The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_019382	Bordetella bronchiseptica 253, complete genome	5264383	3384	51777	5264383	protease,terminase,tail	Bordetella_phage(32.61%)	66	NA	NA
WP_010926420.1|3384_3693_+	DNA-binding protein	NA	A0A1S5NNI6	Burkholderia_phage	47.8	3.9e-14
WP_010926421.1|3695_4103_+	hypothetical protein	NA	A0A0H5AUD0	Pseudomonas_phage	62.4	2.6e-29
WP_010926422.1|4102_4552_+	hypothetical protein	NA	A0A2I7RKD9	Vibrio_phage	39.2	1.7e-21
WP_015063593.1|4548_4956_+	DUF1364 family protein	NA	Q3HR02	Burkholderia_phage	41.0	4.1e-19
WP_033452948.1|4957_5173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033470402.1|5215_6028_+	helix-turn-helix domain-containing protein	NA	A0A1B0YZZ0	Pseudomonas_phage	45.4	9.4e-15
WP_015063595.1|6027_6783_+	hypothetical protein	NA	U6C6D0	Ralstonia_phage	38.0	1.7e-26
WP_014905401.1|6779_7256_+	phage protein	NA	NA	NA	NA	NA
WP_015063596.1|7375_8194_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	43.8	1.2e-22
WP_015063597.1|8393_8834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004566297.1|9152_9524_+	DNA-binding protein	NA	A0A090DCM3	Clostridium_phage	36.7	6.2e-06
WP_004566296.1|9510_10788_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.2	9.2e-150
WP_004566295.1|10790_12209_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	41.5	1.2e-97
WP_004566294.1|12237_13290_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.8	6.3e-96
WP_033448595.1|13295_13538_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	51.9	1.9e-16
WP_004566293.1|13661_14264_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	44.3	5.5e-28
WP_004566292.1|14290_15259_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.7	6.6e-124
WP_003813425.1|15268_15526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015063598.1|15588_16071_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.5e-12
WP_010931440.1|16072_16273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015063599.1|16272_16668_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	6.0e-07
WP_015039674.1|16664_17063_+	hypothetical protein	NA	A0A088FBW9	Salmonella_phage	37.8	2.6e-18
WP_015039675.1|17059_17482_+	DUF4128 domain-containing protein	NA	I6PDJ8	Cronobacter_phage	29.2	2.6e-08
WP_010931436.1|17489_17990_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_015039676.1|18244_18763_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|18772_19102_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_015039677.1|19119_19410_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	43.0	2.0e-15
WP_015063600.1|19435_21871_+|tail	phage tail tape measure protein	tail	A0A1V0E821	Vibrio_phage	34.8	1.2e-97
WP_010926426.1|21880_22240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033448593.1|22306_22840_+	DUF1833 family protein	NA	A0A0B5A6T7	Achromobacter_phage	56.5	1.2e-47
WP_004566282.1|22836_23226_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	49.2	3.3e-34
WP_164928100.1|23200_24193_-	pentapeptide repeat-containing protein	NA	A0A2P0VPH6	Ralstonia_phage	50.0	2.3e-07
WP_161782183.1|24367_24514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050461212.1|24572_25055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063602.1|25067_25838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033474780.1|27069_27339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152546241.1|27340_27757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161781156.1|28024_28693_-	peptidase S24	NA	Q94MM0	Bordetella_phage	53.5	1.4e-37
WP_161781157.1|28824_29061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152546241.1|29062_29479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164928084.1|29747_29933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063607.1|30048_30237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063608.1|30312_30687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033452912.1|30683_30863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143280017.1|31001_31844_+	hypothetical protein	NA	Q3HQZ6	Burkholderia_phage	37.0	2.0e-31
WP_015063609.1|31840_32173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015063610.1|32169_33111_+	AAA family ATPase	NA	Q5G8S8	Enterobacteria_phage	37.2	1.0e-49
WP_015063611.1|33107_33749_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	49.7	2.3e-32
WP_161788409.1|33909_34176_+	helix-turn-helix domain-containing protein	NA	Q775B7	Bordetella_phage	51.3	2.4e-12
WP_161788410.1|34206_34770_+|terminase	terminase	terminase	Q775B8	Bordetella_phage	82.1	4.6e-69
WP_033452914.1|34775_36389_+|terminase	terminase	terminase	Q775B9	Bordetella_phage	85.0	8.1e-276
WP_033452915.1|36432_36897_+	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	93.5	1.0e-74
WP_033452916.1|36893_37352_+	hypothetical protein	NA	Q775C1	Bordetella_phage	91.4	2.4e-68
WP_161788411.1|37445_37691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063619.1|37734_39402_+	hypothetical protein	NA	T1S9Z7	Salmonella_phage	47.6	7.3e-139
WP_015063620.1|39450_39801_+	hypothetical protein	NA	Q775C5	Bordetella_phage	92.2	1.5e-54
WP_033452917.1|39772_40447_+|protease	protease	protease	Q775C6	Bordetella_phage	91.0	1.4e-88
WP_015063622.1|40460_41456_+	hypothetical protein	NA	Q775C7	Bordetella_phage	97.9	4.0e-185
WP_015063623.1|41474_41897_+	hypothetical protein	NA	Q775C8	Bordetella_phage	80.7	4.8e-55
WP_033452919.1|41909_42116_+	hypothetical protein	NA	Q775C9	Bordetella_phage	83.8	3.0e-26
WP_033452920.1|42202_42874_+	hypothetical protein	NA	Q775D0	Bordetella_phage	94.6	8.9e-120
WP_164928085.1|42873_44919_+	hypothetical protein	NA	Q775D1	Bordetella_phage	93.4	0.0e+00
WP_033474704.1|44929_45523_+	phage protein	NA	Q775D2	Bordetella_phage	47.0	5.4e-20
WP_143280016.1|45534_47130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033452923.1|47116_50506_+	hypothetical protein	NA	M1IDU6	Pelagibacter_phage	23.4	1.5e-50
WP_015063629.1|50664_51777_+|tail	phage tail fiber protein	tail	Q775D5	Bordetella_phage	68.0	3.8e-51
>prophage 2
NC_019382	Bordetella bronchiseptica 253, complete genome	5264383	876530	884596	5264383	tRNA	uncultured_Mediterranean_phage(28.57%)	9	NA	NA
WP_003811022.1|876530_877415_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_010928874.1|877432_878212_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811017.1|878196_878955_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	6.2e-69
WP_023852762.1|879092_879728_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003811013.1|879772_880813_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.6	9.3e-92
WP_015063884.1|880947_882240_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	2.2e-66
WP_003811009.1|882445_883471_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811007.1|883606_883990_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811006.1|884008_884596_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	46.8	2.1e-16
>prophage 3
NC_019382	Bordetella bronchiseptica 253, complete genome	5264383	1385245	1408100	5264383	protease,terminase	Bordetella_phage(65.0%)	28	NA	NA
WP_004566281.1|1385245_1389202_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	41.1	1.2e-219
WP_004566282.1|1389194_1389584_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	49.2	3.3e-34
WP_164928088.1|1389837_1390425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015064022.1|1390427_1391021_-	phage protein	NA	Q775D2	Bordetella_phage	47.0	8.4e-21
WP_015064023.1|1391031_1393077_-	hypothetical protein	NA	Q775D1	Bordetella_phage	93.4	0.0e+00
WP_033452920.1|1393076_1393748_-	hypothetical protein	NA	Q775D0	Bordetella_phage	94.6	8.9e-120
WP_033452919.1|1393834_1394041_-	hypothetical protein	NA	Q775C9	Bordetella_phage	83.8	3.0e-26
WP_015064024.1|1394053_1394476_-	hypothetical protein	NA	Q775C8	Bordetella_phage	81.4	1.3e-55
WP_015063622.1|1394494_1395490_-	hypothetical protein	NA	Q775C7	Bordetella_phage	97.9	4.0e-185
WP_033452917.1|1395503_1396178_-|protease	protease	protease	Q775C6	Bordetella_phage	91.0	1.4e-88
WP_015063620.1|1396149_1396500_-	hypothetical protein	NA	Q775C5	Bordetella_phage	92.2	1.5e-54
WP_015063619.1|1396548_1398216_-	hypothetical protein	NA	T1S9Z7	Salmonella_phage	47.6	7.3e-139
WP_161788411.1|1398259_1398505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033452916.1|1398598_1399057_-	hypothetical protein	NA	Q775C1	Bordetella_phage	91.4	2.4e-68
WP_033452915.1|1399053_1399518_-	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	93.5	1.0e-74
WP_033452914.1|1399561_1401175_-|terminase	terminase	terminase	Q775B9	Bordetella_phage	85.0	8.1e-276
WP_161788410.1|1401180_1401744_-|terminase	terminase	terminase	Q775B8	Bordetella_phage	82.1	4.6e-69
WP_161788409.1|1401774_1402041_-	helix-turn-helix domain-containing protein	NA	Q775B7	Bordetella_phage	51.3	2.4e-12
WP_015063611.1|1402201_1402843_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	49.7	2.3e-32
WP_015063610.1|1402839_1403781_-	AAA family ATPase	NA	Q5G8S8	Enterobacteria_phage	37.2	1.0e-49
WP_015063609.1|1403777_1404110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143280017.1|1404106_1404949_-	hypothetical protein	NA	Q3HQZ6	Burkholderia_phage	37.0	2.0e-31
WP_033452912.1|1405087_1405267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033452911.1|1405713_1405902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033452910.1|1406017_1406203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152552450.1|1406413_1406710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033453294.1|1406739_1406970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164928089.1|1407041_1408100_+	S24 family peptidase	NA	A0A1B0VRI7	Pseudomonas_phage	36.7	2.4e-10
>prophage 4
NC_019382	Bordetella bronchiseptica 253, complete genome	5264383	5207910	5221464	5264383		Pseudomonas_phage(20.0%)	23	NA	NA
WP_010926852.1|5207910_5209134_-	DUF3596 domain-containing protein	NA	A0A1W6JTA0	Pseudomonas_phage	37.7	1.7e-63
WP_003813470.1|5209130_5209385_-	DUF1233 family excisionase	NA	NA	NA	NA	NA
WP_010926850.1|5209497_5209746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926849.1|5209738_5209990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050451048.1|5209979_5211254_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	35.5	4.1e-25
WP_157966175.1|5211310_5211565_+	DUF1488 family protein	NA	NA	NA	NA	NA
WP_010926231.1|5211612_5211840_-	hypothetical protein	NA	A0A125RNQ4	Pseudomonas_phage	49.2	1.4e-13
WP_033472958.1|5211836_5212100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050451049.1|5212096_5212927_-	DUF551 domain-containing protein	NA	H2BDF1	Pseudomonas_virus	54.4	3.4e-12
WP_033453231.1|5212908_5213361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161782557.1|5213357_5213666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926408.1|5214356_5215004_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	1.2e-31
WP_010926409.1|5215000_5215987_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.8	4.0e-68
WP_010926410.1|5215990_5216173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|5216169_5216547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926412.1|5216549_5216759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164928098.1|5217216_5218428_+	pentapeptide repeat-containing protein	NA	A0A2P0VPH6	Ralstonia_phage	45.7	2.1e-10
WP_015065189.1|5218466_5219042_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	67.8	2.3e-39
WP_010926412.1|5219061_5219271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|5219273_5219651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|5219647_5219830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926409.1|5219833_5220820_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.8	4.0e-68
WP_010926408.1|5220816_5221464_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	1.2e-31
>prophage 5
NC_019382	Bordetella bronchiseptica 253, complete genome	5264383	5233872	5256359	5264383	protease,terminase	Bordetella_phage(68.42%)	27	NA	NA
WP_033452923.1|5233872_5237262_-	hypothetical protein	NA	M1IDU6	Pelagibacter_phage	23.4	1.5e-50
WP_143280016.1|5237248_5238844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015064022.1|5238855_5239449_-	phage protein	NA	Q775D2	Bordetella_phage	47.0	8.4e-21
WP_015064023.1|5239459_5241505_-	hypothetical protein	NA	Q775D1	Bordetella_phage	93.4	0.0e+00
WP_033452920.1|5241504_5242176_-	hypothetical protein	NA	Q775D0	Bordetella_phage	94.6	8.9e-120
WP_033452919.1|5242262_5242469_-	hypothetical protein	NA	Q775C9	Bordetella_phage	83.8	3.0e-26
WP_015064024.1|5242481_5242904_-	hypothetical protein	NA	Q775C8	Bordetella_phage	81.4	1.3e-55
WP_015063622.1|5242922_5243918_-	hypothetical protein	NA	Q775C7	Bordetella_phage	97.9	4.0e-185
WP_033452917.1|5243931_5244606_-|protease	protease	protease	Q775C6	Bordetella_phage	91.0	1.4e-88
WP_015063620.1|5244577_5244928_-	hypothetical protein	NA	Q775C5	Bordetella_phage	92.2	1.5e-54
WP_015063619.1|5244976_5246644_-	hypothetical protein	NA	T1S9Z7	Salmonella_phage	47.6	7.3e-139
WP_161788411.1|5246687_5246933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033452916.1|5247026_5247485_-	hypothetical protein	NA	Q775C1	Bordetella_phage	91.4	2.4e-68
WP_033452915.1|5247481_5247946_-	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	93.5	1.0e-74
WP_033452914.1|5247989_5249603_-|terminase	terminase	terminase	Q775B9	Bordetella_phage	85.0	8.1e-276
WP_161788410.1|5249608_5250172_-|terminase	terminase	terminase	Q775B8	Bordetella_phage	82.1	4.6e-69
WP_161788409.1|5250202_5250469_-	helix-turn-helix domain-containing protein	NA	Q775B7	Bordetella_phage	51.3	2.4e-12
WP_015063611.1|5250629_5251271_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	49.7	2.3e-32
WP_015063610.1|5251267_5252209_-	AAA family ATPase	NA	Q5G8S8	Enterobacteria_phage	37.2	1.0e-49
WP_015063609.1|5252205_5252538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143280017.1|5252534_5253377_-	hypothetical protein	NA	Q3HQZ6	Burkholderia_phage	37.0	2.0e-31
WP_033452912.1|5253515_5253695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033452911.1|5254141_5254330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033452910.1|5254445_5254631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152546241.1|5254899_5255316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080702913.1|5255317_5255557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033459053.1|5255642_5256359_+	helix-turn-helix transcriptional regulator	NA	Q8W6P8	Burkholderia_virus	61.9	3.4e-24
