assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000344575.1_ASM34457v1	NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	1	684003-684106	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	AGGAAGTCATTCAATCAGTGAATGAAGGAACT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA	NA|324aa|up_9|NC_020450.1_667427_668399_+	COG0781, NusB, Transcription termination factor [Transcription]	NA|668aa|up_8|NC_020450.1_668614_670618_+	PLN02950, PLN02950, 4-alpha-glucanotransferase	NA|381aa|up_7|NC_020450.1_670718_671861_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|380aa|up_6|NC_020450.1_671850_672990_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|479aa|up_5|NC_020450.1_673084_674521_+	PRK00654, glgA, glycogen synthase GlgA	NA|801aa|up_4|NC_020450.1_674609_677012_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|601aa|up_3|NC_020450.1_677101_678904_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|498aa|up_2|NC_020450.1_679129_680623_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|492aa|up_1|NC_020450.1_681337_682813_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|332aa|up_0|NC_020450.1_682812_683808_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|621aa|down_0|NC_020450.1_684163_686026_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|574aa|down_1|NC_020450.1_686025_687747_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|292aa|down_2|NC_020450.1_688039_688915_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|152aa|down_3|NC_020450.1_688940_689396_+	COG4635, HemG, Flavodoxin [Energy production and conversion / Coenzyme metabolism]	NA|225aa|down_4|NC_020450.1_689422_690097_+	cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases	NA|585aa|down_5|NC_020450.1_690198_691953_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|204aa|down_6|NC_020450.1_691971_692583_-	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|215aa|down_7|NC_020450.1_692653_693298_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|665aa|down_8|NC_020450.1_693504_695499_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|73aa|down_9|NC_020450.1_695605_695824_-	pfam09855, zinc_ribbon_13, Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
GCF_000344575.1_ASM34457v1	NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	2	1193515-1193630	2	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG	Orphan	AAATGCGATTGAATAGTGAGCATTTTAGTTGTTGATAAAAGAAC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA	NA|264aa|up_9|NC_020450.1_1183770_1184562_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|201aa|up_8|NC_020450.1_1184558_1185161_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|263aa|up_7|NC_020450.1_1185157_1185946_+	COG3231, Aph, Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis]	NA|203aa|up_6|NC_020450.1_1185984_1186593_+	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|240aa|up_5|NC_020450.1_1186593_1187313_+	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	NA|260aa|up_4|NC_020450.1_1187302_1188082_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|213aa|up_3|NC_020450.1_1188078_1188717_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|270aa|up_2|NC_020450.1_1188717_1189527_+	TIGR01856, Probable_histidinol-phosphatase, histidinol phosphate phosphatase, HisJ family	NA|320aa|up_1|NC_020450.1_1189540_1190500_-	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|514aa|up_0|NC_020450.1_1190924_1192466_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|461aa|down_0|NC_020450.1_1193711_1195094_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|192aa|down_1|NC_020450.1_1195113_1195689_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|260aa|down_2|NC_020450.1_1195702_1196482_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|571aa|down_3|NC_020450.1_1196603_1198316_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|576aa|down_4|NC_020450.1_1198326_1200054_+	PRK07282, PRK07282, acetolactate synthase large subunit	NA|159aa|down_5|NC_020450.1_1200046_1200523_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|341aa|down_6|NC_020450.1_1200568_1201591_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|417aa|down_7|NC_020450.1_1201646_1202897_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|237aa|down_8|NC_020450.1_1203012_1203723_+	TIGR01252, Alpha-acetolactate_decarboxylase, alpha-acetolactate decarboxylase	NA|127aa|down_9|NC_020450.1_1203763_1204144_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase
GCF_000344575.1_ASM34457v1	NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	3	1805689-1805783	3	CRISPRCasFinder	no	csa3	cas3,WYL,DEDDh,csa3,DinG	Type I-A	GATTTGCTGACAGTTCTGTCAGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG	NA,NA|332aa|down_7|NC_020450.1_1816850_1817846_+,NA|315aa|down_8|NC_020450.1_1817851_1818796_+,NA|186aa|down_9|NC_020450.1_1818797_1819355_+	NA|278aa|up_9|NC_020450.1_1791014_1791848_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|247aa|up_8|NC_020450.1_1791884_1792625_-	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family	NA|902aa|up_7|NC_020450.1_1792722_1795428_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|478aa|up_6|NC_020450.1_1795687_1797121_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|89aa|up_5|NC_020450.1_1797242_1797509_-	COG0759, COG0759, Uncharacterized conserved protein [Function unknown]	NA|581aa|up_4|NC_020450.1_1797625_1799368_-	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|457aa|up_3|NC_020450.1_1799515_1800886_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|up_2|NC_020450.1_1800979_1801657_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|325aa|up_1|NC_020450.1_1801825_1802800_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|752aa|up_0|NC_020450.1_1802952_1805208_-	PRK13807, PRK13807, maltose phosphorylase; Provisional	NA|525aa|down_0|NC_020450.1_1806982_1808557_-	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|202aa|down_1|NC_020450.1_1808546_1809152_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|532aa|down_2|NC_020450.1_1809178_1810774_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|585aa|down_3|NC_020450.1_1811010_1812765_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|409aa|down_4|NC_020450.1_1813132_1814359_+	cd13655, PBP2_oligosaccharide_1, The periplasmic binding component of ABC tansport system specific for an unknown oligosaccharide; possess the type 2 periplasmic binidng fold	NA|448aa|down_5|NC_020450.1_1814475_1815819_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|289aa|down_6|NC_020450.1_1815824_1816691_+	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]	NA|332aa|down_7|NC_020450.1_1816850_1817846_+	NA	NA|315aa|down_8|NC_020450.1_1817851_1818796_+	NA	NA|186aa|down_9|NC_020450.1_1818797_1819355_+	NA
