bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	30	0	0	1	30	1751160	1751189	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-08	49.1	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751160-1751189	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	30	0	0	1	30	1751388	1751417	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-08	49.1	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751388-1751417	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751172	1751201	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751172-1751201	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751304	1751333	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751304-1751333	CCTGGCAGCGTACCAGGCAGCGTCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751316	1751345	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751316-1751345	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	93.33	30	2	0	1	30	1751040	1751069	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-06	42.8	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751040-1751069	CCTGGCAGCGGCCCTGGCAGCGTCCCAGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	93.33	30	2	0	1	30	1751052	1751081	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-06	42.8	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751052-1751081	CCTGGCAGCGTCCCAGGCAGCGGCCCTGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	93.33	30	2	0	1	30	1751328	1751357	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-06	42.8	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751328-1751357	CCAGGCAGCGTCCCAGGCAGCGGCCCAGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.1|2259073|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	93.33	30	2	0	1	30	1751340	1751369	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-06	42.8	1.0	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751340-1751369	CCAGGCAGCGGCCCAGGCAGCGTCCCAGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.2|2259121|54|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	54	0	0	1	54	1751220	1751273	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	7e-19	87.2	1.0	ACTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751220-1751273	ACTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCACTGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.2|2259121|54|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.30	54	2	0	1	54	1751088	1751141	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	6e-17	80.8	1.0	ACTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751088-1751141	ACTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCACTGGCAGCGGCCCTGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.3|2259193|66|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.97	66	2	0	1	66	1751376	1751441	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-22	99.9	1.0	ACTGGCAGCGGCCCTGGCAGCGTCCCAGGCAGCGTCCCAGGCAGCGGCCCTGGCAGCGGCACTGGC	1751376-1751441	ACTGGCAGCGGCCCTGGCAGCGTCCCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGC	8
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.4|2259277|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	42	0	0	1	42	1751256	1751297	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-13	68.2	1.0	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751256-1751297	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.4|2259277|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	97.62	42	1	0	1	42	1751076	1751117	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-12	65.0	1.0	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751076-1751117	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCCCTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.4|2259277|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	97.62	42	1	0	1	42	1751112	1751153	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-12	65.0	1.0	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751112-1751153	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCATCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.4|2259277|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	97.62	42	1	0	1	42	1751208	1751249	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-12	65.0	1.0	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751208-1751249	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCCCTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.4|2259277|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	97.62	42	1	0	1	42	1751232	1751273	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-12	65.0	1.0	CCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCACTGGC	1751232-1751273	CCTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	30	0	0	1	30	1751172	1751201	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-08	49.1	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751172-1751201	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	30	0	0	1	30	1751316	1751345	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-08	49.1	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751316-1751345	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751160	1751189	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751160-1751189	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751328	1751357	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751328-1751357	CCAGGCAGCGTCCCAGGCAGCGGCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751340	1751369	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751340-1751369	CCAGGCAGCGGCCCAGGCAGCGTCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	96.67	30	1	0	1	30	1751388	1751417	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-07	46.0	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751388-1751417	CCTGGCAGCGTCCCAGGCAGCGTCCCAGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	93.33	30	2	0	1	30	1751184	1751213	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-06	42.8	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751184-1751213	CCAGGCAGCGTCCCAGGCAGCGGCCCTGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.5|2259337|30|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	93.33	30	2	0	1	30	1751304	1751333	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	3e-06	42.8	1.0	CCAGGCAGCGTCCCAGGCAGCGTCCCAGGC	1751304-1751333	CCTGGCAGCGTACCAGGCAGCGTCCCAGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	18	0	0	1	18	1751364	1751381	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.017	30.1	1.0	CCAGGCAGCGGCACTGGC	1751364-1751381	CCAGGCAGCGGCACTGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	18	0	0	1	18	1751412	1751429	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.017	30.1	1.0	CCAGGCAGCGGCACTGGC	1751412-1751429	CCAGGCAGCGGCACTGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751064	1751081	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751064-1751081	CCAGGCAGCGGCCCTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751076	1751093	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751076-1751093	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751112	1751129	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751112-1751129	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751196	1751213	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751196-1751213	CCAGGCAGCGGCCCTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751208	1751225	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751208-1751225	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751256	1751273	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751256-1751273	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751280	1751297	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751280-1751297	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	1751448	1751465	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	1751448-1751465	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.6|2259385|18|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	94.44	18	1	0	1	18	2259469	2259486	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	0.15	26.9	1.0	CCAGGCAGCGGCACTGGC	2259469-2259486	CCTGGCAGCGGCACTGGC	1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.7|2259421|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	100.00	42	0	0	1	42	1751400	1751441	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-13	68.2	1.0	CCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGC	1751400-1751441	CCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGC	0
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.7|2259421|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	95.24	42	2	0	1	42	1751184	1751225	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-11	61.8	1.0	CCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGC	1751184-1751225	CCAGGCAGCGTCCCAGGCAGCGGCCCTGGCAGCGGCACTGGC	2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4.7|2259421|42|NC_018828|CRT	NC_018828.1	Bordetella parapertussis Bpp5, complete genome	95.24	42	2	0	1	42	1751352	1751393	473727-473826|1222624-1222728|1325598-1325684|2259055-2259480|3189247-3189343|3327794-3327869|4158443-4158536|4427579-4427662|4510102-4510182	2e-11	61.8	1.0	CCAGGCAGCGTCCCAGGCAGCGGCACTGGCATCGGCACTGGC	1751352-1751393	CCAGGCAGCGTCCCAGGCAGCGGCACTGGCAGCGGCCCTGGC	2
