assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	1	542175-542266	1	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	ATGGCCAACAATCCAACCAGCAGCTG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|134aa|up_6|NZ_CP011883.2_531318_531720_-,NA|285aa|up_2|NZ_CP011883.2_535450_536305_+,NA|60aa|down_0|NZ_CP011883.2_542955_543135_-,NA|46aa|down_2|NZ_CP011883.2_544893_545031_+	NA|165aa|up_9|NZ_CP011883.2_527849_528344_-	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains	NA|542aa|up_8|NZ_CP011883.2_528655_530281_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|287aa|up_7|NZ_CP011883.2_530434_531295_+	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|134aa|up_6|NZ_CP011883.2_531318_531720_-	NA	NA|434aa|up_5|NZ_CP011883.2_531737_533039_-	pfam00823, PPE, PPE family	NA|128aa|up_4|NZ_CP011883.2_534532_534916_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|172aa|up_3|NZ_CP011883.2_534926_535442_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|285aa|up_2|NZ_CP011883.2_535450_536305_+	NA	NA|192aa|up_1|NZ_CP011883.2_537054_537630_-	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK	NA|400aa|up_0|NZ_CP011883.2_538286_539486_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|60aa|down_0|NZ_CP011883.2_542955_543135_-	NA	NA|305aa|down_1|NZ_CP011883.2_543223_544138_-	pfam00823, PPE, PPE family	NA|46aa|down_2|NZ_CP011883.2_544893_545031_+	NA	NA|408aa|down_3|NZ_CP011883.2_545274_546498_+	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases	NA|58aa|down_4|NZ_CP011883.2_546497_546671_+	pfam00301, Rubredoxin, Rubredoxin	NA|61aa|down_5|NZ_CP011883.2_546667_546850_+	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|212aa|down_6|NZ_CP011883.2_546846_547482_+	pfam18556, TetR_C_35, Bacterial Tetracyclin repressor, C-terminal domain	NA|310aa|down_7|NZ_CP011883.2_547678_548608_+	pfam00823, PPE, PPE family	NA|961aa|down_8|NZ_CP011883.2_549374_552257_-	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|141aa|down_9|NZ_CP011883.2_552253_552676_-	pfam05423, Mycobact_memb, Mycobacterium membrane protein
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	2	947854-947936	2	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	GCGGCGCTATTCGCGCCTTAGCCGCGAC	28	1	1	947882-947908	NZ_CP011883.2_938346-938372	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|54aa|up_8|NZ_CP011883.2_940609_940771_-,NA	NA|102aa|up_9|NZ_CP011883.2_940224_940530_-	pfam01527, HTH_Tnp_1, Transposase	NA|54aa|up_8|NZ_CP011883.2_940609_940771_-	NA	NA|282aa|up_7|NZ_CP011883.2_941037_941883_+	pfam00934, PE, PE family	NA|181aa|up_6|NZ_CP011883.2_942149_942692_+	pfam00823, PPE, PPE family	NA|517aa|up_5|NZ_CP011883.2_942948_944499_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|151aa|up_4|NZ_CP011883.2_944768_945221_+	pfam00934, PE, PE family	NA|195aa|up_3|NZ_CP011883.2_945452_946037_+	pfam00823, PPE, PPE family	NA|100aa|up_2|NZ_CP011883.2_946245_946545_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|96aa|up_1|NZ_CP011883.2_946613_946901_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|191aa|up_0|NZ_CP011883.2_947103_947676_+	pfam00823, PPE, PPE family	NA|291aa|down_0|NZ_CP011883.2_949267_950140_-	pfam04185, Phosphoesterase, Phosphoesterase family	NA|208aa|down_1|NZ_CP011883.2_950254_950878_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|538aa|down_2|NZ_CP011883.2_950890_952504_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|269aa|down_3|NZ_CP011883.2_952512_953319_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|398aa|down_4|NZ_CP011883.2_953495_954689_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|390aa|down_5|NZ_CP011883.2_954685_955855_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|294aa|down_6|NZ_CP011883.2_955914_956796_-	pfam18741, MTES_1575, REase_MTES_1575	NA|160aa|down_7|NZ_CP011883.2_956909_957389_-	pfam13772, AIG2_2, AIG2-like family	NA|478aa|down_8|NZ_CP011883.2_957472_958906_+	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|586aa|down_9|NZ_CP011883.2_958985_960743_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	3	1108170-1108261	3	CRISPRCasFinder	no	cas3	cas3,csa3,WYL,DinG,DEDDh	Unclear	GCGGGCCGTGTATCGGCCCGGTG	23	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,WYL,DinG,DEDDh	NA|71aa|up_6|NZ_CP011883.2_1097738_1097951_-,NA|67aa|down_7|NZ_CP011883.2_1115842_1116043_+	NA|285aa|up_9|NZ_CP011883.2_1095705_1096560_+	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein	NA|101aa|up_8|NZ_CP011883.2_1096575_1096878_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|262aa|up_7|NZ_CP011883.2_1096880_1097666_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|71aa|up_6|NZ_CP011883.2_1097738_1097951_-	NA	NA|1070aa|up_5|NZ_CP011883.2_1098225_1101435_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1123aa|up_4|NZ_CP011883.2_1101431_1104800_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|357aa|up_3|NZ_CP011883.2_1104903_1105974_+	pfam02254, TrkA_N, TrkA-N domain	NA|313aa|up_2|NZ_CP011883.2_1106015_1106954_+	PRK00241, nudC, NAD(+) diphosphatase	NA|239aa|up_1|NZ_CP011883.2_1106962_1107679_-	pfam14032, PknH_C, PknH-like extracellular domain	NA|85aa|up_0|NZ_CP011883.2_1107887_1108142_-	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|715aa|down_0|NZ_CP011883.2_1108340_1110485_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|90aa|down_1|NZ_CP011883.2_1110964_1111234_+	pfam02467, Whib, Transcription factor WhiB	NA|82aa|down_2|NZ_CP011883.2_1111402_1111648_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|147aa|down_3|NZ_CP011883.2_1112520_1112961_+	pfam00934, PE, PE family	NA|199aa|down_4|NZ_CP011883.2_1113234_1113831_+	pfam00823, PPE, PPE family	NA|109aa|down_5|NZ_CP011883.2_1113867_1114194_+	pfam13936, HTH_38, Helix-turn-helix domain	NA|445aa|down_6|NZ_CP011883.2_1114406_1115741_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|67aa|down_7|NZ_CP011883.2_1115842_1116043_+	NA	NA|286aa|down_8|NZ_CP011883.2_1116057_1116915_-	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain	NA|482aa|down_9|NZ_CP011883.2_1116953_1118399_-	COG5282, COG5282, Uncharacterized conserved protein [Function unknown]
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	4	1237044-1237122	4	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,DinG,DEDDh	Type I-A	CCGGGCGCAGCGGGTCGTCACCATC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|372aa|up_7|NZ_CP011883.2_1226919_1228035_-,NA|161aa|up_4|NZ_CP011883.2_1230955_1231438_+,NA|150aa|up_1|NZ_CP011883.2_1233698_1234148_+,NA	NA|328aa|up_9|NZ_CP011883.2_1223722_1224706_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|449aa|up_8|NZ_CP011883.2_1224700_1226047_-	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]	NA|372aa|up_7|NZ_CP011883.2_1226919_1228035_-	NA	NA|389aa|up_6|NZ_CP011883.2_1228034_1229201_-	COG3173, COG3173, Predicted aminoglycoside phosphotransferase [General function prediction only]	NA|321aa|up_5|NZ_CP011883.2_1229996_1230959_+	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|161aa|up_4|NZ_CP011883.2_1230955_1231438_+	NA	NA|324aa|up_3|NZ_CP011883.2_1231446_1232418_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|424aa|up_2|NZ_CP011883.2_1232425_1233697_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|150aa|up_1|NZ_CP011883.2_1233698_1234148_+	NA	NA|533aa|up_0|NZ_CP011883.2_1234156_1235755_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|635aa|down_0|NZ_CP011883.2_1237439_1239344_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|100aa|down_1|NZ_CP011883.2_1239354_1239654_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|265aa|down_2|NZ_CP011883.2_1239650_1240445_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|193aa|down_3|NZ_CP011883.2_1240441_1241020_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|407aa|down_4|NZ_CP011883.2_1240991_1242212_-	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|806aa|down_5|NZ_CP011883.2_1242294_1244712_-	PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated	NA|445aa|down_6|NZ_CP011883.2_1244708_1246043_-	TIGR01959, NADH-quinone_oxidoreductase_subunit_F, NADH-quinone oxidoreductase, F subunit	NA|260aa|down_7|NZ_CP011883.2_1246042_1246822_-	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE	NA|441aa|down_8|NZ_CP011883.2_1246818_1248141_-	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|229aa|down_9|NZ_CP011883.2_1248140_1248827_-	PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	5	1272883-1272982	5	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,DinG,DEDDh	Type I-A	GCCGTGCTTGCGATCGCCACTAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|46aa|up_4|NZ_CP011883.2_1268937_1269075_-,NA|141aa|up_1|NZ_CP011883.2_1271088_1271511_+,NA	NA|320aa|up_9|NZ_CP011883.2_1263183_1264143_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|230aa|up_8|NZ_CP011883.2_1264501_1265191_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|298aa|up_7|NZ_CP011883.2_1265191_1266085_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|165aa|up_6|NZ_CP011883.2_1266087_1266582_+	pfam01668, SmpB, SmpB protein	NA|282aa|up_5|NZ_CP011883.2_1266607_1267453_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|46aa|up_4|NZ_CP011883.2_1268937_1269075_-	NA	NA|389aa|up_3|NZ_CP011883.2_1269087_1270254_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|203aa|up_2|NZ_CP011883.2_1270414_1271023_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|141aa|up_1|NZ_CP011883.2_1271088_1271511_+	NA	NA|454aa|up_0|NZ_CP011883.2_1271465_1272827_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|260aa|down_0|NZ_CP011883.2_1273732_1274512_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	csa3|225aa|down_1|NZ_CP011883.2_1274530_1275205_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|217aa|down_2|NZ_CP011883.2_1275544_1276195_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|176aa|down_3|NZ_CP011883.2_1276347_1276875_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|296aa|down_4|NZ_CP011883.2_1277029_1277917_+	PRK06179, PRK06179, short chain dehydrogenase; Provisional	NA|270aa|down_5|NZ_CP011883.2_1278186_1278996_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|128aa|down_6|NZ_CP011883.2_1279037_1279421_+	pfam11042, DUF2750, Protein of unknown function (DUF2750)	NA|312aa|down_7|NZ_CP011883.2_1279523_1280459_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|113aa|down_8|NZ_CP011883.2_1280478_1280817_+	pfam13564, DoxX_2, DoxX-like family	NA|242aa|down_9|NZ_CP011883.2_1280824_1281550_+	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	6	1393925-1394025	6	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CGAAGCGATGAGGAGGAGCGGCGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|502aa|up_9|NZ_CP011883.2_1381547_1383053_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|306aa|up_8|NZ_CP011883.2_1383111_1384029_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|374aa|up_7|NZ_CP011883.2_1384142_1385264_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|281aa|up_6|NZ_CP011883.2_1385511_1386354_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|119aa|up_5|NZ_CP011883.2_1386360_1386717_-	pfam10756, bPH_6, Bacterial PH domain	NA|626aa|up_4|NZ_CP011883.2_1387063_1388941_+	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated	NA|171aa|up_3|NZ_CP011883.2_1388990_1389503_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|334aa|up_2|NZ_CP011883.2_1389544_1390546_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|480aa|up_1|NZ_CP011883.2_1390845_1392285_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|529aa|up_0|NZ_CP011883.2_1392314_1393901_+	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|337aa|down_0|NZ_CP011883.2_1394027_1395038_+	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|448aa|down_1|NZ_CP011883.2_1394997_1396341_-	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily	NA|273aa|down_2|NZ_CP011883.2_1396494_1397313_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|500aa|down_3|NZ_CP011883.2_1397309_1398809_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|169aa|down_4|NZ_CP011883.2_1399263_1399770_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|234aa|down_5|NZ_CP011883.2_1399893_1400595_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|488aa|down_6|NZ_CP011883.2_1400680_1402144_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|199aa|down_7|NZ_CP011883.2_1402166_1402763_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|214aa|down_8|NZ_CP011883.2_1402977_1403619_+	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]	NA|312aa|down_9|NZ_CP011883.2_1403687_1404623_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	7	1500271-1500394	7	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	ATCGGCGCCGGTGACGATGCAGAGCGCAGCGATGAGG	37	1	3	1500308-1500357|1500308-1500357|1500308-1500357	NZ_CP011883.2_167882-167931|NZ_CP011883.2_167969-168018|NZ_CP011883.2_131091-131042	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|298aa|up_9|NZ_CP011883.2_1490486_1491380_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|177aa|up_8|NZ_CP011883.2_1491407_1491938_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|278aa|up_7|NZ_CP011883.2_1492236_1493070_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|277aa|up_6|NZ_CP011883.2_1493082_1493913_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|469aa|up_5|NZ_CP011883.2_1493963_1495370_+	PRK07869, PRK07869, amidase; Provisional	NA|140aa|up_4|NZ_CP011883.2_1495373_1495793_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|537aa|up_3|NZ_CP011883.2_1495915_1497526_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|166aa|up_2|NZ_CP011883.2_1497620_1498118_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|245aa|up_1|NZ_CP011883.2_1498186_1498921_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|280aa|up_0|NZ_CP011883.2_1499421_1500261_+	PRK00358, pyrH, uridylate kinase; Provisional	NA|186aa|down_0|NZ_CP011883.2_1500407_1500965_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|314aa|down_1|NZ_CP011883.2_1500995_1501937_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|386aa|down_2|NZ_CP011883.2_1501959_1503117_+	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional	NA|170aa|down_3|NZ_CP011883.2_1503173_1503683_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|303aa|down_4|NZ_CP011883.2_1503687_1504596_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|101aa|down_5|NZ_CP011883.2_1504970_1505273_-	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|395aa|down_6|NZ_CP011883.2_1505369_1506554_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|408aa|down_7|NZ_CP011883.2_1506562_1507786_+	pfam02163, Peptidase_M50, Peptidase family M50	NA|393aa|down_8|NZ_CP011883.2_1507818_1508997_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|285aa|down_9|NZ_CP011883.2_1509052_1509907_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	8	1503016-1503110	8	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	GCCTGCGGACAGCTGGCCGCCGAAGGCGGGCGAGC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|278aa|up_9|NZ_CP011883.2_1492236_1493070_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|277aa|up_8|NZ_CP011883.2_1493082_1493913_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|469aa|up_7|NZ_CP011883.2_1493963_1495370_+	PRK07869, PRK07869, amidase; Provisional	NA|140aa|up_6|NZ_CP011883.2_1495373_1495793_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|537aa|up_5|NZ_CP011883.2_1495915_1497526_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|166aa|up_4|NZ_CP011883.2_1497620_1498118_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|245aa|up_3|NZ_CP011883.2_1498186_1498921_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|280aa|up_2|NZ_CP011883.2_1499421_1500261_+	PRK00358, pyrH, uridylate kinase; Provisional	NA|186aa|up_1|NZ_CP011883.2_1500407_1500965_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|314aa|up_0|NZ_CP011883.2_1500995_1501937_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|170aa|down_0|NZ_CP011883.2_1503173_1503683_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|303aa|down_1|NZ_CP011883.2_1503687_1504596_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|101aa|down_2|NZ_CP011883.2_1504970_1505273_-	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|395aa|down_3|NZ_CP011883.2_1505369_1506554_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|408aa|down_4|NZ_CP011883.2_1506562_1507786_+	pfam02163, Peptidase_M50, Peptidase family M50	NA|393aa|down_5|NZ_CP011883.2_1507818_1508997_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|285aa|down_6|NZ_CP011883.2_1509052_1509907_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|608aa|down_7|NZ_CP011883.2_1510086_1511910_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|170aa|down_8|NZ_CP011883.2_1512051_1512561_+	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|286aa|down_9|NZ_CP011883.2_1512706_1513564_+	PRK12896, PRK12896, methionine aminopeptidase; Reviewed
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	9	1793372-1793453	9	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	GGGTCGCCACGCAGTAAATCTCGTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|208aa|up_7|NZ_CP011883.2_1784473_1785097_-,NA|226aa|down_2|NZ_CP011883.2_1794982_1795660_-	NA|351aa|up_9|NZ_CP011883.2_1781892_1782945_+	COG4307, COG4307, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_8|NZ_CP011883.2_1783083_1784439_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|208aa|up_7|NZ_CP011883.2_1784473_1785097_-	NA	NA|130aa|up_6|NZ_CP011883.2_1785273_1785663_+	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|908aa|up_5|NZ_CP011883.2_1785804_1788528_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|170aa|up_4|NZ_CP011883.2_1788528_1789038_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|418aa|up_3|NZ_CP011883.2_1789030_1790284_+	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|304aa|up_2|NZ_CP011883.2_1790186_1791098_+	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type	NA|143aa|up_1|NZ_CP011883.2_1791108_1791537_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|408aa|up_0|NZ_CP011883.2_1791604_1792828_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|362aa|down_0|NZ_CP011883.2_1793463_1794549_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|146aa|down_1|NZ_CP011883.2_1794548_1794986_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|226aa|down_2|NZ_CP011883.2_1794982_1795660_-	NA	NA|377aa|down_3|NZ_CP011883.2_1795747_1796878_+	cd01092, APP-like, Similar to Prolidase and Aminopeptidase P	NA|188aa|down_4|NZ_CP011883.2_1796892_1797456_+	PRK00529, PRK00529, elongation factor P; Validated	NA|169aa|down_5|NZ_CP011883.2_1797458_1797965_+	PRK00202, nusB, transcription antitermination factor NusB	NA|951aa|down_6|NZ_CP011883.2_1798286_1801139_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP011883.2_1801308_1802559_-	PRK07588, PRK07588, FAD-binding domain	NA|96aa|down_8|NZ_CP011883.2_1803122_1803410_-	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|100aa|down_9|NZ_CP011883.2_1803477_1803777_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	10	1813953-1814063	10	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CTCGTGAACCGCGCCGACGACGATGCAGAGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA|81aa|down_4|NZ_CP011883.2_1822010_1822253_+,NA|51aa|down_9|NZ_CP011883.2_1825978_1826131_-	NA|100aa|up_9|NZ_CP011883.2_1803477_1803777_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|201aa|up_8|NZ_CP011883.2_1803986_1804589_-	pfam00823, PPE, PPE family	NA|195aa|up_7|NZ_CP011883.2_1804776_1805361_-	pfam00823, PPE, PPE family	NA|180aa|up_6|NZ_CP011883.2_1806117_1806657_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|405aa|up_5|NZ_CP011883.2_1806662_1807877_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|220aa|up_4|NZ_CP011883.2_1807887_1808547_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|555aa|up_3|NZ_CP011883.2_1808734_1810399_-	pfam00934, PE, PE family	NA|197aa|up_2|NZ_CP011883.2_1810623_1811214_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|322aa|up_1|NZ_CP011883.2_1811210_1812176_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|431aa|up_0|NZ_CP011883.2_1812172_1813465_+	PRK09357, pyrC, dihydroorotase; Validated	NA|376aa|down_0|NZ_CP011883.2_1814088_1815216_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1124aa|down_1|NZ_CP011883.2_1815316_1818688_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|283aa|down_2|NZ_CP011883.2_1818740_1819589_+	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|103aa|down_3|NZ_CP011883.2_1819776_1820085_+	pfam00934, PE, PE family	NA|81aa|down_4|NZ_CP011883.2_1822010_1822253_+	NA	NA|307aa|down_5|NZ_CP011883.2_1822249_1823170_+	pfam00823, PPE, PPE family	NA|103aa|down_6|NZ_CP011883.2_1823703_1824012_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP011883.2_1824008_1824947_+	pfam00823, PPE, PPE family	NA|156aa|down_8|NZ_CP011883.2_1825309_1825777_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|51aa|down_9|NZ_CP011883.2_1825978_1826131_-	NA
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	11	1857473-1857660	11	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CCGCCGGCTCCACCGGCGCCGCCAGGTG	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|208aa|up_9|NZ_CP011883.2_1846180_1846804_+	PRK09289, PRK09289, riboflavin synthase	NA|426aa|up_8|NZ_CP011883.2_1846968_1848246_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|161aa|up_7|NZ_CP011883.2_1848340_1848823_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|156aa|up_6|NZ_CP011883.2_1848819_1849287_+	pfam10756, bPH_6, Bacterial PH domain	NA|159aa|up_5|NZ_CP011883.2_1850070_1850547_+	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain	NA|161aa|up_4|NZ_CP011883.2_1850655_1851138_+	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain	NA|646aa|up_3|NZ_CP011883.2_1851209_1853147_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|286aa|up_2|NZ_CP011883.2_1853222_1854080_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|363aa|up_1|NZ_CP011883.2_1854076_1855165_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|326aa|up_0|NZ_CP011883.2_1855161_1856139_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|589aa|down_0|NZ_CP011883.2_1859289_1861056_+	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|194aa|down_1|NZ_CP011883.2_1861308_1861890_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|272aa|down_2|NZ_CP011883.2_1862812_1863628_-	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|340aa|down_3|NZ_CP011883.2_1863899_1864919_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|417aa|down_4|NZ_CP011883.2_1864921_1866172_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|down_5|NZ_CP011883.2_1866168_1866954_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|454aa|down_6|NZ_CP011883.2_1867240_1868602_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|78aa|down_7|NZ_CP011883.2_1868931_1869165_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|935aa|down_8|NZ_CP011883.2_1869194_1871999_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|248aa|down_9|NZ_CP011883.2_1872271_1873015_-	TIGR01198, 6-phosphogluconolactonase_6PGL
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	12	1857944-1858127	12	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CCGCCGGCTCCACCGGCGCCGCCAGGTG	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|208aa|up_9|NZ_CP011883.2_1846180_1846804_+	PRK09289, PRK09289, riboflavin synthase	NA|426aa|up_8|NZ_CP011883.2_1846968_1848246_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|161aa|up_7|NZ_CP011883.2_1848340_1848823_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|156aa|up_6|NZ_CP011883.2_1848819_1849287_+	pfam10756, bPH_6, Bacterial PH domain	NA|159aa|up_5|NZ_CP011883.2_1850070_1850547_+	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain	NA|161aa|up_4|NZ_CP011883.2_1850655_1851138_+	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain	NA|646aa|up_3|NZ_CP011883.2_1851209_1853147_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|286aa|up_2|NZ_CP011883.2_1853222_1854080_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|363aa|up_1|NZ_CP011883.2_1854076_1855165_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|326aa|up_0|NZ_CP011883.2_1855161_1856139_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|589aa|down_0|NZ_CP011883.2_1859289_1861056_+	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|194aa|down_1|NZ_CP011883.2_1861308_1861890_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|272aa|down_2|NZ_CP011883.2_1862812_1863628_-	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|340aa|down_3|NZ_CP011883.2_1863899_1864919_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|417aa|down_4|NZ_CP011883.2_1864921_1866172_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|down_5|NZ_CP011883.2_1866168_1866954_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|454aa|down_6|NZ_CP011883.2_1867240_1868602_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|78aa|down_7|NZ_CP011883.2_1868931_1869165_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|935aa|down_8|NZ_CP011883.2_1869194_1871999_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|248aa|down_9|NZ_CP011883.2_1872271_1873015_-	TIGR01198, 6-phosphogluconolactonase_6PGL
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	13	2135356-2135541	13	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCT	44	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA|179aa|down_5|NZ_CP011883.2_2142039_2142576_+,NA|49aa|down_6|NZ_CP011883.2_2142834_2142981_+,NA|226aa|down_9|NZ_CP011883.2_2145232_2145910_-	NA|591aa|up_9|NZ_CP011883.2_2122266_2124039_+	TIGR00634, DNA_repair_protein_RecN, DNA repair protein RecN	NA|394aa|up_8|NZ_CP011883.2_2124247_2125429_+	COG4825, COG4825, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|315aa|up_7|NZ_CP011883.2_2125449_2126394_+	pfam11382, MctB, Copper transport outer membrane protein, MctB	NA|593aa|up_6|NZ_CP011883.2_2126544_2128323_+	PRK05380, pyrG, CTP synthetase; Validated	NA|230aa|up_5|NZ_CP011883.2_2128279_2128969_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|317aa|up_4|NZ_CP011883.2_2128965_2129916_+	PRK00283, xerD, tyrosine recombinase	NA|251aa|up_3|NZ_CP011883.2_2129925_2130678_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|284aa|up_2|NZ_CP011883.2_2130720_2131572_+	pfam00823, PPE, PPE family	NA|509aa|up_1|NZ_CP011883.2_2131688_2133215_+	pfam08237, PE-PPE, PE-PPE domain	NA|288aa|up_0|NZ_CP011883.2_2133698_2134562_+	pfam13614, AAA_31, AAA domain	NA|258aa|down_0|NZ_CP011883.2_2136232_2137006_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|224aa|down_1|NZ_CP011883.2_2137002_2137674_+	PRK00023, cmk, (d)CMP kinase	NA|464aa|down_2|NZ_CP011883.2_2137670_2139062_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|275aa|down_3|NZ_CP011883.2_2139742_2140567_+	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|258aa|down_4|NZ_CP011883.2_2140783_2141557_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|179aa|down_5|NZ_CP011883.2_2142039_2142576_+	NA	NA|49aa|down_6|NZ_CP011883.2_2142834_2142981_+	NA	NA|426aa|down_7|NZ_CP011883.2_2143366_2144644_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|68aa|down_8|NZ_CP011883.2_2144802_2145006_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|226aa|down_9|NZ_CP011883.2_2145232_2145910_-	NA
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	14	2240037-2240120	14	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CCTAGCCCAGCGACGATGCGCGCCG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|640aa|up_9|NZ_CP011883.2_2228369_2230289_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|549aa|up_8|NZ_CP011883.2_2230378_2232025_+	PRK05858, PRK05858, acetolactate synthase	NA|779aa|up_7|NZ_CP011883.2_2232133_2234470_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|up_6|NZ_CP011883.2_2234622_2235252_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|305aa|up_5|NZ_CP011883.2_2235244_2236159_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_4|NZ_CP011883.2_2236220_2236553_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|297aa|up_3|NZ_CP011883.2_2236620_2237511_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|133aa|up_2|NZ_CP011883.2_2237546_2237945_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|up_1|NZ_CP011883.2_2238189_2238678_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|252aa|up_0|NZ_CP011883.2_2238674_2239430_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|232aa|down_0|NZ_CP011883.2_2240324_2241020_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|947aa|down_1|NZ_CP011883.2_2241353_2244194_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|down_2|NZ_CP011883.2_2244220_2245081_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|715aa|down_3|NZ_CP011883.2_2245106_2247251_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|736aa|down_4|NZ_CP011883.2_2247353_2249561_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|349aa|down_5|NZ_CP011883.2_2249819_2250866_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|460aa|down_6|NZ_CP011883.2_2250865_2252245_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_7|NZ_CP011883.2_2252463_2253900_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_8|NZ_CP011883.2_2253934_2255386_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_9|NZ_CP011883.2_2255513_2256464_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	15	3035013-3035093	15	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	GAGCCGGGCAATGCAGCCCAGCC	23	1	1	3035036-3035070	NZ_CP011883.2_3034978-3035012	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA|119aa|down_0|NZ_CP011883.2_3035425_3035782_+,NA|157aa|down_5|NZ_CP011883.2_3039602_3040073_-	NA|218aa|up_9|NZ_CP011883.2_3023049_3023703_-	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family	NA|315aa|up_8|NZ_CP011883.2_3023699_3024644_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|358aa|up_7|NZ_CP011883.2_3024640_3025714_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|80aa|up_6|NZ_CP011883.2_3025808_3026048_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|612aa|up_5|NZ_CP011883.2_3026288_3028124_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|322aa|up_4|NZ_CP011883.2_3028390_3029356_-	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism]	NA|361aa|up_3|NZ_CP011883.2_3029423_3030506_-	PRK07409, PRK07409, threonine synthase; Validated	NA|442aa|up_2|NZ_CP011883.2_3030502_3031828_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|473aa|up_1|NZ_CP011883.2_3031849_3033268_-	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|551aa|up_0|NZ_CP011883.2_3033264_3034917_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|119aa|down_0|NZ_CP011883.2_3035425_3035782_+	NA	NA|100aa|down_1|NZ_CP011883.2_3036386_3036686_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|97aa|down_2|NZ_CP011883.2_3036700_3036991_-	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|196aa|down_3|NZ_CP011883.2_3037458_3038046_+	pfam00934, PE, PE family	NA|215aa|down_4|NZ_CP011883.2_3038068_3038713_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|157aa|down_5|NZ_CP011883.2_3039602_3040073_-	NA	NA|177aa|down_6|NZ_CP011883.2_3040196_3040727_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|179aa|down_7|NZ_CP011883.2_3040763_3041300_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|130aa|down_8|NZ_CP011883.2_3041430_3041820_+	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|162aa|down_9|NZ_CP011883.2_3041816_3042302_-	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	16	3162207-3162288	16	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	AGCCCTGCGACAATGCGGGCCGCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA|48aa|down_8|NZ_CP011883.2_3180406_3180550_+	NA|544aa|up_9|NZ_CP011883.2_3150976_3152608_-	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1	NA|544aa|up_8|NZ_CP011883.2_3152691_3154323_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|580aa|up_7|NZ_CP011883.2_3154503_3156243_+	PRK05850, PRK05850, acyl-CoA synthetase; Validated	NA|231aa|up_6|NZ_CP011883.2_3156275_3156968_+	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|362aa|up_5|NZ_CP011883.2_3157127_3158213_+	pfam08237, PE-PPE, PE-PPE domain	NA|100aa|up_4|NZ_CP011883.2_3158851_3159151_+	pfam00934, PE, PE family	NA|197aa|up_3|NZ_CP011883.2_3159198_3159789_+	pfam00823, PPE, PPE family	NA|197aa|up_2|NZ_CP011883.2_3160262_3160853_+	pfam00823, PPE, PPE family	NA|100aa|up_1|NZ_CP011883.2_3161243_3161543_+	pfam00934, PE, PE family	NA|196aa|up_0|NZ_CP011883.2_3161590_3162178_+	pfam00823, PPE, PPE family	NA|1005aa|down_0|NZ_CP011883.2_3162314_3165329_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|472aa|down_1|NZ_CP011883.2_3165413_3166829_-	COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|2134aa|down_2|NZ_CP011883.2_3166908_3173310_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|down_3|NZ_CP011883.2_3173610_3174825_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|792aa|down_4|NZ_CP011883.2_3174851_3177227_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|362aa|down_5|NZ_CP011883.2_3177251_3178337_-	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|109aa|down_6|NZ_CP011883.2_3178390_3178717_-	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|445aa|down_7|NZ_CP011883.2_3179075_3180410_+	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|48aa|down_8|NZ_CP011883.2_3180406_3180550_+	NA	NA|141aa|down_9|NZ_CP011883.2_3180570_3180993_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_000340435.2_ASM34043v3	NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	17	3701613-3701699	17	CRISPRCasFinder	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CGAGGTTGCATGCGTGGCGACCCGCTACGC	30	1	40	3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669|3701643-3701669	NZ_CP011883.2_3500508-3500534|NZ_CP011883.2_3500565-3500591|NZ_CP011883.2_701395-701369|NZ_CP011883.2_2620332-2620306|NZ_CP011883.2_2620446-2620420|NZ_CP011883.2_3401261-3401235|NZ_CP011883.2_889228-889254|NZ_CP011883.2_2538464-2538490|NZ_CP011883.2_3029397-3029423|NZ_CP011883.2_3330242-3330268|NZ_CP011883.2_3346499-3346525|NZ_CP011883.2_3346556-3346582|NZ_CP011883.2_368026-368000|NZ_CP011883.2_613681-613655|NZ_CP011883.2_646179-646153|NZ_CP011883.2_872081-872055|NZ_CP011883.2_1355294-1355268|NZ_CP011883.2_1589117-1589091|NZ_CP011883.2_1737012-1736986|NZ_CP011883.2_2558674-2558648|NZ_CP011883.2_2558731-2558705|NZ_CP011883.2_2620389-2620363|NZ_CP011883.2_3949907-3949881|NZ_CP011883.2_3953374-3953348|NZ_CP011883.2_3953431-3953405|NZ_CP011883.2_4024869-4024843|NZ_CP011883.2_476458-476484|NZ_CP011883.2_1347373-1347399|NZ_CP011883.2_1395089-1395115|NZ_CP011883.2_1520715-1520741|NZ_CP011883.2_1833732-1833758|NZ_CP011883.2_2599832-2599858|NZ_CP011883.2_3015324-3015350|NZ_CP011883.2_3015381-3015407|NZ_CP011883.2_3015438-3015464|NZ_CP011883.2_3015495-3015521|NZ_CP011883.2_3111953-3111979|NZ_CP011883.2_3250200-3250226|NZ_CP011883.2_3542391-3542417|NZ_CP011883.2_3542445-3542471	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|55aa|up_7|NZ_CP011883.2_3692669_3692834_+,NA|191aa|up_5|NZ_CP011883.2_3694425_3694998_+,NA|161aa|up_4|NZ_CP011883.2_3695106_3695589_-,NA|242aa|up_3|NZ_CP011883.2_3695588_3696314_-,NA|107aa|down_9|NZ_CP011883.2_3711194_3711515_+	NA|306aa|up_9|NZ_CP011883.2_3689181_3690099_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|305aa|up_8|NZ_CP011883.2_3690250_3691165_-	PRK08290, PRK08290, enoyl-CoA hydratase; Provisional	NA|55aa|up_7|NZ_CP011883.2_3692669_3692834_+	NA	NA|519aa|up_6|NZ_CP011883.2_3692834_3694391_+	COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]	NA|191aa|up_5|NZ_CP011883.2_3694425_3694998_+	NA	NA|161aa|up_4|NZ_CP011883.2_3695106_3695589_-	NA	NA|242aa|up_3|NZ_CP011883.2_3695588_3696314_-	NA	NA|561aa|up_2|NZ_CP011883.2_3696325_3698008_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|385aa|up_1|NZ_CP011883.2_3698031_3699186_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|465aa|up_0|NZ_CP011883.2_3699182_3700577_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_0|NZ_CP011883.2_3701714_3702767_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|down_1|NZ_CP011883.2_3702760_3703963_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|down_2|NZ_CP011883.2_3703981_3704824_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|down_3|NZ_CP011883.2_3704830_3705595_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|301aa|down_4|NZ_CP011883.2_3705893_3706796_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|down_5|NZ_CP011883.2_3706886_3707078_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|394aa|down_6|NZ_CP011883.2_3707296_3708478_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|366aa|down_7|NZ_CP011883.2_3708500_3709598_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|501aa|down_8|NZ_CP011883.2_3709687_3711190_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|107aa|down_9|NZ_CP011883.2_3711194_3711515_+	NA
