assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000336405.1_ASM33640v1	NC_020207	Enterococcus faecium ATCC 8459 = NRRL B-2354, complete sequence	1	2272332-2272441	1	CRISPRCasFinder	no		cas3,RT,DEDDh,csa3,DinG,cas2,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,cas2,cas14j	NA,NA	NA|720aa|up_9|NC_020207.1_2260919_2263079_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NC_020207.1_2263128_2264094_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NC_020207.1_2264182_2265322_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NC_020207.1_2265630_2266344_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NC_020207.1_2266597_2267299_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NC_020207.1_2267532_2269065_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NC_020207.1_2269255_2270458_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NC_020207.1_2270539_2271229_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NC_020207.1_2271334_2271703_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NC_020207.1_2271755_2272259_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NC_020207.1_2272668_2273358_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NC_020207.1_2273461_2273884_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NC_020207.1_2274226_2274895_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NC_020207.1_2274907_2275780_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NC_020207.1_2275870_2276890_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|302aa|down_5|NC_020207.1_2277062_2277968_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NC_020207.1_2278026_2278572_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NC_020207.1_2278672_2278843_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NC_020207.1_2278866_2279019_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NC_020207.1_2279180_2279825_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_000336405.1_ASM33640v1	NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	1	6829-6905	1	CRISPRCasFinder	no		csa3,DEDDh	Orphan	CTCATACTAGTATCACTATCTTCGTC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,DinG,cas2,cas14j	NA|110aa|up_5|NC_020208.1_521_851_-,NA|309aa|up_2|NC_020208.1_1568_2495_-,NA|306aa|down_2|NC_020208.1_9586_10504_-,NA|69aa|down_5|NC_020208.1_12820_13027_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|96aa|up_6|NC_020208.1_244_532_-	pfam15781, ParE-like_toxin, ParE-like toxin of type II bacterial toxin-antitoxin system	NA|110aa|up_5|NC_020208.1_521_851_-	NA	NA|91aa|up_4|NC_020208.1_927_1200_-	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|88aa|up_3|NC_020208.1_1199_1463_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|309aa|up_2|NC_020208.1_1568_2495_-	NA	NA|75aa|up_1|NC_020208.1_4194_4419_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|376aa|up_0|NC_020208.1_4445_5572_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|69aa|down_0|NC_020208.1_7669_7876_-	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|393aa|down_1|NC_020208.1_8308_9487_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|306aa|down_2|NC_020208.1_9586_10504_-	NA	NA|431aa|down_3|NC_020208.1_10643_11936_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|199aa|down_4|NC_020208.1_12203_12800_-	pfam07563, DUF1541, Protein of unknown function (DUF1541)	NA|69aa|down_5|NC_020208.1_12820_13027_-	NA	NA|465aa|down_6|NC_020208.1_13041_14436_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|227aa|down_7|NC_020208.1_14435_15116_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|528aa|down_8|NC_020208.1_15143_16727_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|75aa|down_9|NC_020208.1_16737_16962_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones
GCF_000336405.1_ASM33640v1	NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	2	61630-61757	2	CRISPRCasFinder	no		csa3,DEDDh	Orphan	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,DEDDh,csa3,DinG,cas2,cas14j	NA|182aa|up_5|NC_020208.1_54933_55479_+,NA|65aa|up_0|NC_020208.1_59654_59849_-,NA|111aa|down_0|NC_020208.1_63064_63397_+,NA|80aa|down_2|NC_020208.1_64470_64710_+,NA|70aa|down_3|NC_020208.1_64776_64986_+,NA|252aa|down_7|NC_020208.1_68528_69284_+,NA|87aa|down_8|NC_020208.1_69296_69557_+	NA|225aa|up_9|NC_020208.1_50427_51102_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|135aa|up_8|NC_020208.1_51303_51708_-	pfam14478, DUF4430, Domain of unknown function (DUF4430)	NA|188aa|up_7|NC_020208.1_51723_52287_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|828aa|up_6|NC_020208.1_52300_54784_-	PRK08115, PRK08115, vitamin B12-dependent ribonucleotide reductase	NA|182aa|up_5|NC_020208.1_54933_55479_+	NA	NA|318aa|up_4|NC_020208.1_56149_57103_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|227aa|up_3|NC_020208.1_57188_57869_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NC_020208.1_58338_58656_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|85aa|up_1|NC_020208.1_58656_58911_-	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|65aa|up_0|NC_020208.1_59654_59849_-	NA	NA|111aa|down_0|NC_020208.1_63064_63397_+	NA	NA|114aa|down_1|NC_020208.1_64015_64357_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|80aa|down_2|NC_020208.1_64470_64710_+	NA	NA|70aa|down_3|NC_020208.1_64776_64986_+	NA	NA|224aa|down_4|NC_020208.1_65045_65717_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|659aa|down_5|NC_020208.1_65769_67746_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|251aa|down_6|NC_020208.1_67760_68513_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|252aa|down_7|NC_020208.1_68528_69284_+	NA	NA|87aa|down_8|NC_020208.1_69296_69557_+	NA	NA|697aa|down_9|NC_020208.1_69553_71644_+	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain
