assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000320385.2_ASM32038v2	NC_019845	Sinorhizobium meliloti GR4, complete genome	1	172348-172494	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,RT	Orphan	TCTCCCCGCATGCGGGGAGAAGGG	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,csa3,RT	NA,NA	NA|243aa|up_9|NC_019845.2_161383_162112_+	COG5461, COG5461, Type IV pili component [Cell motility and secretion]	NA|429aa|up_8|NC_019845.2_162134_163421_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|467aa|up_7|NC_019845.2_163551_164952_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|337aa|up_6|NC_019845.2_165010_166021_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|328aa|up_5|NC_019845.2_166028_167012_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|388aa|up_4|NC_019845.2_167240_168404_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|270aa|up_3|NC_019845.2_168661_169471_-	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|464aa|up_2|NC_019845.2_169601_170993_+	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|115aa|up_1|NC_019845.2_171080_171425_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|285aa|up_0|NC_019845.2_171433_172288_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|320aa|down_0|NC_019845.2_172524_173484_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|543aa|down_1|NC_019845.2_173494_175123_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|378aa|down_2|NC_019845.2_175131_176265_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|361aa|down_3|NC_019845.2_176264_177347_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|620aa|down_4|NC_019845.2_177527_179387_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|down_5|NC_019845.2_179678_180746_+	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|127aa|down_6|NC_019845.2_180866_181247_+	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|340aa|down_7|NC_019845.2_181308_182328_+	PRK00292, glk, glucokinase; Provisional	NA|602aa|down_8|NC_019845.2_182436_184242_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|273aa|down_9|NC_019845.2_184259_185078_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_000320385.2_ASM32038v2	NC_019845	Sinorhizobium meliloti GR4, complete genome	2	1101959-1102072	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,RT	Orphan	CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|52aa|up_4|NC_019845.2_1097288_1097444_-,NA|59aa|up_3|NC_019845.2_1097481_1097658_-,NA	NA|987aa|up_9|NC_019845.2_1086054_1089015_+	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|773aa|up_8|NC_019845.2_1089025_1091344_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|885aa|up_7|NC_019845.2_1091706_1094361_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|313aa|up_6|NC_019845.2_1094786_1095725_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|430aa|up_5|NC_019845.2_1095734_1097024_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|52aa|up_4|NC_019845.2_1097288_1097444_-	NA	NA|59aa|up_3|NC_019845.2_1097481_1097658_-	NA	NA|287aa|up_2|NC_019845.2_1097796_1098657_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|430aa|up_1|NC_019845.2_1098729_1100019_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|555aa|up_0|NC_019845.2_1100288_1101953_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|333aa|down_0|NC_019845.2_1102517_1103516_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|296aa|down_1|NC_019845.2_1103736_1104624_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|338aa|down_2|NC_019845.2_1104713_1105727_-	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein	NA|134aa|down_3|NC_019845.2_1105827_1106229_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|309aa|down_4|NC_019845.2_1106367_1107294_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|496aa|down_5|NC_019845.2_1107309_1108797_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|340aa|down_6|NC_019845.2_1108789_1109809_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|319aa|down_7|NC_019845.2_1109904_1110861_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|501aa|down_8|NC_019845.2_1110889_1112392_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|107aa|down_9|NC_019845.2_1112471_1112792_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]
GCF_000320385.2_ASM32038v2	NC_019845	Sinorhizobium meliloti GR4, complete genome	3	1985840-1985952	3	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,RT	Orphan	CCCTCATTCCTGTGCTTGTCACAGGAAT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA,NA|301aa|down_2|NC_019845.2_1988639_1989542_+	NA|246aa|up_9|NC_019845.2_1973657_1974395_+	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|215aa|up_8|NC_019845.2_1974552_1975197_+	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_7|NC_019845.2_1975364_1976492_+	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|228aa|up_6|NC_019845.2_1976515_1977199_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|274aa|up_5|NC_019845.2_1977496_1978318_-	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|398aa|up_4|NC_019845.2_1978689_1979883_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|341aa|up_3|NC_019845.2_1979980_1981003_+	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|276aa|up_2|NC_019845.2_1981013_1981841_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|561aa|up_1|NC_019845.2_1981843_1983526_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|640aa|up_0|NC_019845.2_1983794_1985714_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|141aa|down_0|NC_019845.2_1986340_1986763_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|578aa|down_1|NC_019845.2_1986764_1988498_+	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|301aa|down_2|NC_019845.2_1988639_1989542_+	NA	NA|132aa|down_3|NC_019845.2_1989563_1989959_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|458aa|down_4|NC_019845.2_1990094_1991468_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|464aa|down_5|NC_019845.2_1991700_1993092_-	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|181aa|down_6|NC_019845.2_1993296_1993839_-	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|232aa|down_7|NC_019845.2_1993950_1994646_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|228aa|down_8|NC_019845.2_1994865_1995549_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|632aa|down_9|NC_019845.2_1995581_1997477_-	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000320385.2_ASM32038v2	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1	651235-651352	1	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|181aa|up_4|NC_019849.2_640495_641038_-,NA|309aa|up_2|NC_019849.2_645464_646391_-,NA|131aa|down_0|NC_019849.2_655475_655868_-,NA|133aa|down_3|NC_019849.2_657968_658367_-	NA|297aa|up_9|NC_019849.2_633226_634117_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NC_019849.2_634316_634940_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NC_019849.2_634936_635914_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NC_019849.2_635910_638136_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NC_019849.2_638216_639998_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NC_019849.2_640495_641038_-	NA	NA|445aa|up_3|NC_019849.2_643985_645320_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|309aa|up_2|NC_019849.2_645464_646391_-	NA	NA|414aa|up_1|NC_019849.2_646415_647657_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NC_019849.2_647735_648653_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NC_019849.2_655475_655868_-	NA	NA|384aa|down_1|NC_019849.2_655958_657110_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NC_019849.2_657097_657880_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NC_019849.2_657968_658367_-	NA	NA|1113aa|down_4|NC_019849.2_658492_661831_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NC_019849.2_662015_664058_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NC_019849.2_664063_665227_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NC_019849.2_665316_666339_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NC_019849.2_667044_668502_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NC_019849.2_668498_669773_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_000320385.2_ASM32038v2	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	2	651442-651541	2	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|181aa|up_4|NC_019849.2_640495_641038_-,NA|309aa|up_2|NC_019849.2_645464_646391_-,NA|131aa|down_0|NC_019849.2_655475_655868_-,NA|133aa|down_3|NC_019849.2_657968_658367_-	NA|297aa|up_9|NC_019849.2_633226_634117_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NC_019849.2_634316_634940_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NC_019849.2_634936_635914_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NC_019849.2_635910_638136_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NC_019849.2_638216_639998_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NC_019849.2_640495_641038_-	NA	NA|445aa|up_3|NC_019849.2_643985_645320_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|309aa|up_2|NC_019849.2_645464_646391_-	NA	NA|414aa|up_1|NC_019849.2_646415_647657_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NC_019849.2_647735_648653_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NC_019849.2_655475_655868_-	NA	NA|384aa|down_1|NC_019849.2_655958_657110_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NC_019849.2_657097_657880_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NC_019849.2_657968_658367_-	NA	NA|1113aa|down_4|NC_019849.2_658492_661831_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NC_019849.2_662015_664058_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NC_019849.2_664063_665227_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NC_019849.2_665316_666339_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NC_019849.2_667044_668502_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NC_019849.2_668498_669773_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_000320385.2_ASM32038v2	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	3	651616-651735	3	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|181aa|up_4|NC_019849.2_640495_641038_-,NA|309aa|up_2|NC_019849.2_645464_646391_-,NA|131aa|down_0|NC_019849.2_655475_655868_-,NA|133aa|down_3|NC_019849.2_657968_658367_-	NA|297aa|up_9|NC_019849.2_633226_634117_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NC_019849.2_634316_634940_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NC_019849.2_634936_635914_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NC_019849.2_635910_638136_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NC_019849.2_638216_639998_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NC_019849.2_640495_641038_-	NA	NA|445aa|up_3|NC_019849.2_643985_645320_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|309aa|up_2|NC_019849.2_645464_646391_-	NA	NA|414aa|up_1|NC_019849.2_646415_647657_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NC_019849.2_647735_648653_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NC_019849.2_655475_655868_-	NA	NA|384aa|down_1|NC_019849.2_655958_657110_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NC_019849.2_657097_657880_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NC_019849.2_657968_658367_-	NA	NA|1113aa|down_4|NC_019849.2_658492_661831_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NC_019849.2_662015_664058_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NC_019849.2_664063_665227_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NC_019849.2_665316_666339_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NC_019849.2_667044_668502_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NC_019849.2_668498_669773_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
