assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	1	1220996-1221069	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|237aa|up_0|NC_019382.1_1220141_1220852_-,NA	NA|496aa|up_9|NC_019382.1_1211602_1213090_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_8|NC_019382.1_1213214_1213358_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|325aa|up_7|NC_019382.1_1213354_1214329_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|425aa|up_6|NC_019382.1_1214393_1215668_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NC_019382.1_1215771_1216965_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NC_019382.1_1216961_1217615_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NC_019382.1_1217611_1219048_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NC_019382.1_1219035_1219395_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NC_019382.1_1219387_1220131_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NC_019382.1_1220141_1220852_-	NA	NA|441aa|down_0|NC_019382.1_1221219_1222542_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NC_019382.1_1222860_1223682_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NC_019382.1_1223688_1224942_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NC_019382.1_1225105_1225678_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NC_019382.1_1225717_1227547_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NC_019382.1_1227509_1228571_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NC_019382.1_1228608_1229070_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NC_019382.1_1229154_1229901_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NC_019382.1_1229897_1231397_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1077aa|down_9|NC_019382.1_1231393_1234624_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	2	1414060-1414209	1	CRT	no		csa3,DEDDh,cas3,DinG	Orphan	CTGCCAGGGCCGCTGCCA	18	3	8	1414078-1414107|1414078-1414107|1414078-1414107|1414078-1414107|1414078-1414107|1414078-1414107|1414126-1414143|1414162-1414191	NC_019382.1_5216966-5216937|NC_019382.1_5216978-5216949|NC_019382.1_5217002-5216973|NC_019382.1_5218843-5218872|NC_019382.1_5261196-5261225|NC_019382.1_5216990-5216961|NC_019382.1_5216918-5216901|NC_019382.1_5216882-5216853	NA	3	3	Orphan	csa3,DEDDh,cas3,DinG	NA|257aa|up_7|NC_019382.1_1408231_1409002_+,NA|49aa|up_5|NC_019382.1_1409555_1409702_-,NA|85aa|up_4|NC_019382.1_1409982_1410237_+,NA|230aa|up_3|NC_019382.1_1410254_1410944_-,NA|94aa|up_2|NC_019382.1_1410942_1411224_+,NA|125aa|up_1|NC_019382.1_1411265_1411640_+,NA|70aa|down_0|NC_019382.1_1414284_1414494_+,NA|126aa|down_1|NC_019382.1_1414496_1414874_+,NA|61aa|down_2|NC_019382.1_1414870_1415053_+,NA|103aa|down_5|NC_019382.1_1417377_1417686_+,NA|151aa|down_6|NC_019382.1_1417682_1418135_+,NA|425aa|down_7|NC_019382.1_1418285_1419560_+,NA|84aa|down_8|NC_019382.1_1419549_1419801_+,NA|83aa|down_9|NC_019382.1_1419793_1420042_+	NA|77aa|up_9|NC_019382.1_1406739_1406970_-	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|353aa|up_8|NC_019382.1_1407041_1408100_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|257aa|up_7|NC_019382.1_1408231_1409002_+	NA	NA|161aa|up_6|NC_019382.1_1409014_1409497_+	pfam01850, PIN, PIN domain	NA|49aa|up_5|NC_019382.1_1409555_1409702_-	NA	NA|85aa|up_4|NC_019382.1_1409982_1410237_+	NA	NA|230aa|up_3|NC_019382.1_1410254_1410944_-	NA	NA|94aa|up_2|NC_019382.1_1410942_1411224_+	NA	NA|125aa|up_1|NC_019382.1_1411265_1411640_+	NA	NA|375aa|up_0|NC_019382.1_1412502_1413627_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|70aa|down_0|NC_019382.1_1414284_1414494_+	NA	NA|126aa|down_1|NC_019382.1_1414496_1414874_+	NA	NA|61aa|down_2|NC_019382.1_1414870_1415053_+	NA	NA|329aa|down_3|NC_019382.1_1415056_1416043_+	pfam03837, RecT, RecT family	NA|216aa|down_4|NC_019382.1_1416039_1416687_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|103aa|down_5|NC_019382.1_1417377_1417686_+	NA	NA|151aa|down_6|NC_019382.1_1417682_1418135_+	NA	NA|425aa|down_7|NC_019382.1_1418285_1419560_+	NA	NA|84aa|down_8|NC_019382.1_1419549_1419801_+	NA	NA|83aa|down_9|NC_019382.1_1419793_1420042_+	NA
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	3	1520299-1520422	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	41	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|208aa|up_2|NC_019382.1_1517913_1518537_-,NA|439aa|up_1|NC_019382.1_1518533_1519850_-,NA|88aa|up_0|NC_019382.1_1519846_1520110_-,NA|111aa|down_9|NC_019382.1_1528289_1528622_+	NA|236aa|up_9|NC_019382.1_1510940_1511648_-	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|299aa|up_8|NC_019382.1_1511647_1512544_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|282aa|up_7|NC_019382.1_1512554_1513400_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|539aa|up_6|NC_019382.1_1513396_1515013_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|471aa|up_5|NC_019382.1_1515009_1516422_-	pfam00263, Secretin, Bacterial type II and III secretion system protein	NA|282aa|up_4|NC_019382.1_1516418_1517264_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|219aa|up_3|NC_019382.1_1517260_1517917_-	PRK14852, PRK14852, hypothetical protein; Provisional	NA|208aa|up_2|NC_019382.1_1517913_1518537_-	NA	NA|439aa|up_1|NC_019382.1_1518533_1519850_-	NA	NA|88aa|up_0|NC_019382.1_1519846_1520110_-	NA	NA|44aa|down_0|NC_019382.1_1520467_1520599_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|232aa|down_1|NC_019382.1_1520625_1521321_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|179aa|down_2|NC_019382.1_1521504_1522041_-	PRK01250, PRK01250, inorganic diphosphatase	NA|532aa|down_3|NC_019382.1_1522069_1523665_-	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|395aa|down_4|NC_019382.1_1523668_1524853_-	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed	NA|263aa|down_5|NC_019382.1_1524890_1525679_-	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|315aa|down_6|NC_019382.1_1525711_1526656_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|240aa|down_7|NC_019382.1_1526774_1527494_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|232aa|down_8|NC_019382.1_1527652_1528348_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|111aa|down_9|NC_019382.1_1528289_1528622_+	NA
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	4	2426000-2426074	3	CRISPRCasFinder	no	csa3	csa3,DEDDh,cas3,DinG	Type I-A	TGGCCCATGGCATGGGCTCGCCCA	24	1	1	2426024-2426050	NC_019382.1_2425974-2426000	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|478aa|up_9|NC_019382.1_2415173_2416607_+,NA|265aa|up_4|NC_019382.1_2420386_2421181_-,NA|472aa|up_3|NC_019382.1_2421778_2423194_-,NA|350aa|down_3|NC_019382.1_2429114_2430164_+	NA|478aa|up_9|NC_019382.1_2415173_2416607_+	NA	NA|150aa|up_8|NC_019382.1_2416609_2417059_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|148aa|up_7|NC_019382.1_2417055_2417499_-	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain	NA|306aa|up_6|NC_019382.1_2417607_2418525_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|499aa|up_5|NC_019382.1_2418734_2420231_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|265aa|up_4|NC_019382.1_2420386_2421181_-	NA	NA|472aa|up_3|NC_019382.1_2421778_2423194_-	NA	NA|299aa|up_2|NC_019382.1_2423377_2424274_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|295aa|up_1|NC_019382.1_2424381_2425266_+	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|207aa|up_0|NC_019382.1_2425321_2425942_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|246aa|down_0|NC_019382.1_2426326_2427064_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|389aa|down_1|NC_019382.1_2427277_2428444_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|216aa|down_2|NC_019382.1_2428446_2429094_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|350aa|down_3|NC_019382.1_2429114_2430164_+	NA	NA|379aa|down_4|NC_019382.1_2430193_2431330_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|322aa|down_5|NC_019382.1_2431373_2432339_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|427aa|down_6|NC_019382.1_2432379_2433660_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	csa3|109aa|down_7|NC_019382.1_2433656_2433983_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|431aa|down_8|NC_019382.1_2434135_2435428_+	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|490aa|down_9|NC_019382.1_2435779_2437249_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	5	2543159-2543267	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GTGCCTGTCCCTACGCGGACAGGCACC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|553aa|up_9|NC_019382.1_2532284_2533943_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|374aa|up_8|NC_019382.1_2534015_2535137_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|294aa|up_7|NC_019382.1_2535249_2536131_+	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold	NA|324aa|up_6|NC_019382.1_2536223_2537195_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|160aa|up_5|NC_019382.1_2537317_2537797_+	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|326aa|up_4|NC_019382.1_2537777_2538755_-	pfam13387, DUF4105, Domain of unknown function (DUF4105)	NA|328aa|up_3|NC_019382.1_2539075_2540059_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|305aa|up_2|NC_019382.1_2540171_2541086_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|379aa|up_1|NC_019382.1_2541125_2542262_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|265aa|up_0|NC_019382.1_2542261_2543056_-	PRK06143, PRK06143, enoyl-CoA hydratase; Provisional	NA|393aa|down_0|NC_019382.1_2545263_2546442_+	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|335aa|down_1|NC_019382.1_2546504_2547509_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|200aa|down_2|NC_019382.1_2547641_2548241_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|407aa|down_3|NC_019382.1_2548257_2549478_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|52aa|down_4|NC_019382.1_2549505_2549661_-	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|166aa|down_5|NC_019382.1_2549757_2550255_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|421aa|down_6|NC_019382.1_2550638_2551901_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|325aa|down_7|NC_019382.1_2551914_2552889_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|286aa|down_8|NC_019382.1_2552947_2553805_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|285aa|down_9|NC_019382.1_2553810_2554665_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	6	2686457-2686542	5	CRISPRCasFinder	no	csa3	csa3,DEDDh,cas3,DinG	Type I-A	CTGTCCCCGCGGGGACAGGCACAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|333aa|up_9|NC_019382.1_2677755_2678754_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|167aa|up_8|NC_019382.1_2678811_2679312_-	PRK00202, nusB, transcription antitermination factor NusB	NA|176aa|up_7|NC_019382.1_2679283_2679811_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|392aa|up_6|NC_019382.1_2679824_2681000_-	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|266aa|up_5|NC_019382.1_2681145_2681943_+	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB	NA|276aa|up_4|NC_019382.1_2681948_2682776_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|336aa|up_3|NC_019382.1_2682924_2683932_+	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold	NA|257aa|up_2|NC_019382.1_2683934_2684705_+	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|297aa|up_1|NC_019382.1_2684701_2685592_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|274aa|up_0|NC_019382.1_2685588_2686410_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|533aa|down_0|NC_019382.1_2686648_2688247_+	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|407aa|down_1|NC_019382.1_2688293_2689514_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|207aa|down_2|NC_019382.1_2689589_2690210_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|170aa|down_3|NC_019382.1_2690230_2690740_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|84aa|down_4|NC_019382.1_2690794_2691046_+	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|406aa|down_5|NC_019382.1_2691042_2692260_+	pfam03594, BenE, Benzoate membrane transport protein	NA|129aa|down_6|NC_019382.1_2692267_2692654_-	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|840aa|down_7|NC_019382.1_2692650_2695170_-	PRK10833, PRK10833, putative assembly protein; Provisional	csa3|113aa|down_8|NC_019382.1_2695598_2695937_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|169aa|down_9|NC_019382.1_2695933_2696440_+	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	7	3679673-3679809	1	PILER-CR	no		csa3,DEDDh,cas3,DinG	Orphan	ATGTTTCACGTGAAACAA	18	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|144aa|up_9|NC_019382.1_3669914_3670346_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|178aa|up_8|NC_019382.1_3670409_3670943_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|127aa|up_7|NC_019382.1_3670952_3671333_-	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|397aa|up_6|NC_019382.1_3671571_3672762_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|334aa|up_5|NC_019382.1_3673357_3674359_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|306aa|up_4|NC_019382.1_3674351_3675269_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|269aa|up_3|NC_019382.1_3675312_3676119_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|266aa|up_2|NC_019382.1_3676125_3676923_-	pfam13614, AAA_31, AAA domain	NA|231aa|up_1|NC_019382.1_3676919_3677612_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|640aa|up_0|NC_019382.1_3677608_3679528_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|69aa|down_0|NC_019382.1_3681317_3681524_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|389aa|down_1|NC_019382.1_3681923_3683090_+	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|508aa|down_2|NC_019382.1_3683165_3684689_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|146aa|down_3|NC_019382.1_3684685_3685123_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|335aa|down_4|NC_019382.1_3685227_3686232_-	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|459aa|down_5|NC_019382.1_3686352_3687729_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|227aa|down_6|NC_019382.1_3687802_3688483_-	PRK15479, PRK15479, transcriptional regulator TctD	NA|425aa|down_7|NC_019382.1_3689040_3690315_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|451aa|down_8|NC_019382.1_3690259_3691612_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|529aa|down_9|NC_019382.1_3691728_3693315_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	8	4192388-4192471	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|295aa|up_9|NC_019382.1_4181678_4182563_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|188aa|up_8|NC_019382.1_4182549_4183113_+	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|651aa|up_7|NC_019382.1_4183126_4185079_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|379aa|up_6|NC_019382.1_4185075_4186212_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|352aa|up_5|NC_019382.1_4186237_4187293_-	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|498aa|up_4|NC_019382.1_4187303_4188797_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|192aa|up_3|NC_019382.1_4189009_4189585_-	PRK09480, slmA, division inhibitor protein; Provisional	NA|249aa|up_2|NC_019382.1_4189634_4190381_-	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|301aa|up_1|NC_019382.1_4190380_4191283_-	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|263aa|up_0|NC_019382.1_4191544_4192333_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|164aa|down_0|NC_019382.1_4192489_4192981_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|248aa|down_1|NC_019382.1_4192977_4193721_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|198aa|down_2|NC_019382.1_4193717_4194311_-	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|178aa|down_3|NC_019382.1_4194319_4194853_-	PRK14685, PRK14685, hypothetical protein; Provisional	NA|313aa|down_4|NC_019382.1_4194919_4195858_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|191aa|down_5|NC_019382.1_4195854_4196427_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|317aa|down_6|NC_019382.1_4196423_4197374_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|291aa|down_7|NC_019382.1_4197370_4198243_-	PRK05416, PRK05416, RNase adapter RapZ	NA|205aa|down_8|NC_019382.1_4198552_4199167_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|429aa|down_9|NC_019382.1_4199177_4200464_+	pfam00034, Cytochrom_C, Cytochrome c
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	9	4464842-4464935	7	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|540aa|up_9|NC_019382.1_4456211_4457831_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|132aa|up_8|NC_019382.1_4457790_4458186_-	pfam04138, GtrA, GtrA-like protein	NA|334aa|up_7|NC_019382.1_4458120_4459122_+	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|152aa|up_6|NC_019382.1_4459118_4459574_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|308aa|up_5|NC_019382.1_4459579_4460503_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|220aa|up_4|NC_019382.1_4460592_4461252_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|305aa|up_3|NC_019382.1_4461248_4462163_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|482aa|up_2|NC_019382.1_4462306_4463752_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NC_019382.1_4463851_4464196_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NC_019382.1_4464284_4464755_+	pfam00582, Usp, Universal stress protein family	NA|708aa|down_0|NC_019382.1_4465165_4467289_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|173aa|down_1|NC_019382.1_4467285_4467804_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|down_2|NC_019382.1_4467914_4468670_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|411aa|down_3|NC_019382.1_4468865_4470098_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|262aa|down_4|NC_019382.1_4470090_4470876_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|324aa|down_5|NC_019382.1_4470942_4471914_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|326aa|down_6|NC_019382.1_4471924_4472902_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|391aa|down_7|NC_019382.1_4473027_4474200_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|398aa|down_8|NC_019382.1_4475285_4476479_+	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|545aa|down_9|NC_019382.1_4476527_4478162_-	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	10	4674060-4674144	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|248aa|up_9|NC_019382.1_4663009_4663753_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|348aa|up_8|NC_019382.1_4663796_4664840_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|701aa|up_7|NC_019382.1_4665010_4667113_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|465aa|up_6|NC_019382.1_4667109_4668504_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|319aa|up_5|NC_019382.1_4668530_4669487_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|164aa|up_4|NC_019382.1_4669506_4669998_-	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|452aa|up_3|NC_019382.1_4669994_4671350_-	TIGR01942, pcnB, poly(A) polymerase	NA|233aa|up_2|NC_019382.1_4671350_4672049_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|234aa|up_1|NC_019382.1_4672045_4672747_-	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|350aa|up_0|NC_019382.1_4672999_4674049_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|314aa|down_0|NC_019382.1_4674154_4675096_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|629aa|down_1|NC_019382.1_4675092_4676979_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|207aa|down_2|NC_019382.1_4677083_4677704_+	PRK10847, PRK10847, DedA family protein	NA|462aa|down_3|NC_019382.1_4677845_4679231_-	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|179aa|down_4|NC_019382.1_4679161_4679698_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|464aa|down_5|NC_019382.1_4679849_4681241_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|327aa|down_6|NC_019382.1_4681256_4682237_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|328aa|down_7|NC_019382.1_4682372_4683356_+	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|300aa|down_8|NC_019382.1_4683420_4684320_-	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|585aa|down_9|NC_019382.1_4684426_4686181_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	11	5218848-5218985	2	CRT	no		csa3,DEDDh,cas3,DinG	Orphan	GCTGCCTGGGACGCTGCC	18	3	7	5218866-5218883|5218866-5218883|5218866-5218883|5218866-5218883|5218902-5218931|5218902-5218931|5218950-5218967	NC_019382.1_5216967-5216950|NC_019382.1_5216979-5216962|NC_019382.1_5216955-5216938|NC_019382.1_5216991-5216974|NC_019382.1_5216943-5216914|NC_019382.1_5216907-5216878|NC_019382.1_5216871-5216854	NA	3	3	Orphan	csa3,DEDDh,cas3,DinG	NA|88aa|up_9|NC_019382.1_5211836_5212100_-,NA|151aa|up_7|NC_019382.1_5212908_5213361_-,NA|103aa|up_6|NC_019382.1_5213357_5213666_-,NA|61aa|up_3|NC_019382.1_5215990_5216173_-,NA|126aa|up_2|NC_019382.1_5216169_5216547_-,NA|70aa|up_1|NC_019382.1_5216549_5216759_-,NA|70aa|down_0|NC_019382.1_5219061_5219271_+,NA|126aa|down_1|NC_019382.1_5219273_5219651_+,NA|61aa|down_2|NC_019382.1_5219647_5219830_+,NA|103aa|down_5|NC_019382.1_5222154_5222463_+,NA|151aa|down_6|NC_019382.1_5222459_5222912_+,NA|82aa|down_8|NC_019382.1_5224218_5224464_+	NA|88aa|up_9|NC_019382.1_5211836_5212100_-	NA	NA|277aa|up_8|NC_019382.1_5212096_5212927_-	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|151aa|up_7|NC_019382.1_5212908_5213361_-	NA	NA|103aa|up_6|NC_019382.1_5213357_5213666_-	NA	NA|216aa|up_5|NC_019382.1_5214356_5215004_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|329aa|up_4|NC_019382.1_5215000_5215987_-	pfam03837, RecT, RecT family	NA|61aa|up_3|NC_019382.1_5215990_5216173_-	NA	NA|126aa|up_2|NC_019382.1_5216169_5216547_-	NA	NA|70aa|up_1|NC_019382.1_5216549_5216759_-	NA	NA|404aa|up_0|NC_019382.1_5217216_5218428_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|70aa|down_0|NC_019382.1_5219061_5219271_+	NA	NA|126aa|down_1|NC_019382.1_5219273_5219651_+	NA	NA|61aa|down_2|NC_019382.1_5219647_5219830_+	NA	NA|329aa|down_3|NC_019382.1_5219833_5220820_+	pfam03837, RecT, RecT family	NA|216aa|down_4|NC_019382.1_5220816_5221464_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|103aa|down_5|NC_019382.1_5222154_5222463_+	NA	NA|151aa|down_6|NC_019382.1_5222459_5222912_+	NA	NA|420aa|down_7|NC_019382.1_5222893_5224153_+	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|82aa|down_8|NC_019382.1_5224218_5224464_+	NA	NA|77aa|down_9|NC_019382.1_5224512_5224743_+	pfam13986, DUF4224, Domain of unknown function (DUF4224)
GCF_000318015.1_ASM31801v1	NC_019382	Bordetella bronchiseptica 253, complete genome	12	5261201-5261338	3	CRT	no		csa3,DEDDh,cas3,DinG	Orphan	GCTGCCTGGGACGCTGCC	18	3	7	5261219-5261236|5261219-5261236|5261219-5261236|5261219-5261236|5261255-5261284|5261255-5261284|5261303-5261320	NC_019382.1_5216967-5216950|NC_019382.1_5216979-5216962|NC_019382.1_5216955-5216938|NC_019382.1_5216991-5216974|NC_019382.1_5216943-5216914|NC_019382.1_5216907-5216878|NC_019382.1_5216871-5216854	NA	3	3	Orphan	csa3,DEDDh,cas3,DinG	NA|60aa|up_8|NC_019382.1_5253515_5253695_-,NA|63aa|up_7|NC_019382.1_5254141_5254330_+,NA|62aa|up_6|NC_019382.1_5254445_5254631_+,NA|139aa|up_5|NC_019382.1_5254899_5255316_-,NA|257aa|up_2|NC_019382.1_5257376_5258147_+,NA|152aa|up_0|NC_019382.1_5259143_5259599_+,NA|70aa|down_0|NC_019382.1_5261414_5261624_+,NA|126aa|down_1|NC_019382.1_5261626_5262004_+,NA|61aa|down_2|NC_019382.1_5262000_5262183_+	NA|281aa|up_9|NC_019382.1_5252534_5253377_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|60aa|up_8|NC_019382.1_5253515_5253695_-	NA	NA|63aa|up_7|NC_019382.1_5254141_5254330_+	NA	NA|62aa|up_6|NC_019382.1_5254445_5254631_+	NA	NA|139aa|up_5|NC_019382.1_5254899_5255316_-	NA	NA|80aa|up_4|NC_019382.1_5255317_5255557_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|239aa|up_3|NC_019382.1_5255642_5256359_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|257aa|up_2|NC_019382.1_5257376_5258147_+	NA	NA|161aa|up_1|NC_019382.1_5258159_5258642_+	pfam01850, PIN, PIN domain	NA|152aa|up_0|NC_019382.1_5259143_5259599_+	NA	NA|70aa|down_0|NC_019382.1_5261414_5261624_+	NA	NA|126aa|down_1|NC_019382.1_5261626_5262004_+	NA	NA|61aa|down_2|NC_019382.1_5262000_5262183_+	NA	NA|329aa|down_3|NC_019382.1_5262186_5263173_+	pfam03837, RecT, RecT family	NA|216aa|down_4|NC_019382.1_5263169_5263817_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
