assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000344805.1_ASM34480v1	NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	1	347173-347318	1	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,WYL,PD-DExK	Orphan	CGCGTCGATCCGCGTACCGGCAA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,RT,csa3,WYL,PD-DExK	NA|117aa|up_8|NC_020453.1_337185_337536_+,NA	NA|181aa|up_9|NC_020453.1_336553_337096_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|117aa|up_8|NC_020453.1_337185_337536_+	NA	NA|96aa|up_7|NC_020453.1_337996_338284_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|277aa|up_6|NC_020453.1_338295_339126_+	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein	NA|225aa|up_5|NC_020453.1_339126_339801_-	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	NA|307aa|up_4|NC_020453.1_339863_340784_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|156aa|up_3|NC_020453.1_340988_341456_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|487aa|up_2|NC_020453.1_341765_343226_-	pfam00656, Peptidase_C14, Caspase domain	NA|435aa|up_1|NC_020453.1_343337_344642_-	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	NA|449aa|up_0|NC_020453.1_344750_346097_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|194aa|down_0|NC_020453.1_347891_348473_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|308aa|down_1|NC_020453.1_348752_349676_-	PRK12921, PRK12921, oxidoreductase	NA|246aa|down_2|NC_020453.1_349783_350521_-	cd05373, SDR_c10, classical (c) SDR, subgroup  10	NA|203aa|down_3|NC_020453.1_350576_351185_-	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|451aa|down_4|NC_020453.1_351285_352638_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|191aa|down_5|NC_020453.1_352743_353316_-	pfam09998, DUF2239, Uncharacterized protein conserved in bacteria (DUF2239)	NA|222aa|down_6|NC_020453.1_353556_354222_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|469aa|down_7|NC_020453.1_354225_355632_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|568aa|down_8|NC_020453.1_355799_357503_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|464aa|down_9|NC_020453.1_357667_359059_+	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only]
GCF_000344805.1_ASM34480v1	NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	2	2545715-2545821	2	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,WYL,PD-DExK	Orphan	CCGTGAAGAACGGGGAGAGGGAGCGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,WYL,PD-DExK	NA,NA	NA|686aa|up_9|NC_020453.1_2535362_2537420_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|205aa|up_8|NC_020453.1_2537416_2538031_+	pfam00857, Isochorismatase, Isochorismatase family	NA|460aa|up_7|NC_020453.1_2538226_2539606_+	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|256aa|up_6|NC_020453.1_2539612_2540380_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|256aa|up_5|NC_020453.1_2540376_2541144_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|268aa|up_4|NC_020453.1_2541140_2541944_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|233aa|up_3|NC_020453.1_2541945_2542644_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|313aa|up_2|NC_020453.1_2542643_2543582_-	cd13652, PBP2_ThiY_THI5_like_1, Putative substrate binding domain of an ABC-type transporter similar to ThiY/THI5; the type 2 periplasmic binding protein fold	NA|330aa|up_1|NC_020453.1_2543680_2544670_+	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	NA|259aa|up_0|NC_020453.1_2544722_2545499_+	pfam04199, Cyclase, Putative cyclase	NA|265aa|down_0|NC_020453.1_2546641_2547436_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|491aa|down_1|NC_020453.1_2547998_2549471_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|313aa|down_2|NC_020453.1_2549479_2550418_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|228aa|down_3|NC_020453.1_2550416_2551100_+	pfam01527, HTH_Tnp_1, Transposase	NA|783aa|down_4|NC_020453.1_2551165_2553514_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|151aa|down_5|NC_020453.1_2553516_2553969_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|188aa|down_6|NC_020453.1_2554341_2554905_-	PRK05417, PRK05417, glutathione-dependent formaldehyde-activating enzyme; Provisional	NA|370aa|down_7|NC_020453.1_2554938_2556048_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|160aa|down_8|NC_020453.1_2556126_2556606_-	TIGR03874, 4cys_cytochr, c-type cytochrome, methanol metabolism-related	NA|601aa|down_9|NC_020453.1_2556738_2558541_-	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF)
GCF_000344805.1_ASM34480v1	NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	3	6405893-6406134	3	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,WYL,PD-DExK	Orphan	AGCGTGCCGTCATTGTCCGGATC	23	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,RT,csa3,WYL,PD-DExK	NA|195aa|up_9|NC_020453.1_6391370_6391955_+,NA|124aa|up_3|NC_020453.1_6398036_6398408_-,NA|148aa|down_0|NC_020453.1_6406427_6406871_-,NA|281aa|down_1|NC_020453.1_6407201_6408044_+,NA|114aa|down_2|NC_020453.1_6408096_6408438_+,NA|238aa|down_7|NC_020453.1_6411719_6412433_-	NA|195aa|up_9|NC_020453.1_6391370_6391955_+	NA	NA|317aa|up_8|NC_020453.1_6391996_6392947_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|328aa|up_7|NC_020453.1_6392943_6393927_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|495aa|up_6|NC_020453.1_6393931_6395416_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|341aa|up_5|NC_020453.1_6395455_6396478_-	cd19997, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate binding protein such as CUT2	NA|366aa|up_4|NC_020453.1_6396752_6397850_+	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|124aa|up_3|NC_020453.1_6398036_6398408_-	NA	NA|1027aa|up_2|NC_020453.1_6398953_6402034_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|793aa|up_1|NC_020453.1_6402430_6404809_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|212aa|up_0|NC_020453.1_6405120_6405756_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|148aa|down_0|NC_020453.1_6406427_6406871_-	NA	NA|281aa|down_1|NC_020453.1_6407201_6408044_+	NA	NA|114aa|down_2|NC_020453.1_6408096_6408438_+	NA	NA|301aa|down_3|NC_020453.1_6408457_6409360_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|142aa|down_4|NC_020453.1_6409356_6409782_-	PRK11267, PRK11267, biopolymer transport protein ExbD; Provisional	NA|259aa|down_5|NC_020453.1_6409785_6410562_-	TIGR02797, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB	NA|270aa|down_6|NC_020453.1_6410921_6411731_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|238aa|down_7|NC_020453.1_6411719_6412433_-	NA	NA|581aa|down_8|NC_020453.1_6412710_6414453_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|109aa|down_9|NC_020453.1_6414594_6414921_-	pfam09928, DUF2160, Predicted small integral membrane protein (DUF2160)
