The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	8264165	1891277	1945955	8264165	tail,portal,head,capsid,integrase,terminase,plate	Rhizobium_phage(10.0%)	60	1884266:1884280	1893765:1893779
1884266:1884280	attL	GCGTGCGCCAGCGCG	NA	NA	NA	NA
WP_015664766.1|1891277_1892459_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015664767.1|1892751_1892955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144058277.1|1892941_1893391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664769.1|1893428_1894583_-	DNA-directed DNA polymerase	NA	NA	NA	NA	NA
1893765:1893779	attR	CGCGCTGGCGCACGC	NA	NA	NA	NA
WP_144058278.1|1894682_1895366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144058490.1|1895724_1896021_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015664772.1|1896033_1896810_+	ATP-binding protein	NA	B4UTW5	Rhizobium_phage	39.6	8.3e-45
WP_015664773.1|1896851_1897478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664774.1|1897589_1898714_+	hypothetical protein	NA	B4UTX3	Rhizobium_phage	45.3	1.9e-74
WP_144058279.1|1898787_1898985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664776.1|1898984_1900928_+	DEAD/DEAH box helicase	NA	A0A2H4GY70	Pseudomonas_phage	41.3	2.7e-116
WP_015664777.1|1900940_1901207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144058280.1|1901340_1901544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664779.1|1901555_1904063_+	bifunctional DNA primase/polymerase	NA	NA	NA	NA	NA
WP_042338973.1|1904309_1906262_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_015664782.1|1906650_1907049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664783.1|1907251_1907734_-	transglycosylase SLT domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	39.0	5.6e-07
WP_015664784.1|1907745_1908093_-	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	57.8	2.3e-31
WP_015664785.1|1908089_1908317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664786.1|1908319_1908559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664787.1|1908570_1908981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144058281.1|1909436_1910291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664789.1|1910313_1911300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144058282.1|1911377_1911812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664791.1|1911811_1912462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042338979.1|1912687_1913599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664793.1|1914911_1915178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664795.1|1915696_1916257_-	antirestriction protein ArdA	NA	G9FHQ1	Rhodococcus_virus	33.3	9.4e-14
WP_015664796.1|1916273_1916507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664797.1|1916510_1917206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664798.1|1917962_1918562_+	deoxynucleotide monophosphate kinase	NA	A0A0K1LM89	Caulobacter_phage	37.3	3.7e-16
WP_015664799.1|1918565_1919138_+|terminase	terminase small subunit	terminase	NA	NA	NA	NA
WP_015664801.1|1919305_1921252_+|terminase	phage terminase large subunit family protein	terminase	A0A0C5ABH4	Bacteriophage	46.1	2.9e-139
WP_015664802.1|1921255_1921486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160167589.1|1921675_1922890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015664804.1|1923264_1923471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664805.1|1923470_1925090_+|portal	phage portal protein	portal	G8DH43	Emiliania_huxleyi_virus	38.9	6.1e-90
WP_015664806.1|1925086_1926382_+	S49 family peptidase	NA	A0A219YAK4	Aeromonas_phage	34.2	1.4e-41
WP_015664807.1|1926394_1926757_+|head	head decoration protein	head	NA	NA	NA	NA
WP_015664808.1|1926795_1927854_+|capsid	major capsid protein	capsid	A0A2D1GMR5	Marinobacter_phage	35.9	5.8e-49
WP_015664809.1|1927857_1928298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664810.1|1928297_1928648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664811.1|1928649_1929177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664812.1|1929178_1929889_+|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_015664813.1|1929943_1930357_+|plate	phage-related baseplate assembly protein	plate	A0A193GYY8	Enterobacter_phage	38.2	8.4e-12
WP_015664814.1|1930356_1931217_+|plate	baseplate J/gp47 family protein	plate	Q6K1H4	Salmonella_virus	30.6	9.9e-23
WP_015664815.1|1931216_1932062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664816.1|1932045_1932744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664817.1|1932743_1935962_+	DUF4815 domain-containing protein	NA	K4ICQ5	Acidithiobacillus_phage	35.0	5.9e-177
WP_015664818.1|1935966_1937082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664819.1|1937092_1937665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664820.1|1937755_1939165_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A193GYC3	Enterobacter_phage	49.0	3.5e-118
WP_015664821.1|1939176_1939680_+|tail	phage major tail tube protein	tail	A0A1B2LRS4	Wolbachia_phage	44.6	9.9e-39
WP_042340644.1|1939790_1940051_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_015664823.1|1940068_1940209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015664824.1|1940210_1942808_+|tail	phage tail tape measure protein	tail	D6PEW0	uncultured_phage	68.3	8.0e-07
WP_042338985.1|1942810_1943197_+|tail	phage tail protein	tail	D4HTW5	Vibrio_phage	52.8	5.2e-32
WP_015664826.1|1943196_1943406_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_144058491.1|1943474_1944500_+	hypothetical protein	NA	A0A1B2LRT8	Wolbachia_phage	30.8	2.0e-30
WP_042338987.1|1945040_1945955_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0T6G1	Thiobacimonas_phage	41.2	1.3e-33
>prophage 2
NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	8264165	2839231	2845477	8264165		Yellowstone_lake_phycodnavirus(50.0%)	7	NA	NA
WP_015665644.1|2839231_2840269_-	zinc-binding dehydrogenase	NA	E3SJ82	Synechococcus_phage	37.5	1.3e-56
WP_015665645.1|2840277_2841201_-	transketolase	NA	A0A0P0YNE1	Yellowstone_lake_phycodnavirus	31.0	2.0e-16
WP_015665646.1|2841197_2842046_-	transketolase	NA	A0A0P0YMZ3	Yellowstone_lake_phycodnavirus	36.1	6.0e-12
WP_015665647.1|2842091_2843090_-	GDP-mannose 4,6-dehydratase	NA	A0A0N7KVW3	Yellowstone_lake_phycodnavirus	36.2	1.8e-36
WP_172889750.1|2843102_2843735_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_015665648.1|2843707_2844646_-	SDR family oxidoreductase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	24.2	7.6e-08
WP_015665649.1|2844754_2845477_-	nucleotidyltransferase family protein	NA	A0A127AW70	Bacillus_phage	23.8	1.1e-09
>prophage 3
NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	8264165	4097800	4108408	8264165	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_015666696.1|4097800_4098829_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.0e-21
WP_015666697.1|4098825_4099665_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.3	8.2e-30
WP_015666698.1|4099684_4100761_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.5	2.2e-43
WP_006614346.1|4101040_4101274_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	55.4	4.2e-08
WP_015666699.1|4101383_4101911_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_015666700.1|4101907_4102732_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	51.2	1.0e-53
WP_015666701.1|4102861_4104193_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.1	3.1e-100
WP_015666702.1|4104296_4104653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015666703.1|4104751_4105519_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.9	8.3e-37
WP_042339753.1|4105532_4105916_-	response regulator	NA	NA	NA	NA	NA
WP_173424428.1|4106192_4106840_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.8	4.5e-28
WP_015666706.1|4106947_4108408_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	40.9	7.3e-18
>prophage 4
NC_020453	Bradyrhizobium oligotrophicum S58, complete genome	8264165	4355515	4422670	8264165	tail,protease,integrase,tRNA,holin	Klosneuvirus(16.67%)	57	4370147:4370163	4387123:4387139
WP_042339869.1|4355515_4356250_+|holin	phosphatidylcholine synthase	holin	NA	NA	NA	NA
WP_015666930.1|4356246_4356972_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.9	4.9e-39
WP_015666931.1|4357138_4358113_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_015666932.1|4358127_4358880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015666933.1|4359001_4359277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015666934.1|4359578_4360775_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-25
WP_015666935.1|4361182_4362310_+	DUF2336 domain-containing protein	NA	NA	NA	NA	NA
WP_015666936.1|4362322_4363648_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_015666937.1|4363761_4364352_+	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_015666938.1|4364348_4365503_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015666939.1|4365846_4367637_+	NirA family protein	NA	NA	NA	NA	NA
WP_015666940.1|4367633_4369247_+	sulfite reductase subunit alpha	NA	NA	NA	NA	NA
WP_015666941.1|4369407_4369560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015666942.1|4369525_4370335_-	LamB/YcsF family protein	NA	NA	NA	NA	NA
4370147:4370163	attL	CGCGCCGATGCTGACGC	NA	NA	NA	NA
WP_015666943.1|4370384_4371419_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_015666944.1|4371415_4372147_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_015666945.1|4372393_4373092_+	ribonuclease activity regulator RraA	NA	NA	NA	NA	NA
WP_015666946.1|4373143_4373551_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_015666947.1|4373619_4374531_-	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
WP_015666948.1|4374622_4375099_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_015666949.1|4375247_4376267_+	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA	NA
WP_015666951.1|4377300_4377948_-	VOC family protein	NA	NA	NA	NA	NA
WP_144058349.1|4378166_4378433_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015666953.1|4378927_4379719_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_015666954.1|4379817_4380318_+	DUF1993 domain-containing protein	NA	NA	NA	NA	NA
WP_015666955.1|4380356_4380737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015666956.1|4380915_4381914_-	hydroxyacid dehydrogenase	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	29.9	3.8e-26
WP_015666957.1|4381943_4383044_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	29.9	3.8e-19
WP_015666958.1|4383060_4383972_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_015666959.1|4383971_4384910_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_042339876.1|4385034_4386375_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_042339878.1|4386784_4387513_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
4387123:4387139	attR	CGCGCCGATGCTGACGC	NA	NA	NA	NA
WP_083938627.1|4390524_4391454_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	58.3	1.6e-18
WP_144058517.1|4391563_4397260_-	IPT/TIG domain-containing protein	NA	NA	NA	NA	NA
WP_015666965.1|4397878_4398421_+|tail	phage tail protein	tail	E3T4R8	Cafeteria_roenbergensis_virus	36.0	2.1e-18
WP_015666966.1|4398538_4399066_+|tail	phage tail protein	tail	A0A0U4JXW2	Arthrobacter_phage	37.3	7.0e-19
WP_015666967.1|4399113_4399665_+|tail	tail fiber protein	tail	NA	NA	NA	NA
WP_144058518.1|4399722_4400199_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_042340806.1|4400220_4401177_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_015666970.1|4401343_4402603_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.6	1.5e-48
WP_015666971.1|4402607_4403288_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	39.2	1.0e-30
WP_015666972.1|4403284_4404325_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_015666973.1|4404407_4406558_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.9	4.6e-101
WP_015666974.1|4406557_4407349_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_015666975.1|4407345_4408146_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_015666976.1|4408318_4408948_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_015666977.1|4409050_4410694_-	acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	31.0	5.0e-31
WP_015666978.1|4410722_4412609_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_015666979.1|4412698_4413718_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_042340808.1|4414193_4415027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144058350.1|4415052_4415889_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015666982.1|4415930_4416983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042339882.1|4417066_4418536_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.0	1.1e-10
WP_015666984.1|4418532_4419462_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_015666985.1|4419464_4420340_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_042339885.1|4420414_4421647_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015666987.1|4421944_4422670_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
