The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020207	Enterococcus faecium ATCC 8459 = NRRL B-2354, complete sequence	2635572	879277	940785	2635572	transposase,tRNA,integrase	Lactobacillus_phage(17.65%)	52	873167:873184	919504:919521
873167:873184	attL	AAGAGGTTGTGAAATCAG	NA	NA	NA	NA
WP_002301945.1|879277_880576_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.5	6.9e-60
WP_002301946.1|881504_882179_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_010738823.1|882175_882517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288776.1|882546_882906_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002301949.1|883430_885512_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.7	8.3e-116
WP_002288779.1|885822_887289_+	amino acid permease	NA	NA	NA	NA	NA
WP_002323435.1|887903_888440_+	hypothetical protein	NA	A0A097BYE2	Leuconostoc_phage	34.8	9.9e-21
WP_002294855.1|888517_888958_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_002289040.1|888970_889180_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002323434.1|889179_891366_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.5	4.1e-121
WP_010721450.1|891385_893557_+	copper/silver-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	32.5	2.2e-71
WP_002323432.1|893668_895840_-	transglutaminase	NA	NA	NA	NA	NA
WP_002323431.1|895829_896903_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_002304700.1|896916_897765_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_002294835.1|899481_900051_+	prevent-host-death protein	NA	NA	NA	NA	NA
WP_002294833.1|900226_900493_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	58.7	2.8e-08
WP_002294831.1|900487_901180_+	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	43.4	2.3e-30
WP_086956687.1|901747_902910_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002295273.1|903463_903721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295271.1|903883_904858_+	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002322761.1|905587_905905_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002289810.1|906108_906474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302564.1|906681_907164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289807.1|907360_908251_+	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_010728667.1|908576_911051_+	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.2	1.7e-46
WP_002293703.1|911153_912890_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.3e-28
WP_002293705.1|912886_913591_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002297194.1|913721_914225_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293708.1|914184_914523_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002293709.1|914543_915962_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010738821.1|916073_916652_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002293712.1|916603_917176_+	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293714.1|917254_917809_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002290274.1|918061_918337_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010728670.1|918348_918600_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002325027.1|918723_919515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293716.1|919684_920206_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
919504:919521	attR	AAGAGGTTGTGAAATCAG	NA	NA	NA	NA
WP_010738820.1|920195_920957_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002286913.1|921092_921440_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002334039.1|922653_923334_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	4.5e-127
WP_002292418.1|926983_927856_-	ROK family protein	NA	NA	NA	NA	NA
WP_002293868.1|928119_930066_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002293865.1|930250_931690_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
WP_002302077.1|931691_932654_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_104841954.1|932823_934250_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	39.8	3.0e-48
WP_002295182.1|934492_934948_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	38.2	4.3e-17
WP_002289255.1|935533_935764_-	resolvase	NA	NA	NA	NA	NA
WP_002289254.1|935993_936812_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289253.1|936972_937662_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002295185.1|937675_939178_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002295186.1|939190_939667_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010738816.1|939825_940785_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_020207	Enterococcus faecium ATCC 8459 = NRRL B-2354, complete sequence	2635572	958471	968287	2635572	tRNA	Streptococcus_phage(50.0%)	9	NA	NA
WP_002293942.1|958471_959188_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002293941.1|959187_960636_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	2.3e-19
WP_002288586.1|960705_961215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297641.1|961204_961930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293938.1|962152_964273_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.3	3.7e-220
WP_002293936.1|964502_965681_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.2	7.8e-103
WP_002293935.1|965696_966455_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	8.5e-26
WP_002288577.1|966477_966963_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002293934.1|967033_968287_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	4.5e-24
>prophage 3
NC_020207	Enterococcus faecium ATCC 8459 = NRRL B-2354, complete sequence	2635572	1150114	1201553	2635572	terminase,tRNA,portal,integrase,tail,holin,transposase,plate	Lactobacillus_phage(21.88%)	63	1155561:1155575	1173798:1173812
WP_002300656.1|1150114_1150816_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002288338.1|1150812_1151934_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002288340.1|1151948_1153181_+	peptidase T	NA	NA	NA	NA	NA
WP_002300651.1|1153312_1154221_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_002330119.1|1154255_1154528_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002300648.1|1154538_1155585_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
1155561:1155575	attL	AGAGAATAAAGAAAA	NA	NA	NA	NA
WP_002322596.1|1155600_1157025_-|transposase	IS1182-like element ISEfa12 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.7	4.4e-124
WP_002301554.1|1157374_1159984_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
WP_002323661.1|1160130_1160817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301556.1|1160794_1161289_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	3.2e-42
WP_010738797.1|1161308_1162529_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002301558.1|1162675_1164511_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.6	1.5e-20
WP_010738796.1|1164603_1165740_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.1	1.7e-115
WP_010738795.1|1165936_1166545_-	Ltp family lipoprotein	NA	NA	NA	NA	NA
WP_010738793.1|1166846_1167473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738792.1|1167493_1167922_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_010738791.1|1167927_1168320_-	helix-turn-helix transcriptional regulator	NA	O03970	Lactobacillus_phage	36.2	2.7e-15
WP_002309076.1|1168458_1168713_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002319160.1|1168709_1168862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002309080.1|1168925_1169471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002309082.1|1169467_1169755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002319163.1|1169751_1169937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738790.1|1170073_1171015_+	YqaJ viral recombinase family protein	NA	D2IZK1	Enterococcus_phage	78.0	1.8e-142
WP_010738788.1|1171136_1172027_+	recombinase RecT	NA	D2IYT9	Enterococcus_phage	84.5	1.4e-136
WP_010738787.1|1172075_1172966_+	DnaD domain protein	NA	NA	NA	NA	NA
WP_002324927.1|1172958_1173318_+	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	47.5	2.4e-18
WP_010738786.1|1173332_1173494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033795079.1|1173711_1173996_+	DUF658 family protein	NA	NA	NA	NA	NA
1173798:1173812	attR	AGAGAATAAAGAAAA	NA	NA	NA	NA
WP_010738783.1|1173995_1174313_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.0	7.9e-10
WP_010738782.1|1174313_1174532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738781.1|1174531_1174828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738780.1|1174903_1175317_+	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_010738779.1|1175662_1176037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738778.1|1176234_1176465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738777.1|1176466_1177666_+	DNA modification methylase	NA	A0A1B0RXE5	Streptococcus_phage	50.0	5.2e-102
WP_010738776.1|1177801_1178011_+	hypothetical protein	NA	A8ATN7	Listeria_phage	60.9	1.2e-11
WP_010738775.1|1178226_1178913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738774.1|1178958_1179813_+	hypothetical protein	NA	D2IYW0	Enterococcus_phage	70.7	4.4e-71
WP_010738773.1|1179778_1181104_+|terminase	PBSX family phage terminase large subunit	terminase	A4L7R3	Lactococcus_phage	59.0	1.8e-156
WP_010738772.1|1181097_1182657_+|portal	phage portal protein	portal	O03928	Lactobacillus_phage	55.4	3.0e-150
WP_010738771.1|1182658_1183795_+	hypothetical protein	NA	O03929	Lactobacillus_phage	53.1	6.4e-86
WP_010738770.1|1183880_1184459_+	phage scaffolding protein	NA	Q9T1B8	Listeria_phage	50.7	1.8e-28
WP_010738769.1|1184478_1185441_+	hypothetical protein	NA	Q20DD4	Lactobacillus_phage	56.9	1.2e-85
WP_045172267.1|1185430_1185787_+	fibronectin type III domain-containing protein	NA	D2J067	Enterococcus_phage	47.8	1.7e-24
WP_010738767.1|1185786_1186146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738766.1|1186150_1186552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738765.1|1186548_1186896_+	hypothetical protein	NA	O03932	Lactobacillus_phage	50.4	6.0e-27
WP_010738764.1|1186895_1187246_+	hypothetical protein	NA	U3PIU9	Lactobacillus_phage	44.0	2.1e-16
WP_010738763.1|1187245_1187635_+	hypothetical protein	NA	Q5YA65	Bacillus_phage	41.9	1.8e-27
WP_033795094.1|1187685_1188189_+	hypothetical protein	NA	O03972	Lactobacillus_phage	63.7	3.7e-46
WP_049802298.1|1188143_1188446_+	Ig domain-containing protein	NA	A0A1P8BL30	Lactococcus_phage	61.4	5.9e-15
WP_002300157.1|1188515_1188956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738761.1|1188961_1189582_+	hypothetical protein	NA	I1TLF0	Bacillus_phage	27.5	3.7e-11
WP_015371010.1|1189600_1194232_+	tape measure protein	NA	A0A2P0VJB7	Streptococcus_phage	38.2	2.6e-85
WP_010738683.1|1194224_1195052_+|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	38.3	1.6e-46
WP_010738684.1|1195060_1196080_+|tail	phage tail protein	tail	Q9T1A5	Listeria_phage	53.8	2.8e-101
WP_010738685.1|1196080_1197130_+	hypothetical protein	NA	A0A059T661	Listeria_phage	33.5	1.2e-17
WP_010738686.1|1197129_1199382_+|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	42.3	1.7e-69
WP_010738687.1|1199400_1199847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002327992.1|1199848_1199986_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002327993.1|1200022_1200316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002327994.1|1200312_1200537_+|holin	phage holin	holin	NA	NA	NA	NA
WP_002334522.1|1200533_1201553_+	peptidoglycan recognition protein	NA	A0A1G5SA77	Enterococcus_phage	67.2	3.7e-61
>prophage 4
NC_020207	Enterococcus faecium ATCC 8459 = NRRL B-2354, complete sequence	2635572	1866331	1924864	2635572	protease,terminase,portal,tail,integrase,holin,plate	Enterococcus_phage(22.22%)	76	1912198:1912213	1925976:1925991
WP_002296628.1|1866331_1867171_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002330168.1|1867389_1868244_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_002323639.1|1868814_1869510_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.0	6.8e-22
WP_002319298.1|1869493_1869892_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002319296.1|1870923_1871478_-	PTS glucitol/sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002299268.1|1871465_1871957_-	transcriptional regulator GutM	NA	NA	NA	NA	NA
WP_002299273.1|1873834_1874635_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.0e-09
WP_002289418.1|1874858_1875074_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002330164.1|1875212_1875698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299276.1|1876153_1876567_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002323081.1|1877862_1878654_+	membrane protein	NA	NA	NA	NA	NA
WP_002323082.1|1878825_1879218_+	VOC family protein	NA	NA	NA	NA	NA
WP_086272838.1|1879297_1880083_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_002323084.1|1880066_1880222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330163.1|1880222_1880906_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
WP_002324895.1|1880883_1881237_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002293041.1|1881515_1881713_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	3.9e-23
WP_002323043.1|1881975_1882191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322938.1|1882721_1882901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322940.1|1883321_1883624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002309144.1|1885183_1885375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293041.1|1886731_1886929_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	3.9e-23
WP_002337184.1|1887467_1887908_+	hypothetical protein	NA	A0A249XZQ6	Enterococcus_phage	29.1	4.2e-09
WP_010738690.1|1887888_1888041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738689.1|1888037_1889012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738688.1|1889044_1890064_-	peptidoglycan recognition protein	NA	A0A1G5SA77	Enterococcus_phage	66.7	3.7e-61
WP_002327994.1|1890060_1890285_-|holin	phage holin	holin	NA	NA	NA	NA
WP_002327993.1|1890281_1890575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002327992.1|1890611_1890749_-	XkdX family protein	NA	NA	NA	NA	NA
WP_010738687.1|1890750_1891197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738686.1|1891215_1893468_-|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	42.3	1.7e-69
WP_010738685.1|1893467_1894517_-	hypothetical protein	NA	A0A059T661	Listeria_phage	33.5	1.2e-17
WP_010738684.1|1894517_1895537_-|tail	phage tail protein	tail	Q9T1A5	Listeria_phage	53.8	2.8e-101
WP_010738683.1|1895545_1896373_-|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	38.3	1.6e-46
WP_015371010.1|1896365_1900997_-	tape measure protein	NA	A0A2P0VJB7	Streptococcus_phage	38.2	2.6e-85
WP_010738761.1|1901015_1901636_-	hypothetical protein	NA	I1TLF0	Bacillus_phage	27.5	3.7e-11
WP_002300157.1|1901641_1902082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049802298.1|1902151_1902454_-	Ig domain-containing protein	NA	A0A1P8BL30	Lactococcus_phage	61.4	5.9e-15
WP_033795094.1|1902408_1902912_-	hypothetical protein	NA	O03972	Lactobacillus_phage	63.7	3.7e-46
WP_010738763.1|1902962_1903352_-	hypothetical protein	NA	Q5YA65	Bacillus_phage	41.9	1.8e-27
WP_010738764.1|1903351_1903702_-	hypothetical protein	NA	U3PIU9	Lactobacillus_phage	44.0	2.1e-16
WP_010738765.1|1903701_1904049_-	hypothetical protein	NA	O03932	Lactobacillus_phage	50.4	6.0e-27
WP_010738766.1|1904045_1904447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738767.1|1904451_1904811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045172267.1|1904810_1905167_-	fibronectin type III domain-containing protein	NA	D2J067	Enterococcus_phage	47.8	1.7e-24
WP_010738769.1|1905156_1906119_-	hypothetical protein	NA	Q20DD4	Lactobacillus_phage	56.9	1.2e-85
WP_010738770.1|1906138_1906717_-	phage scaffolding protein	NA	Q9T1B8	Listeria_phage	50.7	1.8e-28
WP_010738771.1|1906802_1907939_-	hypothetical protein	NA	O03929	Lactobacillus_phage	53.1	6.4e-86
WP_010738772.1|1907940_1909500_-|portal	phage portal protein	portal	O03928	Lactobacillus_phage	55.4	3.0e-150
WP_010738773.1|1909493_1910819_-|terminase	PBSX family phage terminase large subunit	terminase	A4L7R3	Lactococcus_phage	59.0	1.8e-156
WP_010738774.1|1910784_1911639_-	hypothetical protein	NA	D2IYW0	Enterococcus_phage	70.7	4.4e-71
1912198:1912213	attL	AATTACCAGTTTGCTT	NA	NA	NA	NA
WP_010738778.1|1912358_1912589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738779.1|1912786_1913161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738780.1|1913506_1913920_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_010738781.1|1913995_1914292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738782.1|1914291_1914510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010738855.1|1914510_1914828_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.0	6.0e-10
WP_010728481.1|1914827_1915127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319167.1|1915129_1915291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010728482.1|1915305_1915665_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	47.5	2.4e-18
WP_010728483.1|1915661_1916513_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	8.1e-25
WP_010728484.1|1916529_1917363_-	phage replisome organizer N-terminal domain-containing protein	NA	J7KBV5	Streptococcus_phage	75.4	1.7e-48
WP_010738856.1|1917369_1918056_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	2.2e-89
WP_010738857.1|1918061_1918733_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.8	5.5e-29
WP_002347915.1|1918725_1919067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347913.1|1919245_1919971_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	35.4	1.5e-27
WP_002315385.1|1920007_1920181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002315386.1|1920184_1920355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317757.1|1920359_1920680_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002347912.1|1920692_1920878_-	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	53.3	3.2e-11
WP_010728487.1|1921164_1921539_+	helix-turn-helix transcriptional regulator	NA	A0A2P0ZLA1	Lactobacillus_phage	43.0	1.3e-19
WP_025480665.1|1921543_1921972_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_010728489.1|1922021_1922675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738858.1|1922812_1923301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010728491.1|1923324_1923615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010728492.1|1923724_1924864_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	46.8	2.6e-95
1925976:1925991	attR	AAGCAAACTGGTAATT	NA	NA	NA	NA
>prophage 5
NC_020207	Enterococcus faecium ATCC 8459 = NRRL B-2354, complete sequence	2635572	1994535	2003007	2635572		Streptococcus_phage(66.67%)	9	NA	NA
WP_002288083.1|1994535_1996725_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
WP_002288081.1|1997039_1997642_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002294035.1|1997695_1998817_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288078.1|1998925_1999798_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002288076.1|1999866_2000214_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288073.1|2000206_2001031_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288071.1|2001066_2002005_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002292340.1|2002018_2002348_-	cyclic-di-AMP receptor	NA	NA	NA	NA	NA
WP_002294039.1|2002362_2003007_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 1
NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	214319	4445	57869	214319	integrase,transposase	Streptococcus_phage(31.25%)	48	2659:2718	57944:58377
2659:2718	attL	GATATATTGGACTTCCTCTTTTAAAACACAAAAATAAATACTACCTTATTTAGGTAGTAT	NA	NA	NA	NA
WP_094850654.1|4445_5571_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	2.3e-75
WP_002333354.1|6074_7283_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_002333355.1|7669_7876_-	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_010738670.1|8308_9487_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	3.4e-29
WP_157868084.1|9586_10504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000122610.1|10643_11936_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_079993992.1|12203_12800_-	YdhK family protein	NA	NA	NA	NA	NA
WP_002307659.1|12820_13027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002307657.1|13041_14436_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.8	7.2e-39
WP_002294790.1|14435_15116_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.4	2.8e-36
WP_033653695.1|15143_16727_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_002294786.1|16737_16962_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_002307655.1|17603_17813_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010738671.1|17829_20280_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.9	7.3e-87
WP_002307652.1|20263_20629_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_002307650.1|20644_21259_-	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
WP_002294779.1|21414_22218_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_002307648.1|22201_22426_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_002325573.1|22428_22608_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_002325571.1|24982_26266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002307641.1|26444_26852_-	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_002307639.1|27123_28623_+	peptidoglycan DD-metalloendopeptidase family protein	NA	V5R8R0	Arthrobacter_phage	40.5	6.0e-15
WP_002307630.1|29851_30148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002307629.1|30229_30496_-	YfhO family protein	NA	NA	NA	NA	NA
WP_126355944.1|30689_31852_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002301358.1|32362_32905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002307628.1|33217_33769_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	41.7	2.9e-31
WP_002319351.1|34008_34626_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_002300950.1|34642_35005_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	41.3	8.4e-16
WP_002292161.1|37488_37722_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_002322689.1|37868_38723_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_002300938.1|38707_39046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292156.1|39273_39978_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002337630.1|40122_40695_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	42.6	2.3e-23
WP_002303333.1|43073_43433_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002316734.1|43505_44324_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_002293556.1|44737_45169_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293555.1|45269_45569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002332339.1|45613_46264_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_002307605.1|48612_49005_-	OsmC family protein	NA	NA	NA	NA	NA
WP_002316738.1|49001_49892_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.1	6.7e-22
WP_002333342.1|50427_51102_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	67.0	5.9e-87
WP_002314381.1|51303_51708_-	DUF4430 domain-containing protein	NA	NA	NA	NA	NA
WP_002334645.1|51723_52287_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_010738673.1|52300_54784_-	vitamin B12-dependent ribonucleotide reductase	NA	A0A0K2CP92	Brevibacillus_phage	45.4	2.9e-184
WP_010738674.1|54933_55479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738668.1|56149_57103_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	7.4e-35
WP_001015311.1|57188_57869_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
57944:58377	attR	GATATATTGGACTTCCTCTTTTAAAACACAAAAATAAATACTACCTTATTTAGGTAGTATTTATTAAAAGTTACGTCAATTTTGATTAAAAATATACTACTTGAACCTCTCATGAGTAAAGTCACGAAATTTTTGGGAATAGAGCGTACTTGATATCTTATTTTTTCACTAATAGCAGTGTCTCTTATTCACCAAGCGATCCCCGTAGTTCCTACGGTTCTTAATTTTTCTCTAGACCAATGATTGTATCTTTAGACCTTCGGCCATAACATGGAGCAAAATAAAAAGGTACTAAGTCTTATATATCAATCTTCGAGTAACCGACGGTTAACAACCATATCGAGCGGCATTAATCACCCACCTGTAGAGGATGAGCGACTTTTGCCTAATTATTGTTAAAAGCCTAGTTTCATTTGTTTAGATTGGAAAATACG	NA	NA	NA	NA
>prophage 2
NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	214319	99055	177570	214319	holin,protease,transposase,integrase,bacteriocin	Streptococcus_phage(22.73%)	81	139130:139152	160004:160026
WP_002316074.1|99055_99259_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002295623.1|99333_99594_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	1.2e-11
WP_002330430.1|100042_100249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311001.1|100248_100500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738681.1|100515_100953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330428.1|101388_101559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293546.1|101633_102029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002336697.1|102010_102277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002307516.1|102286_102520_+	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
WP_086956687.1|103069_104231_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_016249814.1|104454_105363_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_008271463.1|105425_105671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311006.1|105768_105990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010738662.1|106379_107060_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.7	1.8e-107
WP_002303242.1|107224_107605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303241.1|107735_108686_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002303240.1|109203_109659_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_002303238.1|109999_110602_+	topoisomerase I	NA	F2Y1B5	Organic_Lake_phycodnavirus	31.8	7.7e-14
WP_072538890.1|110695_111028_+	topoisomerase I	NA	A0A1X9I6W8	Streptococcus_phage	96.8	2.2e-42
WP_002290556.1|112162_112930_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002290555.1|113419_113845_+	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
WP_002290554.1|113861_114377_+	galactose-6-phosphate isomerase subunit LacB	NA	A0A222YX14	Synechococcus_phage	36.0	3.3e-05
WP_002290553.1|114387_115320_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
WP_002290551.1|115322_116303_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002290550.1|116330_116648_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002290549.1|116647_118354_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002290548.1|118495_119902_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.0	3.6e-46
WP_002305107.1|119924_120197_+	DUF3884 family protein	NA	NA	NA	NA	NA
WP_002303235.1|120217_121117_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_123836059.1|121588_122751_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_010738659.1|123334_124222_-	3'-5' exoribonuclease	NA	A0A0A7RWA3	Clostridium_phage	36.0	1.1e-27
WP_002308079.1|124301_124805_-	hypothetical protein	NA	A0A1B2APZ3	Phage_Wrath	53.8	1.4e-37
WP_002308077.1|124767_125004_+	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	50.7	7.4e-13
WP_010738660.1|125239_127354_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.2	6.3e-119
WP_002330418.1|127930_128158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314345.1|128376_128568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015371046.1|128725_128878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311030.1|130478_130673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002316998.1|130686_130827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073357767.1|130804_132646_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	43.8	3.2e-103
WP_002311028.1|133202_133391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002307506.1|134114_134537_+	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
WP_002307505.1|134621_135275_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.0	5.8e-23
WP_002311027.1|135271_136036_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002343056.1|136846_137755_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002316138.1|137810_138308_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002325581.1|138344_139040_-	histidinol phosphate phosphatase HisJ family protein	NA	NA	NA	NA	NA
139130:139152	attL	AAAATTAACTAGCACCACGGGTA	NA	NA	NA	NA
WP_002307501.1|139779_140187_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.8	8.0e-15
WP_002295764.1|140183_140417_-	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002295762.1|140738_141824_+	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002318477.1|141886_142441_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002307497.1|144076_144889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303163.1|146681_147545_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
WP_002305953.1|147537_148095_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
WP_002303161.1|148091_149651_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
WP_002303160.1|149643_150549_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
WP_002303159.1|150553_150847_-	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
WP_002303158.1|150850_151864_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
WP_002303157.1|151889_153194_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002303156.1|153174_154362_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002303155.1|154549_155497_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_123836061.1|156498_157660_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002307485.1|157804_158242_-	universal stress protein	NA	NA	NA	NA	NA
WP_002311053.1|158250_159858_-	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_002335317.1|160024_160933_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
160004:160026	attR	TACCCGTGGTGCTAGTTAATTTT	NA	NA	NA	NA
WP_002298900.1|161258_161423_+|bacteriocin	leucocin A/sakacin P family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002307478.1|161432_161699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002335316.1|161994_164262_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	30.9	6.7e-127
WP_123836062.1|164388_164547_-	recombinase family protein	NA	NA	NA	NA	NA
WP_002307475.1|164703_165207_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_002307470.1|166698_167955_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_002307468.1|168110_168524_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	29.1	4.8e-07
WP_002311059.1|168706_169177_+	restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_002335312.1|169356_170202_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_002335311.1|170412_170553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|170861_171542_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_002307460.1|171714_171918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002307459.1|171929_172463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329884.1|173256_173940_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	2.9e-126
WP_002311063.1|174995_176294_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_002343056.1|176661_177570_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	214319	205608	214278	214319	transposase	Staphylococcus_phage(50.0%)	9	NA	NA
WP_002336731.1|205608_206841_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	26.6	1.5e-27
WP_002333998.1|206830_208426_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	51.1	2.3e-126
WP_002336730.1|208548_209334_+	SinI family restriction endonuclease	NA	NA	NA	NA	NA
WP_002334623.1|209326_209569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000222572.1|209805_210759_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_010738669.1|210682_211855_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	33.5	1.2e-13
WP_002336727.1|211884_212613_-	hypothetical protein	NA	A0A1B0T6A2	Bacillus_phage	26.5	1.8e-09
WP_002335394.1|212871_213420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292680.1|213420_214278_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
