRK05114, YoaH family protein	NA|155aa|up_5|NC_020515.1_947243_947708_+	NA	NA|280aa|up_4|NC_020515.1_947759_948599_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|469aa|up_3|NC_020515.1_948686_950093_+	pfam04317, DUF463, YcjX-like family, DUF463	NA|375aa|up_2|NC_020515.1_950876_952001_-	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|308aa|up_1|NC_020515.1_952124_953048_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|146aa|up_0|NC_020515.1_953084_953522_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|151aa|down_0|NC_020515.1_957816_958269_-	pfam04284, DUF441, Protein of unknown function (DUF441)	NA|90aa|down_1|NC_020515.1_958329_958599_-	pfam07798, DUF1640, Protein of unknown function (DUF1640)	NA|192aa|down_2|NC_020515.1_958695_959271_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|589aa|down_3|NC_020515.1_959431_961198_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|305aa|down_4|NC_020515.1_961312_962227_+	PRK00971, PRK00971, glutaminase; Provisional	NA|96aa|down_5|NC_020515.1_962278_962566_-	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA	NA|314aa|down_6|NC_020515.1_962742_963684_+	PRK06860, PRK06860, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|199aa|down_7|NC_020515.1_963771_964368_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|106aa|down_8|NC_020515.1_964378_964696_+	pfam01906, YbjQ_1, Putative heavy-metal-binding	NA|155aa|down_9|NC_020515.1_964695_965160_+	PRK05170, PRK05170, YcgN family cysteine cluster protein
GCF_000347595.1_ASM34759v1	NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	4	1552928-1554892	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	Type I-C,Type I-U, Type I-U?	GTTTCAACTCACAGCTACGCGTACGTAGCTGG,CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC,CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC	32,32,32	1	1	1553893-1553926	NC_020515.1_1146994-1147027	NA:NA:NA	28,29,29	29	TypeI-C,TypeI-U,TypeI-U?	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	NA|385aa|up_9|NC_020515.1_1538619_1539774_+,NA|204aa|up_5|NC_020515.1_1544111_1544723_+,NA	NA|385aa|up_9|NC_020515.1_1538619_1539774_+	NA	NA|385aa|up_8|NC_020515.1_1540020_1541175_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|305aa|up_7|NC_020515.1_1541454_1542369_+	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|470aa|up_6|NC_020515.1_1542381_1543791_+	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|204aa|up_5|NC_020515.1_1544111_1544723_+	NA	NA|397aa|up_4|NC_020515.1_1544796_1545987_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|307aa|up_3|NC_020515.1_1546069_1546990_-	PRK10073, PRK10073, putative glycosyl transferase; Provisional	NA|737aa|up_2|NC_020515.1_1546998_1549209_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|438aa|up_1|NC_020515.1_1549507_1550821_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|506aa|up_0|NC_020515.1_1551140_1552658_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	cas3|821aa|down_0|NC_020515.1_1555072_1557535_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|down_1|NC_020515.1_1557546_1558287_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|664aa|down_2|NC_020515.1_1558283_1560275_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|281aa|down_3|NC_020515.1_1560304_1561147_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|221aa|down_4|NC_020515.1_1561147_1561810_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|338aa|down_5|NC_020515.1_1562357_1563371_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|down_6|NC_020515.1_1563415_1563709_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|476aa|down_7|NC_020515.1_1565309_1566737_+	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA|314aa|down_8|NC_020515.1_1566798_1567740_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|289aa|down_9|NC_020515.1_1567839_1568706_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_000347595.1_ASM34759v1	NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	5	1563910-1565142	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	Type I-C,Type I-U, Type I-U?	GTTTCAACTCACAGCCACCCGAAGGTGGCTGC,GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC,GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	18,18,18	18	TypeI-C,TypeI-U,TypeI-U?	csa3,cas14j,DEDDh,cas3,cas2,cas1,cas9,cas5,cas8c,cas7,cas4,DinG	NA,NA|130aa|down_6|NC_020515.1_1572023_1572413_-	NA|737aa|up_9|NC_020515.1_1546998_1549209_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|438aa|up_8|NC_020515.1_1549507_1550821_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|506aa|up_7|NC_020515.1_1551140_1552658_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	cas3|821aa|up_6|NC_020515.1_1555072_1557535_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|up_5|NC_020515.1_1557546_1558287_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|664aa|up_4|NC_020515.1_1558283_1560275_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|281aa|up_3|NC_020515.1_1560304_1561147_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|221aa|up_2|NC_020515.1_1561147_1561810_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|338aa|up_1|NC_020515.1_1562357_1563371_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NC_020515.1_1563415_1563709_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|476aa|down_0|NC_020515.1_1565309_1566737_+	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA|314aa|down_1|NC_020515.1_1566798_1567740_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|289aa|down_2|NC_020515.1_1567839_1568706_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|562aa|down_3|NC_020515.1_1568797_1570483_-	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD	NA|142aa|down_4|NC_020515.1_1570492_1570918_-	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|320aa|down_5|NC_020515.1_1570929_1571889_-	PRK09455, rseB, anti-sigma E factor; Provisional	NA|130aa|down_6|NC_020515.1_1572023_1572413_-	NA	NA|968aa|down_7|NC_020515.1_1572416_1575320_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|99aa|down_8|NC_020515.1_1575366_1575663_-	PRK11370, PRK11370, YciI family protein	NA|149aa|down_9|NC_020515.1_1575683_1576130_-	PRK10694, PRK10694, acyl-CoA thioester hydrolase YciA
