The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	299233	358078	4344092	tRNA,portal,integrase,head,terminase,lysis,plate,capsid,tail	Salmonella_phage(75.56%)	72	298870:298887	347625:347642
298870:298887	attL	AGCGGCGCATTTGCCAGC	NA	NA	NA	NA
WP_004388232.1|299233_299953_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_004388233.1|299952_300279_+	YggL family protein	NA	NA	NA	NA	NA
WP_004388234.1|300329_301046_+	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_007852099.1|301196_301547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386343.1|301666_301909_+	DUF4160 domain-containing protein	NA	NA	NA	NA	NA
WP_007778197.1|301892_302141_+	DUF2442 domain-containing protein	NA	NA	NA	NA	NA
WP_004385472.1|302160_303126_-	GTPase	NA	NA	NA	NA	NA
WP_004385473.1|303144_303348_-	YbdD/YjiX family protein	NA	NA	NA	NA	NA
WP_014728067.1|303607_305761_-	carbon starvation protein A	NA	NA	NA	NA	NA
WP_015386344.1|306543_308592_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_004386711.1|308763_309306_+	sterol desaturase family protein	NA	NA	NA	NA	NA
WP_015386345.1|309193_310165_-	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_004386712.1|310161_311640_-	phytoene desaturase	NA	NA	NA	NA	NA
WP_004386713.1|311632_312808_-	lycopene beta-cyclase CrtY	NA	NA	NA	NA	NA
WP_015386346.1|312804_314079_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_004388237.1|314075_315119_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_004388238.1|315161_316067_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.7	2.5e-08
WP_004388240.1|316328_316877_-	YtfJ family protein	NA	NA	NA	NA	NA
WP_029463846.1|317034_317406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386347.1|317752_318766_-|integrase	tyrosine-type recombinase/integrase	integrase	F1BUS9	Erwinia_phage	60.2	4.8e-117
WP_015386349.1|318992_319607_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.6	7.8e-38
WP_015386350.1|319708_319945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386351.1|319979_320489_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	93.5	1.0e-83
WP_015386352.1|320496_320697_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.9	8.7e-31
WP_015386353.1|320660_321002_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	84.1	1.1e-49
WP_015386354.1|321069_321303_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	79.2	1.6e-23
WP_015386355.1|321302_321530_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	92.0	1.1e-34
WP_015386356.1|321526_322111_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	78.2	2.8e-85
WP_015386357.1|322107_322404_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	45.2	4.3e-10
WP_015386358.1|322400_323261_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	94.0	1.9e-151
WP_015386359.1|323247_325656_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	97.1	0.0e+00
WP_001154443.1|325817_326006_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	98.4	6.1e-26
WP_015386360.1|326017_326251_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	90.9	1.1e-32
WP_015386361.1|326387_327281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105535778.1|327358_327547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386363.1|327539_327956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071823327.1|327984_328272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386364.1|328358_329408_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	79.2	5.4e-156
WP_017382378.1|329407_331171_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	87.7	3.2e-312
WP_015386365.1|331320_332148_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	67.6	9.1e-74
WP_015386366.1|332163_333312_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	68.8	2.1e-132
WP_006777754.1|333315_333969_+|terminase	Small terminase subunit	terminase	E5G6M7	Salmonella_phage	56.1	5.2e-56
WP_014884903.1|334067_334535_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	58.7	1.3e-48
WP_000868184.1|334534_334738_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_014884902.1|334741_334957_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	66.2	2.0e-20
WP_014884901.1|334937_335453_+	lysozyme	NA	E5G6N1	Salmonella_phage	76.5	1.8e-72
WP_015386367.1|335449_335878_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	84.3	1.5e-56
WP_014884898.1|335973_336405_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	89.5	3.5e-69
WP_014884897.1|336397_336844_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	81.1	2.4e-60
WP_014884896.1|336912_337491_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	96.9	8.2e-106
WP_015386368.1|337487_337847_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	89.0	1.1e-52
WP_015386369.1|337833_338742_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	90.1	4.6e-143
WP_015386370.1|338734_339340_+|tail	phage tail protein I	tail	E5G6N9	Salmonella_phage	93.5	2.3e-111
WP_015386371.1|339336_340908_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	61.6	3.5e-167
WP_015386372.1|340907_341504_+|tail	tail fiber assembly protein	tail	K7PMC4	Enterobacterial_phage	74.0	3.7e-85
WP_015386373.1|341475_341670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386374.1|342123_342711_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	85.8	1.1e-84
WP_015386375.1|342769_343522_+	site-specific DNA-methyltransferase	NA	Q775B4	Bordetella_phage	51.1	1.1e-62
WP_007848866.1|343602_344775_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	92.8	9.5e-210
WP_007848874.1|344784_345300_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	93.0	7.6e-87
WP_007848877.1|345354_345657_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	91.0	3.7e-41
WP_007848878.1|345671_345791_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	92.3	3.3e-14
WP_015386376.1|345783_349227_+|tail	phage tail tape measure protein	tail	A0A1S6L010	Salmonella_phage	71.8	0.0e+00
347625:347642	attR	GCTGGCAAATGCGCCGCT	NA	NA	NA	NA
WP_015386377.1|349226_349712_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	88.2	1.7e-72
WP_015386378.1|349708_350809_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	91.0	1.5e-180
WP_015386379.1|350878_351097_+	DNA-binding transcriptional regulator	NA	Q53ZE7	Salmonella_virus	72.2	1.6e-25
WP_004385589.1|351434_351941_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_004385590.1|351993_352416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004385591.1|352658_354503_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_004385592.1|354742_356488_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	2.4e-76
WP_001144069.1|356600_356816_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_004385593.1|357064_358078_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.2	1.5e-107
>prophage 2
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	1188240	1194568	4344092		Enterobacteria_phage(50.0%)	6	NA	NA
WP_029464222.1|1188240_1189659_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	33.2	1.6e-17
WP_007699430.1|1189830_1190721_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	40.3	5.6e-45
WP_015386515.1|1191112_1192195_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.2	4.8e-99
WP_007851126.1|1192197_1193094_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.3	1.7e-28
WP_015386516.1|1193143_1194022_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_015386517.1|1194025_1194568_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	6.4e-52
>prophage 3
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	1241209	1250198	4344092		Burkholderia_phage(33.33%)	9	NA	NA
WP_007794693.1|1241209_1241449_-	DinI family protein	NA	K7PKM2	Enterobacterial_phage	84.8	5.5e-32
WP_007851050.1|1241602_1242727_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	56.7	2.5e-106
WP_004388128.1|1243371_1244070_+	phosphohydrolase	NA	S4W232	Pandoravirus	26.3	9.6e-08
WP_032804096.1|1244196_1245564_+	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	53.2	1.4e-100
WP_007851048.1|1245547_1246045_+	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	49.0	1.2e-33
WP_004388131.1|1246048_1246960_-	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_004388132.1|1247138_1248053_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_004388133.1|1248142_1248325_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_015386531.1|1248527_1250198_+	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	38.6	1.7e-23
>prophage 4
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	1264320	1303035	4344092	portal,holin,head,terminase,protease,lysis,capsid,tail	Enterobacteria_phage(31.71%)	49	NA	NA
WP_015386532.1|1264320_1265610_-	DUF3596 domain-containing protein	NA	Q20GI2	Phage_258-320	66.2	1.9e-171
WP_015386533.1|1265644_1265902_-	excisionase family protein	NA	S4TND0	Salmonella_phage	65.8	1.5e-27
WP_015386534.1|1266226_1266634_-	hypothetical protein	NA	K7P7N0	Enterobacteria_phage	44.5	1.4e-19
WP_015386535.1|1266642_1267275_-	LexA family transcriptional regulator	NA	K7P850	Enterobacteria_phage	80.0	9.0e-98
WP_015386536.1|1267376_1267592_+	helix-turn-helix transcriptional regulator	NA	Q716D6	Shigella_phage	80.3	1.1e-23
WP_029464227.1|1267733_1268270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386538.1|1268463_1268631_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_015386539.1|1268627_1269524_+	conserved phage C-terminal domain-containing protein	NA	A0A1C9IHW0	Salmonella_phage	61.0	3.9e-38
WP_015386540.1|1269520_1269757_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_015386541.1|1269756_1270935_+	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	81.9	1.2e-103
WP_015386542.1|1270931_1271267_+	hypothetical protein	NA	U5P451	Shigella_phage	50.0	4.4e-19
WP_104677821.1|1271361_1271838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386544.1|1271919_1272303_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	78.0	9.1e-53
WP_029464228.1|1272318_1273044_+	phage antirepressor KilAC domain-containing protein	NA	G0ZND1	Cronobacter_phage	54.4	3.7e-55
WP_015386546.1|1273040_1274090_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	65.3	2.2e-133
WP_015386547.1|1274108_1274867_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	60.3	3.2e-81
WP_007747946.1|1275458_1275839_+|holin	phage holin family protein	holin	F1C592	Cronobacter_phage	97.6	4.5e-60
WP_015386548.1|1275825_1276110_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	54.3	2.9e-19
WP_015386549.1|1276106_1276730_+	glycoside hydrolase family 19 protein	NA	F1C591	Cronobacter_phage	98.1	3.4e-113
WP_015386550.1|1276729_1277194_+|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	57.1	4.7e-35
WP_015386551.1|1277716_1278073_+	HNH endonuclease	NA	A0A1B5FP94	Escherichia_phage	79.3	3.6e-51
WP_029464229.1|1278090_1278756_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_029464230.1|1278954_1279428_+|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	90.4	7.0e-79
WP_015386554.1|1279427_1281185_+|terminase	terminase large subunit	terminase	K7PKT2	Enterobacteria_phage	91.6	0.0e+00
WP_015386555.1|1281184_1282489_+|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	87.8	9.2e-222
WP_015386556.1|1282497_1283352_+|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	76.4	5.3e-117
WP_015386557.1|1283365_1284586_+|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	92.1	1.1e-203
WP_015386558.1|1284637_1284820_+	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	89.5	7.4e-13
WP_012124230.1|1284829_1285156_+|head,tail	phage head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	51.9	1.1e-25
WP_012124231.1|1285152_1285494_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_015386559.1|1285490_1285940_+	HK97 gp10 family phage protein	NA	Q9MCS9	Enterobacteria_phage	86.6	5.0e-66
WP_015386560.1|1285936_1286266_+	DUF3168 domain-containing protein	NA	A0A1P8DTJ3	Proteus_phage	52.7	1.1e-22
WP_015386561.1|1286326_1286782_+	hypothetical protein	NA	A0A1W6JP06	Morganella_phage	75.7	3.6e-56
WP_015386562.1|1286832_1287228_+|tail	phage tail assembly chaperone	tail	F1C576	Cronobacter_phage	87.0	3.7e-57
WP_029464231.1|1287251_1287521_+	DUF4035 domain-containing protein	NA	K7PLY6	Enterobacterial_phage	60.9	1.0e-21
WP_029464232.1|1287610_1288126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386565.1|1288127_1288445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029464233.1|1288503_1292013_+|tail	phage tail tape measure protein	tail	F1C575	Cronobacter_phage	57.0	1.2e-252
WP_012124240.1|1292058_1292397_+|tail	phage tail protein	tail	K7PKL8	Enterobacterial_phage	61.6	1.6e-37
WP_015386567.1|1292403_1293156_+|tail	phage minor tail protein L	tail	F1C574	Cronobacter_phage	99.6	8.1e-146
WP_015386568.1|1293158_1293863_+	C40 family peptidase	NA	F1C573	Cronobacter_phage	97.9	9.6e-141
WP_015386569.1|1293859_1294456_+|tail	tail assembly protein	tail	F1C572	Cronobacter_phage	84.6	1.3e-85
WP_015386570.1|1294505_1297667_+	host specificity protein J	NA	F1C571	Cronobacter_phage	98.5	0.0e+00
WP_029464234.1|1297666_1297957_+	hypothetical protein	NA	A0A192Y8D4	Enterobacteria_phage	36.4	9.8e-07
WP_015386571.1|1298049_1298613_+	hypothetical protein	NA	F1C570	Cronobacter_phage	55.9	9.9e-56
WP_015386572.1|1298650_1300105_+|tail	tail fiber domain-containing protein	tail	F1C569	Cronobacter_phage	97.7	3.6e-267
WP_014728470.1|1300246_1300684_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	F1C5A6	Cronobacter_phage	100.0	9.4e-78
WP_015386573.1|1300667_1301930_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	98.3	6.0e-242
WP_015386574.1|1302123_1303035_-	restriction endonuclease	NA	Q858R6	Enterobacteria_phage	90.8	2.9e-166
>prophage 5
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	1619922	1681742	4344092	tRNA,portal,holin,terminase,protease,plate,capsid,head,tail	Salmonella_phage(40.48%)	70	NA	NA
WP_015386638.1|1619922_1621206_-	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	58.4	6.0e-149
WP_015386639.1|1621231_1621483_-	excisionase family protein	NA	S4TND0	Salmonella_phage	47.4	2.0e-16
WP_041460983.1|1621563_1622664_-	AAA family ATPase	NA	I6PCV5	Cronobacter_phage	92.3	1.1e-199
WP_029464250.1|1622665_1622956_-	hypothetical protein	NA	I6PDJ2	Cronobacter_phage	71.6	6.1e-33
WP_015386643.1|1623442_1623850_-	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	43.1	2.1e-23
WP_015386644.1|1623928_1624168_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_015386645.1|1624167_1624620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386646.1|1624643_1625528_+	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	40.5	2.9e-54
WP_015386647.1|1625724_1626561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386648.1|1626562_1628797_-	AAA family ATPase	NA	Q7Y4B3	Escherichia_virus	25.5	3.3e-09
WP_015386650.1|1629705_1630161_+	recombination protein NinB	NA	I6PD71	Cronobacter_phage	86.8	2.0e-75
WP_015386651.1|1630163_1630364_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	63.1	2.2e-18
WP_015386652.1|1630354_1630651_+	hypothetical protein	NA	A0A0M3ULJ7	Salmonella_phage	73.9	3.4e-31
WP_015386653.1|1630647_1631010_+	RusA family crossover junction endodeoxyribonuclease	NA	I6PBN1	Cronobacter_phage	87.5	9.2e-55
WP_015386654.1|1631006_1631702_+	hypothetical protein	NA	I6PDF8	Cronobacter_phage	66.2	9.7e-77
WP_015386655.1|1631835_1632066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007749455.1|1632817_1633033_+|holin	class II holin family protein	holin	A5LH82	Enterobacteria_phage	83.1	1.1e-28
WP_015386656.1|1633032_1633518_+	lysozyme	NA	A0A2H4FND7	Salmonella_phage	72.3	7.7e-65
WP_015386657.1|1633517_1633868_+	hypothetical protein	NA	S4TW58	Salmonella_phage	31.8	2.2e-05
WP_015386661.1|1635500_1635758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386662.1|1636372_1636732_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	63.5	8.6e-37
WP_015386663.1|1636897_1637326_+|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	57.5	4.6e-29
WP_015386664.1|1637329_1639057_+|terminase	terminase large subunit	terminase	Q8W631	Enterobacteria_phage	60.3	3.2e-206
WP_007793902.1|1639202_1640444_+|portal	phage portal protein	portal	A0A1W6JP33	Morganella_phage	71.5	1.8e-174
WP_012124620.1|1640436_1641060_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	82.7	9.3e-79
WP_015386665.1|1641129_1642350_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	64.5	2.1e-143
WP_015386666.1|1642355_1642622_+	Ig domain-containing protein	NA	X4YE12	Lactococcus_phage	50.0	8.1e-08
WP_012124623.1|1642656_1642974_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	59.8	3.1e-30
WP_012124624.1|1642970_1643366_+|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	53.5	1.3e-30
WP_015386667.1|1643358_1643877_+	hypothetical protein	NA	A0A192Y6D2	Salmonella_phage	72.8	1.2e-66
WP_007793890.1|1643873_1644434_+	hypothetical protein	NA	Q8HAC7	Salmonella_phage	58.1	3.1e-57
WP_015386668.1|1644439_1644604_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	63.5	3.3e-12
WP_015386669.1|1644593_1646435_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	Q8W623	Enterobacteria_phage	53.6	2.6e-169
WP_007668785.1|1646427_1646784_+|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	77.1	1.1e-49
WP_007793886.1|1646780_1647107_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	63.0	2.9e-31
WP_015386670.1|1647194_1649120_+|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	56.6	1.4e-202
WP_015386671.1|1649155_1650475_+	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	62.1	1.6e-152
WP_015386672.1|1650471_1651530_+|tail	phage tail protein	tail	A0A192Y7L7	Salmonella_phage	67.3	4.2e-132
WP_015386673.1|1651529_1652114_+|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	47.2	3.2e-33
WP_015386674.1|1652117_1652534_+	phage GP46 family protein	NA	A0A192Y6D0	Salmonella_phage	62.3	3.8e-44
WP_015386675.1|1652526_1653930_+|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	60.8	4.4e-121
WP_012124627.1|1653920_1654493_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	60.5	5.2e-60
WP_015386676.1|1654550_1655774_+	hypothetical protein	NA	Q8W613	Enterobacteria_phage	33.9	1.0e-28
WP_015386677.1|1655779_1656211_+|tail	tail assembly chaperone	tail	A0A1S6KZY8	Salmonella_phage	39.8	3.1e-17
WP_015386678.1|1656387_1656675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015386679.1|1656916_1657243_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
WP_015386682.1|1658822_1661066_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
WP_015386683.1|1661062_1661740_+	beta-phosphoglucomutase	NA	NA	NA	NA	NA
WP_004387301.1|1661755_1662838_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.0	1.0e-08
WP_004387302.1|1662887_1663880_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_029464254.1|1664045_1665443_+	YcjX family protein	NA	NA	NA	NA	NA
WP_004387304.1|1665439_1666483_+	TIGR01620 family protein	NA	NA	NA	NA	NA
WP_015386684.1|1666631_1668194_+	transcriptional regulator TyrR	NA	NA	NA	NA	NA
WP_004387306.1|1668245_1668752_-	thiol peroxidase	NA	NA	NA	NA	NA
WP_004387307.1|1668888_1669887_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA	NA
WP_015386685.1|1669868_1670591_-	murein tripeptide amidase MpaA	NA	NA	NA	NA	NA
WP_004387310.1|1670835_1672452_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004387311.1|1672512_1672953_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_170921726.1|1673070_1673406_-	anti-adapter protein IraM	NA	NA	NA	NA	NA
WP_004387313.1|1673892_1674474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004387314.1|1674714_1674969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004387315.1|1675115_1675355_-	general stress protein	NA	NA	NA	NA	NA
WP_004387316.1|1676077_1677829_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_004387317.1|1678030_1678222_-	hypothetical protein	NA	I6S5X8	Salmonella_phage	46.6	2.9e-07
WP_004387318.1|1678295_1678619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004387319.1|1678820_1678994_+	GhoT/OrtT family toxin	NA	NA	NA	NA	NA
WP_004387320.1|1679072_1679276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004387321.1|1679315_1680299_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_004387322.1|1680620_1680770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004387323.1|1680809_1681742_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	93.8	7.5e-141
>prophage 6
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	2094391	2104589	4344092	tRNA	Bacillus_phage(14.29%)	12	NA	NA
WP_004387814.1|2094391_2094856_-	C40 family peptidase	NA	S5MM68	Bacillus_phage	36.0	1.0e-10
WP_085960040.1|2094933_2095677_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	28.0	4.1e-09
WP_004387815.1|2095679_2096231_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_029464079.1|2096260_2097262_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
WP_004387086.1|2097339_2097639_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_004387087.1|2097643_2100031_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	27.1	9.5e-07
WP_007867262.1|2100046_2101030_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	42.6	6.4e-34
WP_124752678.1|2101249_2101444_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_000124849.1|2101415_2101772_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001124225.1|2101819_2102017_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_012905609.1|2102114_2102657_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.3	1.1e-14
WP_004387090.1|2102660_2104589_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.1e-130
>prophage 7
NC_020260	Cronobacter sakazakii SP291, complete sequence	4344092	2471983	2502383	4344092	holin,portal,integrase,terminase,plate,capsid,head,tail	Cronobacter_phage(83.87%)	38	2492903:2492918	2510001:2510016
WP_015386831.1|2471983_2473684_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	99.6	7.2e-267
WP_015386832.1|2473686_2474235_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	94.5	2.4e-86
WP_015386833.1|2474206_2474932_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	98.8	1.8e-105
WP_041461001.1|2474921_2475437_-|tail	tail fiber assembly protein	tail	F1BUK2	Cronobacter_phage	99.4	2.1e-92
WP_015386836.1|2477421_2478009_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	100.0	1.9e-110
WP_015386837.1|2478001_2479186_-|plate	baseplate J/gp47 family protein	plate	F1BUK6	Cronobacter_phage	100.0	2.4e-221
WP_007710803.1|2479182_2479509_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	100.0	2.8e-55
WP_015386838.1|2479508_2481569_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	99.9	0.0e+00
WP_007710810.1|2481756_2482014_-|tail	putative phage tail assembly chaperone	tail	A5X9I7	Aeromonas_virus	64.6	1.2e-21
WP_015386839.1|2482160_2482493_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	94.5	1.4e-49
WP_015386840.1|2482492_2482834_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	99.0	2.5e-54
WP_015386841.1|2482834_2483128_-|holin	phage holin family protein	holin	C7BGD7	Burkholderia_phage	51.8	1.1e-16
WP_015386842.1|2483137_2483593_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	100.0	2.2e-82
WP_015386843.1|2483589_2484717_-	DUF2586 family protein	NA	F1BUL5	Cronobacter_phage	98.9	5.0e-208
WP_015386844.1|2484713_2485421_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	100.0	5.0e-129
WP_015386845.1|2485420_2485921_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	100.0	6.5e-91
WP_015386846.1|2485917_2486370_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	98.7	2.4e-76
WP_015386847.1|2486466_2487165_-|terminase	terminase endonuclease subunit from bacteriophage origin	terminase	F1BUM0	Cronobacter_phage	96.6	4.3e-125
WP_015386848.1|2487168_2488191_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	100.0	4.1e-193
WP_015386849.1|2488251_2489076_-|capsid	GPO family capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	96.0	4.0e-154
WP_015386850.1|2489240_2491019_+	hypothetical protein	NA	F1BUM5	Cronobacter_phage	98.6	0.0e+00
WP_015386851.1|2491015_2492056_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	99.1	2.0e-198
WP_015386852.1|2492106_2492376_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	100.0	2.1e-43
WP_054622748.1|2492349_2492562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386853.1|2492678_2494697_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	99.4	0.0e+00
2492903:2492918	attL	CTGCGCCGCCAGAAAA	NA	NA	NA	NA
WP_015386854.1|2494693_2495557_-	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	99.3	1.9e-159
WP_015386855.1|2495553_2495796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386856.1|2495786_2496020_-	DUF2732 family protein	NA	NA	NA	NA	NA
WP_015386857.1|2496086_2496488_-	hypothetical protein	NA	F1BUN2	Cronobacter_phage	96.2	1.3e-70
WP_041461003.1|2496491_2496803_-	hypothetical protein	NA	F1BUN5	Cronobacter_phage	89.3	7.2e-48
WP_015386859.1|2496900_2497092_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_015386860.1|2497102_2497606_-	phage regulatory CII family protein	NA	F1BUN6	Cronobacter_phage	93.4	1.5e-79
WP_015386861.1|2497636_2497858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041461004.1|2497991_2498573_+	phage repressor protein CI	NA	F1BUS8	Erwinia_phage	41.9	1.9e-33
WP_015386863.1|2498573_2499614_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	60.5	2.2e-117
WP_007848577.1|2499780_2499915_+	manganase accumulation protein MntS	NA	NA	NA	NA	NA
WP_007848572.1|2500207_2501791_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_004388453.1|2501870_2502383_-	outer membrane protein OmpX	NA	A0A0P0ZE39	Stx2-converting_phage	36.6	3.0e-19
2510001:2510016	attR	TTTTCTGGCGGCGCAG	NA	NA	NA	NA
>prophage 1
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	0	13269	118136	protease	Bacillus_phage(100.0%)	14	NA	NA
WP_007854347.1|955_1573_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_015387222.1|1671_2439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015387223.1|2562_3621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007854372.1|3625_4156_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_015387224.1|4445_5654_+	MFS transporter	NA	NA	NA	NA	NA
WP_007854376.1|5969_6908_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_011998928.1|7156_7699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015387225.1|7695_8235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029463994.1|8266_8962_+	YafY family transcriptional regulator	NA	NA	NA	NA	NA
WP_007854381.1|9018_9402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007854382.1|9454_10345_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_015387227.1|10506_11277_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_007854387.1|11401_12094_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.2	1.2e-26
WP_015387228.1|12090_13269_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.7	2.3e-17
>prophage 2
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	20992	22300	118136		Burkholderia_virus(100.0%)	1	NA	NA
WP_007873133.1|20992_22300_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	37.0	4.6e-64
>prophage 3
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	29224	39841	118136		Enterobacteria_phage(20.0%)	12	NA	NA
WP_007873161.1|29224_29968_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	48.2	1.1e-46
WP_015387237.1|30046_31957_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-14
WP_007854473.1|32389_32776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007854475.1|32812_33328_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_015387238.1|33429_33753_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_007854481.1|33745_34144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029463991.1|34116_34842_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007854483.1|34923_35745_+	alpha/beta hydrolase	NA	A0A220NRX7	Mycobacterium_phage	29.3	3.6e-14
WP_007854484.1|35791_37168_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_015387240.1|37445_38645_+	hypothetical protein	NA	Q6A202	Oenococcus_phage	28.1	3.4e-37
WP_007854485.1|38632_39352_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007780690.1|39547_39841_-	NINE protein	NA	M4ZS56	Bacillus_phage	68.8	3.6e-17
>prophage 4
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	46933	52394	118136		uncultured_Caudovirales_phage(75.0%)	6	NA	NA
WP_007854508.1|46933_47338_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	69.9	1.8e-46
WP_007854509.1|47381_48665_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	72.1	5.2e-169
WP_029463989.1|48752_49088_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	61.9	1.6e-24
WP_015387245.1|49177_50065_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_015387246.1|50089_50968_-	DMT family transporter	NA	NA	NA	NA	NA
WP_015387247.1|51059_52394_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.2	1.3e-13
>prophage 5
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	61893	62652	118136		Indivirus(100.0%)	1	NA	NA
WP_015387256.1|61893_62652_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.9	2.6e-14
>prophage 6
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	67463	68441	118136	integrase	Gordonia_phage(100.0%)	1	58151:58165	78448:78462
58151:58165	attL	CCGCCGTGGCGAGCC	NA	NA	NA	NA
WP_104669226.1|67463_68441_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	37.9	1.1e-12
WP_104669226.1|67463_68441_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	37.9	1.1e-12
78448:78462	attR	GGCTCGCCACGGCGG	NA	NA	NA	NA
>prophage 7
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	76586	78245	118136		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_015387264.1|76586_78245_-	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.9	1.1e-09
>prophage 8
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	82510	84457	118136		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_029463999.1|82510_84457_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.3	1.1e-13
>prophage 9
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	87625	90340	118136		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_029463997.1|87625_90340_-	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	24.6	5.0e-36
>prophage 10
NC_020263	Cronobacter sakazakii SP291 plasmid pSP291-1, complete sequence	118136	114686	116862	118136		Escherichia_phage(100.0%)	2	NA	NA
WP_015387283.1|114686_115655_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	56.9	8.1e-90
WP_032803578.1|115662_116862_-	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	78.3	5.2e-179
