The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020127	Lawsonia intracellularis N343, complete sequence	1457568	185905	201646	1457568	tRNA	Staphylococcus_phage(36.36%)	15	NA	NA
WP_011526231.1|185905_188398_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.4	2.0e-185
WP_011526232.1|188435_189116_-	RadC family protein	NA	A0A1B2LRS6	Wolbachia_phage	29.4	7.6e-18
WP_011526233.1|189210_190188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011526234.1|190208_190736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011526235.1|190746_193254_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	44.2	1.5e-199
WP_011526236.1|193264_193750_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_011526237.1|193759_194233_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	41.6	7.4e-28
WP_015353676.1|194319_195552_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.4	2.8e-95
WP_011526239.1|195572_196238_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	33.5	2.2e-25
WP_015353677.1|196241_197378_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	34.1	9.7e-42
WP_015353678.1|197361_197853_-	cytidine/deoxycytidylate deaminase family protein	NA	A7KUY9	Bacillus_phage	41.4	5.3e-21
WP_011526241.1|197925_199164_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.7	2.6e-93
WP_011526242.1|199232_200483_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_015353679.1|200560_200800_-	acyl carrier protein	NA	M4QDG5	Prochlorococcus_phage	50.0	4.0e-06
WP_011526243.1|200902_201646_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	5.4e-17
>prophage 2
NC_020127	Lawsonia intracellularis N343, complete sequence	1457568	707510	714246	1457568		Erysipelothrix_phage(16.67%)	7	NA	NA
WP_011526659.1|707510_708923_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	29.8	8.3e-51
WP_011526660.1|708958_709837_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	55.6	3.3e-90
WP_011526661.1|709984_710578_+	IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	44.7	1.7e-37
WP_011526662.1|710793_711201_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	G8DF69	Emiliania_huxleyi_virus	29.0	4.4e-05
WP_011526663.1|711301_712312_-	NAD-dependent epimerase	NA	A0A2K9L4U8	Tupanvirus	30.7	6.0e-35
WP_011526664.1|712324_713056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011526665.1|713037_714246_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	29.2	1.8e-30
>prophage 3
NC_020127	Lawsonia intracellularis N343, complete sequence	1457568	1029708	1037144	1457568		Mycoplasma_phage(33.33%)	8	NA	NA
WP_011526912.1|1029708_1030815_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	39.5	4.9e-30
WP_011526913.1|1030801_1031686_+	ABC transporter permease subunit	NA	Q6GZ02	Mycoplasma_phage	25.2	7.8e-15
WP_011526914.1|1031685_1032462_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
WP_015353789.1|1032534_1033572_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011526916.1|1033747_1035016_-	DUF935 domain-containing protein	NA	A0A0M3LRU4	Mannheimia_phage	43.0	9.0e-89
WP_011526917.1|1035035_1035479_-	hypothetical protein	NA	A0A0A1IWZ1	Pseudomonas_phage	27.2	1.1e-06
WP_011526918.1|1035523_1036168_-	DUF3164 family protein	NA	A0A2P9JZH0	Alteromonadaceae_phage	42.4	5.9e-44
WP_011526919.1|1036403_1037144_+	helix-turn-helix transcriptional regulator	NA	A0A0N7C1P9	Escherichia_phage	34.4	1.7e-15
>prophage 1
NC_020130	Lawsonia intracellularis N343 plasmid 3, complete sequence	194613	122004	141005	194613	protease,head,plate,tail,holin	uncultured_Caudovirales_phage(25.0%)	20	NA	NA
WP_011527385.1|122004_123144_+|protease	phage protease	protease	J9SH47	Pseudomonas_phage	34.4	2.3e-35
WP_011527386.1|123239_124103_+|head	Mu-like prophage major head subunit gpT family protein	head	L7P7Y9	Pseudomonas_phage	50.4	1.2e-76
WP_011527387.1|124105_124555_+	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	27.4	5.8e-06
WP_011527388.1|124577_125222_+	DUF1834 family protein	NA	NA	NA	NA	NA
WP_011527389.1|125299_126715_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B7SDP8	Haemophilus_phage	42.3	1.2e-84
WP_011527390.1|126977_127367_+	hypothetical protein	NA	A0A0M3LRV6	Mannheimia_phage	40.0	3.7e-17
WP_011527391.1|127368_127692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155800204.1|127685_127838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011527392.1|127944_128814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011527393.1|129126_130392_+	DNA circularization N-terminal domain-containing protein	NA	A0A2H4JGT4	uncultured_Caudovirales_phage	41.3	2.0e-24
WP_011527394.1|130512_131544_+|tail	phage tail protein	tail	A0A2H4J9E6	uncultured_Caudovirales_phage	34.9	4.5e-54
WP_011527395.1|131607_132204_+|plate	phage baseplate assembly protein	plate	A0A0M3LPA3	Mannheimia_phage	34.8	2.0e-22
WP_011527396.1|132348_133044_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	27.2	1.7e-09
WP_011527397.1|133371_133758_-	RidA family protein	NA	NA	NA	NA	NA
WP_011527398.1|134034_135027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011527399.1|135112_136054_-	GDP-L-fucose synthase	NA	M1HKX0	Paramecium_bursaria_Chlorella_virus	59.4	9.6e-104
WP_011527400.1|136416_137775_-	replicative DNA helicase	NA	O80281	Escherichia_phage	46.3	3.9e-90
WP_041817127.1|138611_139757_+	GDP-mannose 4,6-dehydratase	NA	M1HKK4	Acanthocystis_turfacea_Chlorella_virus	61.9	1.4e-128
WP_011527402.1|140147_140474_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011527403.1|140630_141005_+|holin	putative holin	holin	NA	NA	NA	NA
