assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000332755.1_ASM33275v1	NC_020163	Escherichia coli APEC O78, complete sequence	1	482475-482621	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TCTGTGTCGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACAACA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|193aa|up_7|NC_020163.1_473844_474423_+,NA|340aa|up_6|NC_020163.1_474423_475443_+,NA	NA|198aa|up_9|NC_020163.1_472531_473125_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_8|NC_020163.1_473269_473722_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|193aa|up_7|NC_020163.1_473844_474423_+	NA	NA|340aa|up_6|NC_020163.1_474423_475443_+	NA	NA|335aa|up_5|NC_020163.1_475500_476505_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_020163.1_476666_477083_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_020163.1_477129_477633_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NC_020163.1_477825_479022_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_020163.1_479075_481931_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_020163.1_481930_482374_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_020163.1_482634_484146_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_020163.1_484412_485513_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_020163.1_485512_486595_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_020163.1_486755_488258_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NC_020163.1_488335_489334_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NC_020163.1_489400_490720_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NC_020163.1_490784_491549_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NC_020163.1_491572_492604_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NC_020163.1_492820_493384_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NC_020163.1_493387_494407_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_000332755.1_ASM33275v1	NC_020163	Escherichia coli APEC O78, complete sequence	2	768436-768551	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|126aa|up_9|NC_020163.1_754440_754818_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NC_020163.1_754820_755642_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NC_020163.1_755638_756628_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NC_020163.1_756627_757914_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NC_020163.1_757966_760321_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NC_020163.1_760575_761391_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NC_020163.1_761507_762167_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NC_020163.1_762178_765085_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NC_020163.1_765249_767601_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NC_020163.1_767675_768371_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NC_020163.1_768570_770073_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NC_020163.1_770083_771784_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NC_020163.1_772122_773001_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NC_020163.1_773086_773851_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NC_020163.1_773964_774663_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NC_020163.1_774646_776257_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NC_020163.1_776232_777216_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NC_020163.1_777379_779035_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NC_020163.1_779123_779255_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NC_020163.1_779356_780535_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_000332755.1_ASM33275v1	NC_020163	Escherichia coli APEC O78, complete sequence	3	954018-954171	3	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Unclear	CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|150aa|up_8|NC_020163.1_943990_944440_+,NA	NA|161aa|up_9|NC_020163.1_940462_940945_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|150aa|up_8|NC_020163.1_943990_944440_+	NA	NA|257aa|up_7|NC_020163.1_945878_946649_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_6|NC_020163.1_946802_947276_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_5|NC_020163.1_947318_949763_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_4|NC_020163.1_950002_950581_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|NC_020163.1_950786_951554_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|NC_020163.1_951524_952265_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|250aa|up_1|NC_020163.1_952565_953315_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|NC_020163.1_953490_953988_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_0|NC_020163.1_954305_956045_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|262aa|down_1|NC_020163.1_955989_956775_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|352aa|down_2|NC_020163.1_956845_957901_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_3|NC_020163.1_957897_958350_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|47aa|down_4|NC_020163.1_959082_959223_+	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|486aa|down_5|NC_020163.1_959279_960737_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_6|NC_020163.1_960997_961456_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_7|NC_020163.1_961547_962792_+	PRK05077, frsA, esterase FrsA	NA|352aa|down_8|NC_020163.1_963288_964344_-	PRK10159, PRK10159, phosphoporin PhoE	NA|368aa|down_9|NC_020163.1_964631_965735_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional
GCF_000332755.1_ASM33275v1	NC_020163	Escherichia coli APEC O78, complete sequence	4	3609748-3610387	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,29,30	0	0	NA	NA	I-E:I-E:I-E	10,9,9	10	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NC_020163.1_3601621_3602383_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_020163.1_3602363_3603413_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_020163.1_3603409_3603889_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_020163.1_3603888_3604599_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_020163.1_3604617_3604929_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_020163.1_3605122_3605446_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_020163.1_3605495_3606101_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_020163.1_3606100_3607528_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_020163.1_3607529_3608438_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_020163.1_3608689_3609727_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_020163.1_3610482_3610776_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NC_020163.1_3610772_3611696_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_020163.1_3611692_3612343_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_020163.1_3612324_3613071_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_020163.1_3613081_3614137_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NC_020163.1_3614148_3614685_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NC_020163.1_3614681_3616244_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|51aa|down_7|NC_020163.1_3619234_3619387_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NC_020163.1_3619651_3620386_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NC_020163.1_3620459_3622172_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000332755.1_ASM33275v1	NC_020163	Escherichia coli APEC O78, complete sequence	5	3636085-3636601	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA|47aa|down_1|NC_020163.1_3637750_3637891_+	NA|424aa|up_9|NC_020163.1_3624729_3626001_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_020163.1_3625991_3626252_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_020163.1_3626268_3626844_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_020163.1_3626991_3627852_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_020163.1_3627848_3628628_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_020163.1_3628605_3630015_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_020163.1_3630036_3631491_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_020163.1_3631560_3632346_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_020163.1_3632664_3633942_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_020163.1_3633968_3635447_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_020163.1_3636940_3637612_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_020163.1_3637750_3637891_+	NA	NA|291aa|down_2|NC_020163.1_3637904_3638777_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_020163.1_3638836_3640135_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_020163.1_3640222_3641860_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_020163.1_3642087_3642879_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_020163.1_3642949_3643285_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_020163.1_3643284_3643533_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_020163.1_3643610_3645845_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NC_020163.1_3645892_3647194_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_000332755.1_ASM33275v1	NC_020163	Escherichia coli APEC O78, complete sequence	6	4065526-4065665	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|252aa|up_9|NC_020163.1_4054796_4055552_+	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|195aa|up_8|NC_020163.1_4055952_4056537_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|232aa|up_7|NC_020163.1_4056616_4057312_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|839aa|up_6|NC_020163.1_4057341_4059858_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|364aa|up_5|NC_020163.1_4059868_4060960_+	pfam00419, Fimbrial, Fimbrial protein	NA|287aa|up_4|NC_020163.1_4061002_4061863_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|679aa|up_3|NC_020163.1_4061927_4063964_+	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|132aa|up_2|NC_020163.1_4063921_4064317_+	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|197aa|up_1|NC_020163.1_4064336_4064927_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|192aa|up_0|NC_020163.1_4064936_4065512_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|347aa|down_0|NC_020163.1_4065716_4066757_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|212aa|down_1|NC_020163.1_4066829_4067465_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|173aa|down_2|NC_020163.1_4067592_4068111_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|148aa|down_3|NC_020163.1_4068090_4068534_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|101aa|down_4|NC_020163.1_4068584_4068887_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|down_5|NC_020163.1_4068873_4069377_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|175aa|down_6|NC_020163.1_4069370_4069895_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_7|NC_020163.1_4070103_4071099_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|293aa|down_8|NC_020163.1_4071107_4071986_+	PRK15447, PRK15447, putative protease; Provisional	NA|336aa|down_9|NC_020163.1_4072191_4073199_+	PRK10508, PRK10508, luciferase-like monooxygenase
