assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000340785.1_ASM34078v1	NC_020287	Synechocystis sp. PCC 6803 plasmid pSYSA_M, complete sequence	1	16310-17502	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	Type I-D	CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC,CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC,CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	16,16,16	16	TypeI-D	DinG,RT,cas4,csa3,c2c9_V-U4,DEDDh,PD-DExK,cas3,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	NA,NA|639aa|down_0|NC_020287.1_17866_19783_+,NA|126aa|down_3|NC_020287.1_22109_22487_+,NA|195aa|down_4|NC_020287.1_22525_23110_-	NA|339aa|up_9|NC_020287.1_4240_5257_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	WYL|315aa|up_8|NC_020287.1_5339_6284_-	pfam13280, WYL, WYL domain	cas3|723aa|up_7|NC_020287.1_6348_8517_+	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain	cas10d|976aa|up_6|NC_020287.1_8530_11458_+	cd09712, Cas10d_I-D, CRISPR/Cas system-associated protein Cas10d	csc2gr7|330aa|up_5|NC_020287.1_11523_12513_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|255aa|up_4|NC_020287.1_12673_13438_+	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1	cas6|263aa|up_3|NC_020287.1_13440_14229_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas4|191aa|up_2|NC_020287.1_14221_14794_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|326aa|up_1|NC_020287.1_14803_15781_+	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	cas2|95aa|up_0|NC_020287.1_15812_16097_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|639aa|down_0|NC_020287.1_17866_19783_+	NA	NA|577aa|down_1|NC_020287.1_19928_21659_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|139aa|down_2|NC_020287.1_21679_22096_+	COG3680, COG3680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_3|NC_020287.1_22109_22487_+	NA	NA|195aa|down_4|NC_020287.1_22525_23110_-	NA	NA|419aa|down_5|NC_020287.1_23952_25209_-	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown]	NA|342aa|down_6|NC_020287.1_25205_26231_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|168aa|down_7|NC_020287.1_26450_26954_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|101aa|down_8|NC_020287.1_26937_27240_-	pfam08681, DUF1778, Protein of unknown function (DUF1778)	NA|106aa|down_9|NC_020287.1_27952_28270_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]
GCF_000340785.1_ASM34078v1	NC_020287	Synechocystis sp. PCC 6803 plasmid pSYSA_M, complete sequence	2	66100-70220	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csx1,csm6,csm3gr7,csx19,cas10,cas6,csx18,cas1,cas2,WYL,csx3,cmr5gr11,cmr4gr7,cmr3gr5	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	Type III-C,Type III-B, Type III-B?,Type III-D,Type III-A	GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC,GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC,GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC,GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC	37,37,37,37	0	0	NA	NA	NA:NA:NA:NA	53,54,54,53	54	TypeIII-C,TypeIII-B,TypeIII-B?,TypeIII-D,TypeIII-A	DinG,RT,cas4,csa3,c2c9_V-U4,DEDDh,PD-DExK,cas3,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	csx18|105aa|up_6|NC_020287.1_61605_61920_-,NA|115aa|up_2|NC_020287.1_63823_64168_+,csx3|311aa|down_2|NC_020287.1_72598_73531_+,NA|76aa|down_6|NC_020287.1_77262_77490_+,cmr5gr11|132aa|down_8|NC_020287.1_79637_80033_-	csm3gr7|792aa|up_9|NC_020287.1_56127_58503_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|559aa|up_8|NC_020287.1_58505_60182_-	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	cas6|368aa|up_7|NC_020287.1_60508_61612_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx18|105aa|up_6|NC_020287.1_61605_61920_-	NA	NA|125aa|up_5|NC_020287.1_61916_62291_-	pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family	cas1|337aa|up_4|NC_020287.1_62422_63433_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|94aa|up_3|NC_020287.1_63442_63724_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|115aa|up_2|NC_020287.1_63823_64168_+	NA	NA|99aa|up_1|NC_020287.1_64210_64507_-	pfam10779, XhlA, Haemolysin XhlA	NA|347aa|up_0|NC_020287.1_64536_65577_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|194aa|down_0|NC_020287.1_70319_70901_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	WYL|482aa|down_1|NC_020287.1_70924_72370_-	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family	csx3|311aa|down_2|NC_020287.1_72598_73531_+	NA	NA|463aa|down_3|NC_020287.1_73645_75034_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|320aa|down_4|NC_020287.1_75073_76033_+	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain	NA|378aa|down_5|NC_020287.1_76083_77217_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|76aa|down_6|NC_020287.1_77262_77490_+	NA	csm3gr7|577aa|down_7|NC_020287.1_77644_79375_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|132aa|down_8|NC_020287.1_79637_80033_-	NA	cmr4gr7|260aa|down_9|NC_020287.1_80071_80851_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4
GCF_000340785.1_ASM34078v1	NC_020287	Synechocystis sp. PCC 6803 plasmid pSYSA_M, complete sequence	3	87547-90400	4,3,3,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,csx3,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx18,cas1,cas2	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	Type III-C,Type III-A,Type III-D,Type III-B	GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC,GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC,GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC,GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	35,38,38,35	38	TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B	DinG,RT,cas4,csa3,c2c9_V-U4,DEDDh,PD-DExK,cas3,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	NA|76aa|up_9|NC_020287.1_77262_77490_+,cmr5gr11|132aa|up_7|NC_020287.1_79637_80033_-,csx18|123aa|up_2|NC_020287.1_85703_86072_+,NA|47aa|down_0|NC_020287.1_90517_90658_+,NA|130aa|down_1|NC_020287.1_90706_91096_+,NA|138aa|down_3|NC_020287.1_91639_92053_+,NA|291aa|down_5|NC_020287.1_92810_93683_+,NA|197aa|down_6|NC_020287.1_93789_94380_+,NA|450aa|down_7|NC_020287.1_94614_95964_+	NA|76aa|up_9|NC_020287.1_77262_77490_+	NA	csm3gr7|577aa|up_8|NC_020287.1_77644_79375_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|132aa|up_7|NC_020287.1_79637_80033_-	NA	cmr4gr7|260aa|up_6|NC_020287.1_80071_80851_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	NA|127aa|up_5|NC_020287.1_80942_81323_+	TIGR03698, clan_AA_DTGF, clan AA aspartic protease, AF_0612 family	cmr3gr5|371aa|up_4|NC_020287.1_81346_82459_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|980aa|up_3|NC_020287.1_82640_85580_-	pfam12469, DUF3692, CRISPR-associated protein	csx18|123aa|up_2|NC_020287.1_85703_86072_+	NA	cas1|330aa|up_1|NC_020287.1_86068_87058_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|93aa|up_0|NC_020287.1_87061_87340_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|47aa|down_0|NC_020287.1_90517_90658_+	NA	NA|130aa|down_1|NC_020287.1_90706_91096_+	NA	NA|172aa|down_2|NC_020287.1_91114_91630_+	COG4639, COG4639, Predicted kinase [General function prediction only]	NA|138aa|down_3|NC_020287.1_91639_92053_+	NA	NA|209aa|down_4|NC_020287.1_92159_92786_+	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]	NA|291aa|down_5|NC_020287.1_92810_93683_+	NA	NA|197aa|down_6|NC_020287.1_93789_94380_+	NA	NA|450aa|down_7|NC_020287.1_94614_95964_+	NA	NA|181aa|down_8|NC_020287.1_95914_96457_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|339aa|down_9|NC_020287.1_96566_97583_+	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000340785.1_ASM34078v1	NC_020290	Synechocystis sp. PCC 6803 plasmid pCC5.2_M, complete sequence	1	455-556	1	CRISPRCasFinder	no			Orphan	GATAATCTACTGCAACACCTATA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,RT,cas4,csa3,c2c9_V-U4,DEDDh,PD-DExK,cas3,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas1,cas2,csx1,csm6,csm3gr7,csx19,cas10,csx18,csx3,cmr5gr11,cmr4gr7,cmr3gr5	NA,NA|94aa|down_1|NC_020290.1_4577_4859_+,NA|92aa|down_2|NC_020290.1_4860_5136_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|972aa|down_0|NC_020290.1_1599_4515_+	pfam12965, DUF3854, Domain of unknown function (DUF3854)	NA|94aa|down_1|NC_020290.1_4577_4859_+	NA	NA|92aa|down_2|NC_020290.1_4860_5136_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
