assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000328625.1_ASM32862v1	NC_019978	Halobacteroides halobius DSM 5150, complete sequence	1	15251-15474	1,1	PILER-CR,CRISPRCasFinder	no		RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	Orphan	TTGACAGTGATAAAATAATTTGTTAATATAGTAGATGTCGCTTGAAAAGA,AATTTGTTAATATAGTAGACGTCGCTTGA	50,29	0	0	NA	NA	NA:NA	2,2	2	Orphan	RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	NA|75aa|up_0|NC_019978.1_14942_15167_-,NA	NA|373aa|up_9|NC_019978.1_3314_4433_+	PRK00064, recF, recombination protein F; Reviewed	NA|289aa|up_8|NC_019978.1_4435_5302_+	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|86aa|up_7|NC_019978.1_5339_5597_+	pfam04025, DUF370, Domain of unknown function (DUF370)	NA|635aa|up_6|NC_019978.1_5619_7524_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|809aa|up_5|NC_019978.1_7534_9961_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|335aa|up_4|NC_019978.1_10017_11022_-	cd19992, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems	NA|527aa|up_3|NC_019978.1_11147_12728_+	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|356aa|up_2|NC_019978.1_12768_13836_+	pfam03845, Spore_permease, Spore germination protein	NA|380aa|up_1|NC_019978.1_13819_14959_+	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family	NA|75aa|up_0|NC_019978.1_14942_15167_-	NA	NA|333aa|down_0|NC_019978.1_21432_22431_+	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|389aa|down_1|NC_019978.1_22801_23968_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|529aa|down_2|NC_019978.1_23967_25554_+	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|428aa|down_3|NC_019978.1_25574_26858_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|475aa|down_4|NC_019978.1_26965_28390_+	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|82aa|down_5|NC_019978.1_29032_29278_+	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]	NA|563aa|down_6|NC_019978.1_29278_30967_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|383aa|down_7|NC_019978.1_30969_32118_+	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E	NA|75aa|down_8|NC_019978.1_32132_32357_+	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin	NA|504aa|down_9|NC_019978.1_32386_33898_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3
GCF_000328625.1_ASM32862v1	NC_019978	Halobacteroides halobius DSM 5150, complete sequence	2	935878-938288	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas4,WYL,cas3,cas8a4,cas7,cas5,cas6	RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	Unclear	GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG,GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG,GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	37,37,37	0	0	NA	NA	NA:NA:NA	32,32,32	32	Unclear	RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	NA|180aa|up_8|NC_019978.1_929584_930124_+,NA|68aa|up_5|NC_019978.1_932209_932413_+,NA|59aa|up_0|NC_019978.1_935436_935613_+,cas8a4|623aa|down_2|NC_019978.1_942327_944196_+,cas5|227aa|down_4|NC_019978.1_945160_945841_+	NA|60aa|up_9|NC_019978.1_929279_929459_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|180aa|up_8|NC_019978.1_929584_930124_+	NA	NA|402aa|up_7|NC_019978.1_930549_931755_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|134aa|up_6|NC_019978.1_931790_932192_+	pfam18423, zf_CopZ, Zinc binding domain	NA|68aa|up_5|NC_019978.1_932209_932413_+	NA	cas1|339aa|up_4|NC_019978.1_932584_933601_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|82aa|up_3|NC_019978.1_933602_933848_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|190aa|up_2|NC_019978.1_933861_934431_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas4|306aa|up_1|NC_019978.1_934430_935348_+	pfam06023, Csa1, CRISPR-associated exonuclease Csa1	NA|59aa|up_0|NC_019978.1_935436_935613_+	NA	WYL|332aa|down_0|NC_019978.1_938697_939693_+	pfam13280, WYL, WYL domain	cas3|746aa|down_1|NC_019978.1_940075_942313_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8a4|623aa|down_2|NC_019978.1_942327_944196_+	NA	cas7|320aa|down_3|NC_019978.1_944188_945148_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|227aa|down_4|NC_019978.1_945160_945841_+	NA	cas6|319aa|down_5|NC_019978.1_945854_946811_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|443aa|down_6|NC_019978.1_948587_949916_+	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|123aa|down_7|NC_019978.1_949933_950302_+	pfam06133, Com_YlbF, Control of competence regulator ComK, YlbF/YmcA	NA|879aa|down_8|NC_019978.1_950432_953069_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|612aa|down_9|NC_019978.1_953214_955050_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL
GCF_000328625.1_ASM32862v1	NC_019978	Halobacteroides halobius DSM 5150, complete sequence	3	947122-948433	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas4,WYL,cas3,cas8a4,cas7,cas5,cas6	RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	Unclear	GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG,GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG,GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	37,37,37	0	0	NA	NA	NA:NA:NA	17,17,17	17	Unclear	RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	NA|59aa|up_6|NC_019978.1_935436_935613_+,cas8a4|623aa|up_3|NC_019978.1_942327_944196_+,cas5|227aa|up_1|NC_019978.1_945160_945841_+,NA|109aa|down_5|NC_019978.1_956024_956351_+,NA|164aa|down_8|NC_019978.1_958111_958603_+,NA|68aa|down_9|NC_019978.1_958614_958818_+	cas2|82aa|up_9|NC_019978.1_933602_933848_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|190aa|up_8|NC_019978.1_933861_934431_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas4|306aa|up_7|NC_019978.1_934430_935348_+	pfam06023, Csa1, CRISPR-associated exonuclease Csa1	NA|59aa|up_6|NC_019978.1_935436_935613_+	NA	WYL|332aa|up_5|NC_019978.1_938697_939693_+	pfam13280, WYL, WYL domain	cas3|746aa|up_4|NC_019978.1_940075_942313_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8a4|623aa|up_3|NC_019978.1_942327_944196_+	NA	cas7|320aa|up_2|NC_019978.1_944188_945148_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|227aa|up_1|NC_019978.1_945160_945841_+	NA	cas6|319aa|up_0|NC_019978.1_945854_946811_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|443aa|down_0|NC_019978.1_948587_949916_+	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|123aa|down_1|NC_019978.1_949933_950302_+	pfam06133, Com_YlbF, Control of competence regulator ComK, YlbF/YmcA	NA|879aa|down_2|NC_019978.1_950432_953069_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|612aa|down_3|NC_019978.1_953214_955050_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|308aa|down_4|NC_019978.1_955072_955996_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|109aa|down_5|NC_019978.1_956024_956351_+	NA	NA|325aa|down_6|NC_019978.1_956444_957419_+	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|200aa|down_7|NC_019978.1_957444_958044_+	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	NA|164aa|down_8|NC_019978.1_958111_958603_+	NA	NA|68aa|down_9|NC_019978.1_958614_958818_+	NA
