The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020059	Rhizobium tropici CIAT 899, complete sequence	3837060	1599870	1676721	3837060	portal,integrase,capsid,protease,head,tRNA,terminase,tail	uncultured_Mediterranean_phage(28.57%)	71	1629093:1629108	1661108:1661123
WP_015339676.1|1599870_1602714_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.8	7.1e-142
WP_015339677.1|1603216_1604476_+	transporter	NA	NA	NA	NA	NA
WP_135488179.1|1604834_1605164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041677378.1|1605156_1605960_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_015339679.1|1606023_1606815_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_015339680.1|1606944_1607277_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	41.0	1.2e-16
WP_015339681.1|1607585_1608803_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA	NA
WP_041677862.1|1608858_1610619_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_015339683.1|1610680_1613428_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_041677863.1|1613552_1614566_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_051043255.1|1614640_1615438_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.9	3.1e-34
WP_085999196.1|1615480_1616167_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.9	7.9e-39
WP_015339687.1|1616414_1616621_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	55.6	6.3e-08
WP_015339688.1|1616675_1617395_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_015339689.1|1617391_1618219_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	43.6	5.6e-47
WP_015339690.1|1618318_1619602_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.0	3.5e-96
WP_015339691.1|1619617_1620382_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.6	1.4e-23
WP_041677382.1|1620386_1621040_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	2.0e-15
WP_041677384.1|1621210_1622896_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	34.2	3.3e-14
WP_041677864.1|1622978_1623851_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_015339695.1|1624058_1624406_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_015339696.1|1624565_1627109_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	47.8	6.3e-57
WP_015339697.1|1627113_1627500_+	Mth938-like domain-containing protein	NA	NA	NA	NA	NA
WP_015339698.1|1627515_1628376_+	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_015339699.1|1628452_1628914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015339700.1|1629038_1630475_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
1629093:1629108	attL	GGCAAGCGCACGCTTG	NA	NA	NA	NA
WP_015339701.1|1630587_1630731_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_015339702.1|1631036_1631183_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_015339705.1|1632030_1633170_+	DUF2157 domain-containing protein	NA	NA	NA	NA	NA
WP_015339706.1|1633166_1633781_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_015339707.1|1634290_1635778_+	trigger factor	NA	NA	NA	NA	NA
WP_015339708.1|1636016_1636688_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_015339709.1|1636730_1638134_-	Si-specific NAD(P)(+) transhydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.9	5.4e-34
WP_041677865.1|1638243_1638840_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA	NA
WP_015339711.1|1639102_1639960_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_015339712.1|1639963_1640800_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_015339713.1|1640802_1641549_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_015339714.1|1641563_1643405_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_015339715.1|1643565_1644018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015339716.1|1644241_1645462_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA	NA
WP_015339717.1|1645519_1646839_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_015339718.1|1646896_1648699_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.2	2.1e-54
WP_015339719.1|1649382_1650174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015339720.1|1650378_1650819_-	VOC family protein	NA	NA	NA	NA	NA
WP_015339721.1|1651016_1651595_+	CspA family cold shock protein	NA	A0A1X9IGI9	Lactococcus_phage	36.9	1.5e-06
WP_041677866.1|1651763_1652924_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A077KET4	Ralstonia_phage	40.2	7.5e-66
WP_135488181.1|1652959_1653475_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015339724.1|1653591_1653801_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_015339725.1|1653881_1654979_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_015339726.1|1655151_1655361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015339727.1|1655357_1656494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015339728.1|1657387_1657786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015339729.1|1657742_1659716_+|terminase	putative phage terminase, large subunit	terminase	A0A0U2C138	Paracoccus_phage	48.3	1.3e-145
WP_015339730.1|1659734_1661054_+|portal	phage portal protein	portal	A0A0F7L418	uncultured_marine_virus	52.6	7.2e-105
WP_015339731.1|1661050_1661674_+|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	60.1	1.9e-47
1661108:1661123	attR	GGCAAGCGCACGCTTG	NA	NA	NA	NA
WP_015339732.1|1661752_1663003_+|capsid	phage major capsid protein	capsid	A0A0F7L2V9	uncultured_marine_virus	48.7	9.8e-104
WP_015339733.1|1663230_1663893_+|head,tail	phage head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	54.5	2.2e-06
WP_041677391.1|1663908_1664118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015339734.1|1664121_1664526_+	hypothetical protein	NA	B4UTP8	Rhizobium_phage	55.8	5.3e-27
WP_015339735.1|1664707_1665067_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_015339736.1|1665066_1665558_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_015339737.1|1665557_1665977_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_015339738.1|1666020_1666452_+|tail	phage major tail protein	tail	I3UM07	Rhodobacter_phage	38.3	2.0e-19
WP_015339739.1|1666475_1666856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081598374.1|1666882_1667056_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_015339740.1|1667223_1670529_+	tape measure protein	NA	A0A076G7H2	Sinorhizobium_phage	38.4	9.7e-42
WP_015339741.1|1670532_1671285_+	hypothetical protein	NA	A0A076GD29	Sinorhizobium_phage	51.4	6.0e-64
WP_015339742.1|1671351_1671951_+	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	67.3	7.0e-76
WP_041677394.1|1671958_1672366_+	hypothetical protein	NA	A0A076G6J4	Sinorhizobium_phage	53.8	7.5e-37
WP_041677395.1|1672362_1674549_+	hypothetical protein	NA	A0A076G8H4	Sinorhizobium_phage	53.7	4.0e-209
WP_015339745.1|1674585_1676721_+	right-handed parallel beta-helix repeat-containing protein	NA	B4UTR2	Rhizobium_phage	56.3	6.4e-71
>prophage 2
NC_020059	Rhizobium tropici CIAT 899, complete sequence	3837060	1808436	1823120	3837060	tRNA,transposase	uncultured_Mediterranean_phage(62.5%)	14	NA	NA
WP_015339880.1|1808436_1811358_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.1	0.0e+00
WP_041677885.1|1811631_1812183_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	75.4	4.1e-46
WP_085999169.1|1812282_1813043_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041677423.1|1813083_1813335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041677886.1|1813406_1814039_-	MarC family protein	NA	NA	NA	NA	NA
WP_015339883.1|1814263_1817059_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.4	4.0e-97
WP_015339884.1|1817209_1818100_-	NAD(P)-dependent oxidoreductase	NA	A0A2C9DSV6	Western_grey_kangaroopox_virus	35.7	1.4e-06
WP_015339886.1|1818482_1818641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_135488286.1|1818732_1818957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015339888.1|1819159_1819672_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	36.5	1.8e-24
WP_015339889.1|1819701_1820274_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	56.4	3.3e-46
WP_015339890.1|1820308_1820809_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	60.4	5.9e-44
WP_015339891.1|1820897_1821983_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_015339892.1|1821989_1823120_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	52.9	3.1e-101
>prophage 3
NC_020059	Rhizobium tropici CIAT 899, complete sequence	3837060	2391202	2470407	3837060	transposase,portal,tail,integrase,capsid,protease,plate,head,terminase,holin	Sinorhizobium_phage(20.93%)	98	2425418:2425433	2472396:2472411
WP_015340442.1|2391202_2391688_-	hypothetical protein	NA	W6EKF5	Rhizobium_phage	46.4	1.6e-30
WP_015340443.1|2391691_2392123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_135488283.1|2392160_2392553_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_015340445.1|2392572_2392800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340446.1|2392796_2393153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340447.1|2393152_2393650_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	35.6	1.9e-13
WP_015340448.1|2393720_2394692_-	DUF2184 domain-containing protein	NA	A0A2H4J526	uncultured_Caudovirales_phage	71.6	1.3e-132
WP_015340449.1|2394695_2395166_-	DUF2190 family protein	NA	A0A2H4J1G1	uncultured_Caudovirales_phage	57.1	1.6e-35
WP_015340450.1|2395192_2396308_-	DUF2213 domain-containing protein	NA	A0A2R3UA67	Siphoviridae_environmental_samples	43.4	6.5e-75
WP_015340451.1|2396408_2397749_-	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	51.7	1.4e-119
WP_041677922.1|2397796_2399155_-|terminase	phage terminase large subunit	terminase	H9C0U8	Aeromonas_phage	44.2	9.3e-92
WP_015340453.1|2399237_2399585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340454.1|2399856_2400555_+	methyltransferase	NA	NA	NA	NA	NA
WP_015340455.1|2400625_2401291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340456.1|2401265_2401682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340457.1|2401725_2402010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340458.1|2402085_2402310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340459.1|2402671_2403460_+	LexA family transcriptional regulator	NA	A0A291AUK0	Sinorhizobium_phage	74.6	1.3e-74
WP_135488282.1|2403763_2404153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340461.1|2404200_2404596_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
WP_015340462.1|2404666_2405317_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015340463.1|2405320_2406385_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_015340464.1|2406613_2407945_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.8	1.0e-34
WP_015340465.1|2407966_2409727_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_041677566.1|2409818_2410049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_135488281.1|2410763_2411069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_135488280.1|2411501_2412674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340467.1|2412828_2413323_+	RNA polymerase sigma factor	NA	A0A0F6TH34	Sinorhizobium_phage	31.3	1.1e-10
WP_161624408.1|2413333_2413705_-	response regulator	NA	NA	NA	NA	NA
WP_015340469.1|2414002_2414719_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_041677924.1|2414747_2415170_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_015340471.1|2415251_2415449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340472.1|2415459_2415642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340473.1|2415654_2415897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041677568.1|2415946_2416804_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	48.4	6.8e-64
WP_015340475.1|2416869_2417955_-	DNA topoisomerase IB	NA	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	34.0	1.4e-42
WP_015340476.1|2418150_2419935_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_015340478.1|2420417_2420639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340479.1|2420788_2421112_-	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
WP_015340480.1|2421257_2422931_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_154660797.1|2422917_2423346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340482.1|2423465_2423720_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_015340483.1|2423930_2424164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340484.1|2424293_2424794_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_085999178.1|2424937_2425111_-	hypothetical protein	NA	NA	NA	NA	NA
2425418:2425433	attL	TGGTGGGCCCGGAGGG	NA	NA	NA	NA
WP_015340487.1|2425747_2426164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340488.1|2426435_2427233_-	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_015340489.1|2427336_2428338_-	hypothetical protein	NA	A0A2I6PCS6	Staphylococcus_phage	39.6	5.2e-23
WP_015340490.1|2428535_2429264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340491.1|2429275_2430004_+	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	32.6	1.7e-23
WP_015340492.1|2430000_2430207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340493.1|2430196_2430472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085999177.1|2430636_2431783_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	47.5	4.4e-66
WP_015340494.1|2432004_2432328_-|holin	phage holin family protein	holin	A0A291AUN9	Sinorhizobium_phage	65.7	2.7e-37
WP_015340495.1|2432340_2432592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340496.1|2432653_2433286_-	hypothetical protein	NA	A0A0F6WBX9	Sinorhizobium_phage	61.3	4.1e-66
WP_015340497.1|2433381_2433624_+	DUF4160 domain-containing protein	NA	NA	NA	NA	NA
WP_135488209.1|2433645_2434119_+	DUF2442 domain-containing protein	NA	NA	NA	NA	NA
WP_015340499.1|2434638_2435088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041677577.1|2435274_2436429_-	phage late control D family protein	NA	V5YTN9	Pseudomonas_phage	30.6	2.4e-32
WP_041677579.1|2436431_2436644_-|tail	tail protein X	tail	A0A2H4J946	uncultured_Caudovirales_phage	50.8	6.6e-13
WP_015340501.1|2436648_2437113_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_148289259.1|2437432_2438188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340503.1|2438190_2440359_-|tail	phage tail tape measure protein	tail	A0A088FV68	Escherichia_phage	39.1	1.4e-57
WP_015340504.1|2440483_2440756_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_015340505.1|2440835_2441348_-|tail	phage major tail tube protein	tail	Q7M2A5	Pseudomonas_phage	33.3	8.3e-17
WP_015340506.1|2441363_2442830_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	V5YTI0	Pseudomonas_phage	40.6	4.3e-50
WP_135488201.1|2442979_2443609_-	hypothetical protein	NA	A0A1Y0SVH3	Sinorhizobium_phage	39.8	1.2e-09
WP_081598401.1|2443584_2444397_-	hypothetical protein	NA	A0A286N2T9	Arthrobacter_phage	36.6	1.1e-10
WP_015340509.1|2446368_2446554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340510.1|2446571_2448863_-	hypothetical protein	NA	A0A1X9SGY8	Bradyrhizobium_phage	34.3	2.0e-110
WP_015340511.1|2448865_2450080_-|tail	phage tail protein I	tail	A0A1X9SH73	Bradyrhizobium_phage	29.0	4.2e-43
WP_015340512.1|2450076_2450967_-|plate	baseplate J/gp47 family protein	plate	E5FFH3	Burkholderia_phage	33.8	3.9e-30
WP_015340513.1|2450969_2451347_-	GPW/gp25 family protein	NA	A0A193GYY8	Enterobacter_phage	45.1	7.9e-17
WP_041677582.1|2451793_2452252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340514.1|2452352_2452904_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_015340515.1|2452900_2453653_-	hypothetical protein	NA	A0A0A8IKZ7	Aurantimonas_phage	44.6	1.2e-40
WP_135488202.1|2453671_2454061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340518.1|2454113_2455169_-|capsid	major capsid protein	capsid	Q9JMM2	Wolbachia_phage	32.9	6.0e-38
WP_015340519.1|2455255_2455690_-|head	head decoration protein	head	A0A1B2LRT0	Wolbachia_phage	33.3	2.1e-05
WP_015340520.1|2455746_2456790_-|protease	Clp protease ClpP	protease	A0A0A8IKZ4	Aurantimonas_phage	62.4	4.5e-94
WP_015340521.1|2456800_2457058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041677930.1|2457057_2458659_-|portal	phage portal protein	portal	A0A0A8IK73	Aurantimonas_phage	42.5	7.4e-104
WP_135488211.1|2458709_2460752_-|terminase	phage terminase large subunit family protein	terminase	G8DH41	Emiliania_huxleyi_virus	33.1	1.1e-96
WP_015340524.1|2460817_2461444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041677586.1|2461614_2462184_-	hypothetical protein	NA	A0A0A8IL87	Aurantimonas_phage	35.4	1.2e-24
WP_135488204.1|2462411_2463089_-	antitermination protein	NA	A0A291AUS6	Sinorhizobium_phage	35.0	5.6e-21
WP_015340527.1|2463078_2464293_-	helix-turn-helix domain-containing protein	NA	A0A291AUS5	Sinorhizobium_phage	47.8	4.3e-72
WP_015340528.1|2464289_2464583_-	hypothetical protein	NA	A0A068C9G0	Rhizobium_phage	48.9	1.4e-16
WP_015340529.1|2464579_2465128_-	hypothetical protein	NA	A0A291AUS3	Sinorhizobium_phage	40.1	1.6e-26
WP_015340530.1|2465124_2466522_-	SAM-dependent methyltransferase	NA	A0A068C9F4	Rhizobium_phage	63.2	1.5e-132
WP_015340531.1|2466521_2466770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015340532.1|2466766_2467264_-	hypothetical protein	NA	R9TQJ7	Rhizobium_phage	58.2	6.5e-43
WP_015340534.1|2467825_2468128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340535.1|2468639_2468834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154660798.1|2468901_2469039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015340536.1|2469055_2469310_+	hypothetical protein	NA	A0A291AUJ1	Sinorhizobium_phage	54.8	3.0e-12
WP_015340537.1|2469318_2470407_+|integrase	tyrosine-type recombinase/integrase	integrase	B0VK72	Azospirillum_phage	32.3	1.8e-21
2472396:2472411	attR	TGGTGGGCCCGGAGGG	NA	NA	NA	NA
>prophage 4
NC_020059	Rhizobium tropici CIAT 899, complete sequence	3837060	2909307	2920365	3837060	transposase	Paenibacillus_phage(25.0%)	7	NA	NA
WP_015340960.1|2909307_2910075_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.3	2.9e-21
WP_085999180.1|2911880_2912982_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.4	1.2e-44
WP_015340848.1|2913329_2914355_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_041677645.1|2914662_2916054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085999181.1|2916516_2917643_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	62.7	1.7e-91
WP_015340964.1|2917899_2918847_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	26.9	3.5e-13
WP_015339923.1|2919177_2920365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_020059	Rhizobium tropici CIAT 899, complete sequence	3837060	3731554	3738923	3837060		Acanthocystis_turfacea_Chlorella_virus(33.33%)	7	NA	NA
WP_015341695.1|3731554_3732637_-	GDP-mannose 4,6-dehydratase	NA	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	69.6	1.6e-139
WP_015341696.1|3733693_3734812_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_015341697.1|3734996_3735365_+	phosphomannose isomerase type II C-terminal cupin domain	NA	M1HHK7	Acanthocystis_turfacea_Chlorella_virus	40.9	1.0e-16
WP_015341698.1|3735378_3735927_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	58.7	1.4e-51
WP_015341699.1|3735983_3736871_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	3.0e-99
WP_015341700.1|3736956_3737859_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	34.8	4.1e-27
WP_015341701.1|3737855_3738923_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.1	1.4e-87
>prophage 1
NC_020060	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence	216610	66520	109986	216610	integrase,transposase	Bacillus_phage(14.29%)	39	80129:80146	112829:112846
WP_004110519.1|66520_67717_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.3	2.6e-90
WP_015341843.1|68234_68765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015341844.1|68761_69790_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_015341845.1|69793_70594_-	DUF1295 domain-containing protein	NA	NA	NA	NA	NA
WP_015341846.1|70762_72136_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015341847.1|72132_72966_+	DUF1365 family protein	NA	NA	NA	NA	NA
WP_015341848.1|72952_74185_+	class I SAM-dependent methyltransferase	NA	A0A2K9L0U7	Tupanvirus	30.1	5.2e-33
WP_015341849.1|74213_74585_+	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
WP_041678058.1|74617_75037_+	DUF2177 family protein	NA	NA	NA	NA	NA
WP_015341851.1|75075_75573_-	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_015341852.1|75711_76365_+	sigma-70 family RNA polymerase sigma factor	NA	A0A076YQ50	Rhizobium_phage	24.1	7.1e-05
WP_015341853.1|76361_77012_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_015341854.1|77367_78474_+	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_041678042.1|78488_78911_+	response regulator	NA	NA	NA	NA	NA
WP_015341856.1|79112_82271_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
80129:80146	attL	GTTGATCACTGCCGACAT	NA	NA	NA	NA
WP_135488263.1|82267_83386_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_041678063.1|84313_85000_-	SDR family NAD(P)-dependent oxidoreductase	NA	Q56AQ6	Bacillus_thuringiensis_phage	36.4	5.3e-27
WP_081598412.1|85011_86634_-	cryptochrome/photolyase family protein	NA	E3T4R9	Cafeteria_roenbergensis_virus	28.4	3.2e-54
WP_015341861.1|86572_87175_-	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	45.6	1.9e-41
WP_041678065.1|87602_87839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148289262.1|87918_88791_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.3	1.1e-16
WP_135488259.1|89947_90610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161624410.1|91542_92067_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_015341865.1|92396_92651_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_015341866.1|92650_93076_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_051043295.1|93576_94854_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_015341868.1|94904_95561_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.0	3.2e-21
WP_015341869.1|95695_96268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015341870.1|96272_96935_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.1e-21
WP_135488298.1|96927_97668_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	2.0e-24
WP_015341872.1|100333_100585_+	DUF1344 domain-containing protein	NA	NA	NA	NA	NA
WP_015341873.1|100826_101216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015341874.1|101290_102130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_135488295.1|102265_103189_+	glycosyltransferase family 25 protein	NA	A0A1S5NQ44	Burkholderia_phage	23.8	2.8e-07
WP_015341877.1|104723_105407_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_081598414.1|105840_106557_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	37.0	4.2e-27
WP_015341879.1|106841_107834_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	26.5	4.1e-12
WP_015341880.1|107830_108769_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015341881.1|108765_109986_-|integrase	tyrosine-type recombinase/integrase	integrase	W8EHC2	Mycobacterium_phage	29.1	2.5e-11
112829:112846	attR	GTTGATCACTGCCGACAT	NA	NA	NA	NA
>prophage 1
NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	549467	55574	111615	549467	transposase	Corynebacterium_phage(22.22%)	41	NA	NA
WP_015341970.1|55574_56690_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_004119985.1|56729_57002_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004119987.1|57276_58314_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_135488308.1|58540_59170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_120764172.1|60214_60466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_120764173.1|60861_61086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004119995.1|61209_61527_-	integration host factor subunit beta	NA	A3E2K9	Sodalis_phage	39.1	1.9e-08
WP_004110519.1|62073_63270_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.3	2.6e-90
WP_004120006.1|63602_64784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004120008.1|65794_66790_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004120011.1|67739_68804_-	ATP-dependent DNA ligase	NA	A0A068CDF3	Rhizobium_phage	63.2	8.6e-125
WP_004120014.1|68800_69238_-	Ku protein	NA	NA	NA	NA	NA
WP_004120015.1|69674_70181_+	helix-turn-helix transcriptional regulator	NA	K4K6E9	Caulobacter_phage	38.8	3.8e-14
WP_004120017.1|70854_71757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004120019.1|71753_73301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004120020.1|73482_74481_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_028755176.1|74586_75930_-	cytochrome P450	NA	NA	NA	NA	NA
WP_004120024.1|75929_76775_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.7	4.6e-12
WP_004120026.1|76761_77070_-	ferredoxin	NA	NA	NA	NA	NA
WP_004120028.1|77071_78364_-	cytochrome P450	NA	A0A2I2L481	Orpheovirus	20.7	1.3e-05
WP_004120030.1|78453_79656_-	cytochrome P450	NA	NA	NA	NA	NA
WP_004120034.1|80984_81260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004120036.1|82696_83953_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_004120039.1|84270_85131_+	alpha/beta hydrolase	NA	A0A249XU20	Mycobacterium_phage	37.7	1.6e-12
WP_004120041.1|85966_88156_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	32.8	7.6e-43
WP_004120043.1|88465_88870_+	DoxX family protein	NA	NA	NA	NA	NA
WP_004120045.1|89453_90494_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004119987.1|91563_92601_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_004120053.1|94250_95225_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004120055.1|95772_96306_-	DUF4168 domain-containing protein	NA	NA	NA	NA	NA
WP_004120058.1|96475_97504_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_004120061.1|97716_98829_-	histidinol-phosphate aminotransferase family protein	NA	NA	NA	NA	NA
WP_004120063.1|99187_99448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004111509.1|101083_102412_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_085999210.1|103377_104437_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_120671006.1|106097_106664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004112688.1|106928_107918_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004112689.1|108031_108622_-	NodA family N-acyltransferase	NA	NA	NA	NA	NA
WP_004112691.1|108882_109131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004112693.1|109197_109953_-	aquaporin	NA	NA	NA	NA	NA
WP_004110519.1|110418_111615_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.3	2.6e-90
>prophage 2
NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	549467	216868	277695	549467	transposase	Corynebacterium_phage(20.0%)	58	NA	NA
WP_004110519.1|216868_218065_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.3	2.6e-90
WP_004125917.1|218198_218423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004125924.1|218576_219929_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_004125926.1|220118_221660_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_004125927.1|221646_222267_+	response regulator	NA	NA	NA	NA	NA
WP_015341887.1|222586_224086_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.2	8.9e-19
WP_015341995.1|224087_224822_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	32.5	7.7e-32
WP_004125929.1|225186_225846_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_135488301.1|226130_226439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004125932.1|227344_227812_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004125935.1|228077_229376_-	replication protein C	NA	NA	NA	NA	NA
WP_004125937.1|229717_230056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004125939.1|230245_230707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004125942.1|231592_232138_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004125950.1|232404_232617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015341997.1|232856_234053_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	49.7	1.5e-88
WP_004125953.1|234412_235339_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004125955.1|235666_236257_+	NodA family N-acyltransferase	NA	NA	NA	NA	NA
WP_004125963.1|236253_236913_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA	NA
WP_004125966.1|236924_238283_+	chitooligosaccharide synthase NodC	NA	M1HPL2	Paramecium_bursaria_Chlorella_virus	25.5	3.1e-10
WP_004125970.1|238200_238917_+	nodulation S family protein	NA	NA	NA	NA	NA
WP_004125972.1|238952_240680_+	nodulation protein NodU	NA	A0A292GAM4	Xanthomonas_phage	29.0	3.0e-34
WP_081598441.1|240583_241582_+	nodulation factor ABC transporter ATP-binding protein NodI	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.4	4.5e-27
WP_004125979.1|241585_242371_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004125982.1|242403_242853_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_004125985.1|242955_243705_+	nodulation protein H	NA	NA	NA	NA	NA
WP_004125988.1|243710_244610_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_004125998.1|246651_246972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004126001.1|247022_247277_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_004126005.1|247874_249212_-|transposase	ISNCY-like element ISRtr6 family transposase	transposase	NA	NA	NA	NA
WP_154660803.1|249479_249653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004126008.1|250606_250915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004126015.1|251361_251724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037136675.1|251913_252213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004126018.1|252829_253711_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_004126022.1|253745_253958_-	putative nitrogen fixation protein NifT	NA	NA	NA	NA	NA
WP_004126025.1|253954_254278_-	nitrogen fixation protein NifZ	NA	NA	NA	NA	NA
WP_004126027.1|254371_254566_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_004126030.1|254599_256081_-	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA	NA
WP_004126033.1|256313_258062_-	nif-specific transcriptional activator NifA	NA	NA	NA	NA	NA
WP_004126035.1|258238_258538_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_004126038.1|258550_259855_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_004126048.1|259867_260980_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_004126051.1|260992_261844_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_004126055.1|262025_262409_-	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA	NA
WP_004126059.1|262604_263831_-	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	41.7	5.5e-43
WP_004126062.1|263878_264520_-	iron-sulfur cluster assembly scaffold protein	NA	NA	NA	NA	NA
WP_004126065.1|264545_264866_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_004126068.1|265350_266007_+	nitrogen fixation protein NifQ	NA	NA	NA	NA	NA
WP_004126070.1|266052_267495_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_004126073.1|267574_268114_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	57.5	4.7e-47
WP_004126075.1|268832_269711_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA	NA
WP_004126078.1|270012_270741_-	aspartate/glutamate/uridylate kinase	NA	NA	NA	NA	NA
WP_004126081.1|271740_272307_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_004126084.1|272422_273925_+	SDR family oxidoreductase	NA	L7Y2R3	Megavirus	35.1	3.3e-05
WP_004126087.1|274171_275227_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_004126090.1|275440_276262_+|transposase	IS5-like element ISRtr3 family transposase	transposase	NA	NA	NA	NA
WP_004126092.1|276312_277695_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	549467	298095	352298	549467	integrase,protease,transposase	Stx2-converting_phage(25.0%)	43	295268:295284	338316:338332
295268:295284	attL	GGTATCGATGCTTCGGC	NA	NA	NA	NA
WP_004126132.1|298095_298929_-|transposase	IS5-like element ISRtr4 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	26.8	5.5e-10
WP_004126135.1|299187_300156_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004126138.1|300399_301674_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	3.1e-20
WP_004126142.1|301954_303553_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	35.1	6.7e-73
WP_081598442.1|303628_303823_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_004126144.1|305038_305971_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_004126146.1|305967_306975_+|integrase	site-specific integrase	integrase	A0A0K2CP59	Brevibacillus_phage	24.2	3.0e-10
WP_141694186.1|307051_307174_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_004126148.1|307170_307554_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_004126149.1|307740_308013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004126151.1|308040_308934_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004126157.1|310786_311587_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	44.4	1.5e-57
WP_004126170.1|312701_313571_-	cupin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004126178.1|315466_316300_-|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	26.5	7.9e-09
WP_051043303.1|316429_316888_-	reverse transcriptase N-terminal domain-containing protein	NA	A0A0U4J920	Pseudomonas_phage	47.9	7.1e-20
WP_004126182.1|317823_318171_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	52.8	1.4e-28
WP_004126183.1|318167_318545_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_004126188.1|319144_320392_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_004121997.1|321428_321884_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	42.5	3.1e-07
WP_004121998.1|321864_322218_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	46.2	3.6e-19
WP_015342012.1|323059_324091_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_004128843.1|326062_327205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154660804.1|327420_327597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004128845.1|327669_328515_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	34.7	2.8e-38
WP_004128847.1|328593_329877_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_004128849.1|330490_331537_+	peptidase C45	NA	NA	NA	NA	NA
WP_015342013.1|331702_332197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004128850.1|332470_334252_-	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_004128852.1|334503_335694_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_004128854.1|336241_337345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004128856.1|337482_338577_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	6.5e-27
338316:338332	attR	GGTATCGATGCTTCGGC	NA	NA	NA	NA
WP_004128865.1|338595_340368_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_004128868.1|340749_341634_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004128870.1|341868_343194_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_004128874.1|343206_343743_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_004128877.1|343915_345094_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_004128880.1|345275_345743_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004128884.1|345884_347069_+	amidohydrolase	NA	NA	NA	NA	NA
WP_004128886.1|347098_348088_+	hydroxyectoine utilization dehydratase EutB	NA	NA	NA	NA	NA
WP_004128888.1|348084_349074_+	ectoine utilization protein EutC	NA	NA	NA	NA	NA
WP_004128890.1|349195_349912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004128891.1|349942_351124_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_004128892.1|351242_352298_+|protease	cysteine protease	protease	NA	NA	NA	NA
>prophage 4
NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	549467	372609	425554	549467	integrase,protease,transposase	Stx2-converting_phage(37.5%)	44	361771:361788	396441:396458
361771:361788	attL	GACGGCAGCCTCTTTTTT	NA	NA	NA	NA
WP_004126144.1|372609_373542_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_004126146.1|373538_374546_+|integrase	site-specific integrase	integrase	A0A0K2CP59	Brevibacillus_phage	24.2	3.0e-10
WP_085999213.1|374678_374906_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_004128951.1|374954_376529_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	34.7	6.0e-74
WP_004128954.1|376525_377089_+	UPF0149 family protein	NA	NA	NA	NA	NA
WP_004128957.1|377269_378415_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_004128985.1|378706_379636_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_004128988.1|379659_380409_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_004128992.1|380424_381300_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004128995.1|381296_382475_-	CoA transferase	NA	NA	NA	NA	NA
WP_015342015.1|382474_383668_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004128999.1|383816_384713_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004129003.1|386652_387723_-|protease	cysteine protease	protease	NA	NA	NA	NA
WP_004129006.1|387783_389022_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_004129017.1|389572_389806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004129019.1|389786_391445_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	43.8	1.3e-103
WP_004129022.1|391513_391861_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	51.4	2.0e-27
WP_004126183.1|391857_392235_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_028755383.1|392657_393401_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.8e-28
WP_004129028.1|393523_394498_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004129031.1|394554_395391_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_081670487.1|396069_396348_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_004129043.1|398391_399681_-	citrate (Si)-synthase	NA	NA	NA	NA	NA
396441:396458	attR	GACGGCAGCCTCTTTTTT	NA	NA	NA	NA
WP_076611960.1|399821_401049_+|transposase	IS3-like element ISRtr2 family transposase	transposase	Q8W6R2	Burkholderia_virus	65.6	4.5e-101
WP_015342020.1|401148_401328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004122955.1|401391_402984_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_004122953.1|403108_404506_+	DUF2083 domain-containing protein	NA	NA	NA	NA	NA
WP_004122951.1|404797_405694_+	MFS transporter	NA	NA	NA	NA	NA
WP_004122949.1|405872_406502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004122947.1|406498_407905_+	His-Xaa-Ser system radical SAM maturase HxsB	NA	S5VT21	Leptospira_phage	27.5	3.0e-32
WP_004122943.1|407901_408984_+	His-Xaa-Ser system radical SAM maturase HxsC	NA	S5WIP3	Leptospira_phage	33.8	9.5e-47
WP_004122938.1|408980_409604_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA	NA
WP_004122936.1|409610_410795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004122931.1|411551_413459_-	protein kinase	NA	NA	NA	NA	NA
WP_004122929.1|413455_414241_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
WP_004122927.1|414222_414903_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_051043315.1|416815_417340_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_004122924.1|418581_419235_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_004122921.1|420430_420697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004122919.1|420933_421155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081598434.1|421377_421722_+	DUF4263 domain-containing protein	NA	NA	NA	NA	NA
WP_004122917.1|422014_422593_+	SLATT domain-containing protein	NA	NA	NA	NA	NA
WP_004122915.1|422598_423915_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_004118201.1|424132_425554_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	549467	446456	487648	549467	integrase,transposase	Enterobacteria_phage(30.77%)	37	471821:471837	477790:477806
WP_028754964.1|446456_447977_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	27.9	6.7e-22
WP_051043305.1|449679_450408_+	DUF4041 domain-containing protein	NA	Q5G8X0	Enterobacteria_phage	39.5	5.8e-24
WP_015342012.1|451659_452691_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_004118312.1|453529_453883_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	44.6	6.1e-19
WP_120671011.1|453863_454313_-|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	48.6	1.4e-07
WP_085999215.1|454364_455117_+	GIY-YIG nuclease family protein	NA	Q9MC01	Enterobacteria_phage	54.0	9.0e-36
WP_004118310.1|455361_456102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004118308.1|456635_457046_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004118306.1|457373_458408_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_004118304.1|459202_460327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118303.1|460363_460684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118301.1|460716_461040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118299.1|461432_462023_-	DUF433 domain-containing protein	NA	NA	NA	NA	NA
WP_004118296.1|462104_463394_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_004118293.1|463393_463741_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004118290.1|464013_464667_+	DUF433 domain-containing protein	NA	NA	NA	NA	NA
WP_004118284.1|464663_465080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118282.1|465275_466919_+	MFS transporter	NA	NA	NA	NA	NA
WP_004118281.1|467299_468937_+	MFS transporter	NA	NA	NA	NA	NA
WP_004118278.1|469691_470048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041678080.1|470466_470886_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_015342033.1|470885_471752_+|transposase	IS3 family transposase	transposase	Q6H9S6	Enterobacteria_phage	31.1	8.8e-27
471821:471837	attL	ACCGGACGCGATTCCGA	NA	NA	NA	NA
WP_004118273.1|472727_473990_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	19.6	1.5e-06
WP_004118271.1|473986_474976_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1Q1PVS7	Staphylococcus_phage	22.4	1.5e-06
WP_004118264.1|474959_475976_+|integrase	tyrosine-type recombinase/integrase	integrase	S5MBZ0	Brevibacillus_phage	25.8	8.2e-08
WP_015342034.1|476966_477722_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	44.6	2.1e-53
WP_004118262.1|478237_478465_-	hypothetical protein	NA	NA	NA	NA	NA
477790:477806	attR	TCGGAATCGCGTCCGGT	NA	NA	NA	NA
WP_004118261.1|478592_479039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118260.1|479026_479422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004118259.1|479570_479945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004121997.1|480110_480566_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	42.5	3.1e-07
WP_004121998.1|480546_480900_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	46.2	3.6e-19
WP_015342012.1|481741_482773_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_004121984.1|484130_484382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004119985.1|484474_484747_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004129017.1|485775_486009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004129019.1|485989_487648_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	43.8	1.3e-103
>prophage 1
NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	2083197	848051	857513	2083197	transposase	Corynebacterium_phage(14.29%)	10	NA	NA
WP_004110519.1|848051_849248_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.3	2.6e-90
WP_041678181.1|849302_849605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015342817.1|850191_850413_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	58.9	3.6e-17
WP_015342818.1|850424_850820_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A249Y1D6	Staphylococcus_phage	31.0	1.1e-05
WP_015342819.1|850807_853018_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.3	6.6e-212
WP_015342820.1|853038_854013_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	74.9	2.3e-137
WP_015342821.1|854169_854448_-	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	43.7	6.9e-10
WP_015342823.1|854803_855025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015342824.1|855186_856185_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_015342825.1|856502_857513_+	zinc-dependent alcohol dehydrogenase family protein	NA	E3SJ82	Synechococcus_phage	26.7	1.4e-15
