assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	1	473727-473826	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GCCTGTCCCTGCCGGGGAGCGACA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|397aa|up_9|NC_018828.1_454962_456153_+	PRK10537, PRK10537, voltage-gated potassium channel protein	NA|132aa|up_8|NC_018828.1_456160_456556_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|234aa|up_7|NC_018828.1_456725_457427_+	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain	NA|291aa|up_6|NC_018828.1_457689_458562_+	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|112aa|up_5|NC_018828.1_458637_458973_-	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|382aa|up_4|NC_018828.1_459113_460259_-	cd06812, PLPDE_III_DSD_D-TA_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1	NA|220aa|up_3|NC_018828.1_460286_460946_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|61aa|up_2|NC_018828.1_461882_462065_+	pfam12167, Arm-DNA-bind_2, Arm DNA-binding domain	NA|3558aa|up_1|NC_018828.1_462363_473037_+	PRK15319, PRK15319, fibronectin-binding autotransporter adhesin ShdA	NA|194aa|up_0|NC_018828.1_473088_473670_+	cd20298, cupin_UAH, ureidoglycolate amidohydrolase (UAH) and related proteins, cupin domain	NA|326aa|down_0|NC_018828.1_474134_475112_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|247aa|down_1|NC_018828.1_476384_477125_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|255aa|down_2|NC_018828.1_477148_477913_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|112aa|down_3|NC_018828.1_477957_478293_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|330aa|down_4|NC_018828.1_479124_480114_+	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|418aa|down_5|NC_018828.1_480205_481459_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|159aa|down_6|NC_018828.1_482553_483030_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|411aa|down_7|NC_018828.1_483026_484259_+	TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase	NA|322aa|down_8|NC_018828.1_484322_485288_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|329aa|down_9|NC_018828.1_485274_486261_-	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	2	1222624-1222728	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	CGCTGCGCCAGCTTGCTGCCCCCCAGGGGGGCTTT	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|365aa|up_9|NC_018828.1_1213983_1215078_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|291aa|up_8|NC_018828.1_1215168_1216041_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|280aa|up_7|NC_018828.1_1216062_1216902_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|506aa|up_6|NC_018828.1_1216977_1218495_+	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|367aa|up_5|NC_018828.1_1218591_1219692_-	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|141aa|up_4|NC_018828.1_1219708_1220131_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|71aa|up_3|NC_018828.1_1220153_1220366_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_2|NC_018828.1_1220412_1221333_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|250aa|up_1|NC_018828.1_1221515_1222265_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|110aa|up_0|NC_018828.1_1222267_1222597_+	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|451aa|down_0|NC_018828.1_1222954_1224307_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|128aa|down_1|NC_018828.1_1224318_1224702_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|267aa|down_2|NC_018828.1_1224763_1225564_+	pfam07264, EI24, Etoposide-induced protein 2	NA|271aa|down_3|NC_018828.1_1225616_1226429_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|283aa|down_4|NC_018828.1_1226587_1227436_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|326aa|down_5|NC_018828.1_1232122_1233100_-	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|193aa|down_6|NC_018828.1_1233485_1234064_+	TIGR01841, hypothetical_protein, phasin family protein	NA|350aa|down_7|NC_018828.1_1234211_1235261_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|242aa|down_8|NC_018828.1_1235301_1236027_-	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|255aa|down_9|NC_018828.1_1236063_1236828_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	3	1325598-1325684	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	AGTGTGCCTGTCCCCGCAGGGACAG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|79aa|up_1|NC_018828.1_1322984_1323221_+,NA|106aa|down_4|NC_018828.1_1331586_1331904_-	NA|683aa|up_9|NC_018828.1_1312792_1314841_+	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|111aa|up_8|NC_018828.1_1314854_1315187_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|229aa|up_7|NC_018828.1_1315183_1315870_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|320aa|up_6|NC_018828.1_1315856_1316816_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|790aa|up_5|NC_018828.1_1316848_1319218_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|211aa|up_4|NC_018828.1_1319217_1319850_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|447aa|up_3|NC_018828.1_1319951_1321292_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|452aa|up_2|NC_018828.1_1321338_1322694_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|79aa|up_1|NC_018828.1_1322984_1323221_+	NA	NA|407aa|up_0|NC_018828.1_1323365_1324586_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|215aa|down_0|NC_018828.1_1325715_1326360_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|296aa|down_1|NC_018828.1_1326370_1327258_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|362aa|down_2|NC_018828.1_1327305_1328391_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|441aa|down_3|NC_018828.1_1330163_1331486_-	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|106aa|down_4|NC_018828.1_1331586_1331904_-	NA	NA|438aa|down_5|NC_018828.1_1332037_1333351_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|159aa|down_6|NC_018828.1_1335526_1336003_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|201aa|down_7|NC_018828.1_1336355_1336958_-	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|211aa|down_8|NC_018828.1_1336976_1337609_+	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|629aa|down_9|NC_018828.1_1337846_1339733_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	4	2259055-2259480	1	CRT	no		csa3,DEDDh,cas3,DinG	Orphan	AGCGGCCCTGGCAGCGNC	18	7	39	2259073-2259102|2259073-2259102|2259073-2259102|2259073-2259102|2259073-2259102|2259073-2259102|2259073-2259102|2259073-2259102|2259073-2259102|2259121-2259174|2259121-2259174|2259193-2259258|2259277-2259318|2259277-2259318|2259277-2259318|2259277-2259318|2259277-2259318|2259337-2259366|2259337-2259366|2259337-2259366|2259337-2259366|2259337-2259366|2259337-2259366|2259337-2259366|2259337-2259366|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259385-2259402|2259421-2259462|2259421-2259462|2259421-2259462	NC_018828.1_1751160-1751189|NC_018828.1_1751388-1751417|NC_018828.1_1751172-1751201|NC_018828.1_1751304-1751333|NC_018828.1_1751316-1751345|NC_018828.1_1751040-1751069|NC_018828.1_1751052-1751081|NC_018828.1_1751328-1751357|NC_018828.1_1751340-1751369|NC_018828.1_1751220-1751273|NC_018828.1_1751088-1751141|NC_018828.1_1751376-1751441|NC_018828.1_1751256-1751297|NC_018828.1_1751076-1751117|NC_018828.1_1751112-1751153|NC_018828.1_1751208-1751249|NC_018828.1_1751232-1751273|NC_018828.1_1751172-1751201|NC_018828.1_1751316-1751345|NC_018828.1_1751160-1751189|NC_018828.1_1751328-1751357|NC_018828.1_1751340-1751369|NC_018828.1_1751388-1751417|NC_018828.1_1751184-1751213|NC_018828.1_1751304-1751333|NC_018828.1_1751364-1751381|NC_018828.1_1751412-1751429|NC_018828.1_1751064-1751081|NC_018828.1_1751076-1751093|NC_018828.1_1751112-1751129|NC_018828.1_1751196-1751213|NC_018828.1_1751208-1751225|NC_018828.1_1751256-1751273|NC_018828.1_1751280-1751297|NC_018828.1_1751448-1751465|NC_018828.1_2259469-2259486|NC_018828.1_1751400-1751441|NC_018828.1_1751184-1751225|NC_018828.1_1751352-1751393	NA	7	7	Orphan	csa3,DEDDh,cas3,DinG	NA|120aa|up_7|NC_018828.1_2255200_2255560_-,NA|127aa|up_5|NC_018828.1_2256049_2256430_-,NA|61aa|up_2|NC_018828.1_2258182_2258365_-,NA|126aa|up_1|NC_018828.1_2258361_2258739_-,NA|70aa|up_0|NC_018828.1_2258741_2258951_-,NA|214aa|down_1|NC_018828.1_2261267_2261909_-,NA|332aa|down_2|NC_018828.1_2262002_2262998_-,NA|230aa|down_5|NC_018828.1_2264435_2265125_+,NA|85aa|down_6|NC_018828.1_2265142_2265397_-,NA|125aa|down_7|NC_018828.1_2265733_2266108_+	NA|330aa|up_9|NC_018828.1_2253901_2254891_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|67aa|up_8|NC_018828.1_2254887_2255088_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|120aa|up_7|NC_018828.1_2255200_2255560_-	NA	NA|168aa|up_6|NC_018828.1_2255556_2256060_-	pfam13392, HNH_3, HNH endonuclease	NA|127aa|up_5|NC_018828.1_2256049_2256430_-	NA	NA|216aa|up_4|NC_018828.1_2256548_2257196_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|329aa|up_3|NC_018828.1_2257192_2258179_-	pfam03837, RecT, RecT family	NA|61aa|up_2|NC_018828.1_2258182_2258365_-	NA	NA|126aa|up_1|NC_018828.1_2258361_2258739_-	NA	NA|70aa|up_0|NC_018828.1_2258741_2258951_-	NA	NA|330aa|down_0|NC_018828.1_2259908_2260898_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|214aa|down_1|NC_018828.1_2261267_2261909_-	NA	NA|332aa|down_2|NC_018828.1_2262002_2262998_-	NA	NA|151aa|down_3|NC_018828.1_2263699_2264152_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|83aa|down_4|NC_018828.1_2264194_2264443_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_5|NC_018828.1_2264435_2265125_+	NA	NA|85aa|down_6|NC_018828.1_2265142_2265397_-	NA	NA|125aa|down_7|NC_018828.1_2265733_2266108_+	NA	NA|264aa|down_8|NC_018828.1_2266104_2266896_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|252aa|down_9|NC_018828.1_2266895_2267651_+	pfam11417, Inhibitor_G39P, Loader and inhibitor of phage G40P
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	5	3189247-3189343	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GTGCCTGTCCCGGCGGGGACAGGCACCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|100aa|up_1|NC_018828.1_3186465_3186765_-,NA	NA|425aa|up_9|NC_018828.1_3174951_3176226_-	pfam06864, PAP_PilO, Pilin accessory protein (PilO)	NA|526aa|up_8|NC_018828.1_3176229_3177807_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|407aa|up_7|NC_018828.1_3178687_3179908_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|452aa|up_6|NC_018828.1_3179954_3181310_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|545aa|up_5|NC_018828.1_3181306_3182941_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|277aa|up_4|NC_018828.1_3182933_3183764_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|up_3|NC_018828.1_3183781_3184726_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|525aa|up_2|NC_018828.1_3184778_3186353_-	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|100aa|up_1|NC_018828.1_3186465_3186765_-	NA	NA|317aa|up_0|NC_018828.1_3188222_3189173_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|446aa|down_0|NC_018828.1_3189441_3190779_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|419aa|down_1|NC_018828.1_3190783_3192040_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|349aa|down_2|NC_018828.1_3192235_3193282_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|123aa|down_3|NC_018828.1_3193339_3193708_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|291aa|down_4|NC_018828.1_3193838_3194711_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|301aa|down_5|NC_018828.1_3194787_3195690_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|340aa|down_6|NC_018828.1_3195694_3196714_-	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase	NA|400aa|down_7|NC_018828.1_3196710_3197910_-	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|341aa|down_8|NC_018828.1_3197910_3198933_-	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional	NA|309aa|down_9|NC_018828.1_3199182_3200109_-	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	6	3327794-3327869	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GCCTGTCCCGGCGGGGACAGATACC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|237aa|up_0|NC_018828.1_3326926_3327637_-,NA	NA|221aa|up_9|NC_018828.1_3317715_3318378_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|48aa|up_8|NC_018828.1_3319999_3320143_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|325aa|up_7|NC_018828.1_3320139_3321114_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|425aa|up_6|NC_018828.1_3321178_3322453_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NC_018828.1_3322556_3323750_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NC_018828.1_3323746_3324400_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NC_018828.1_3324396_3325833_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NC_018828.1_3325820_3326180_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NC_018828.1_3326172_3326916_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NC_018828.1_3326926_3327637_-	NA	NA|441aa|down_0|NC_018828.1_3328012_3329335_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NC_018828.1_3329653_3330475_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NC_018828.1_3330481_3331735_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NC_018828.1_3331898_3332471_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NC_018828.1_3332510_3334340_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NC_018828.1_3334302_3335364_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NC_018828.1_3335402_3335864_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NC_018828.1_3335948_3336695_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NC_018828.1_3336691_3338191_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1077aa|down_9|NC_018828.1_3338187_3341418_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	7	4158443-4158536	6	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,DinG	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|545aa|up_9|NC_018828.1_4145306_4146941_+	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|343aa|up_8|NC_018828.1_4148122_4149151_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NC_018828.1_4149177_4150350_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NC_018828.1_4150475_4151453_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NC_018828.1_4151463_4152435_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NC_018828.1_4152501_4153287_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NC_018828.1_4153279_4154512_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NC_018828.1_4154707_4155463_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NC_018828.1_4155573_4156092_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NC_018828.1_4156088_4158212_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|407aa|down_0|NC_018828.1_4158654_4159875_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_1|NC_018828.1_4159937_4160408_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_2|NC_018828.1_4160496_4160841_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|482aa|down_3|NC_018828.1_4160940_4162386_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_4|NC_018828.1_4162529_4163444_+	pfam00892, EamA, EamA-like transporter family	NA|220aa|down_5|NC_018828.1_4163440_4164100_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|301aa|down_6|NC_018828.1_4164189_4165092_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_7|NC_018828.1_4165097_4165553_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|334aa|down_8|NC_018828.1_4165549_4166551_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|132aa|down_9|NC_018828.1_4166485_4166881_+	pfam04138, GtrA, GtrA-like protein
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	8	4427579-4427662	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|309aa|up_9|NC_018828.1_4418580_4419507_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|205aa|up_8|NC_018828.1_4420882_4421497_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|NC_018828.1_4421806_4422679_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NC_018828.1_4422675_4423626_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|NC_018828.1_4423622_4424195_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|NC_018828.1_4424191_4425130_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|NC_018828.1_4425196_4425730_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|198aa|up_2|NC_018828.1_4425738_4426332_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|NC_018828.1_4426328_4427072_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|NC_018828.1_4427068_4427560_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|NC_018828.1_4427674_4428463_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|NC_018828.1_4428724_4429627_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|NC_018828.1_4429626_4430373_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|NC_018828.1_4430422_4430998_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|NC_018828.1_4431210_4432704_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|NC_018828.1_4432714_4433770_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|NC_018828.1_4433795_4434932_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|NC_018828.1_4434928_4436881_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|NC_018828.1_4436894_4437458_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|NC_018828.1_4437444_4438329_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCF_000317935.1_ASM31793v1	NC_018828	Bordetella parapertussis Bpp5, complete genome	9	4510102-4510182	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GTGCCTGTCCCCGCGGGGACAGGCACCT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|79aa|up_6|NC_018828.1_4500777_4501014_+,NA	NA|246aa|up_9|NC_018828.1_4498062_4498800_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|274aa|up_8|NC_018828.1_4498879_4499701_-	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|287aa|up_7|NC_018828.1_4499789_4500650_+	cd01171, YXKO-related, B	NA|79aa|up_6|NC_018828.1_4500777_4501014_+	NA	NA|543aa|up_5|NC_018828.1_4501310_4502939_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|323aa|up_4|NC_018828.1_4503062_4504031_+	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup	NA|326aa|up_3|NC_018828.1_4504089_4505067_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|up_2|NC_018828.1_4505074_4505995_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|337aa|up_1|NC_018828.1_4506973_4507984_+	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|302aa|up_0|NC_018828.1_4507986_4508892_+	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|690aa|down_0|NC_018828.1_4510201_4512271_-	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|701aa|down_1|NC_018828.1_4512313_4514416_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|359aa|down_2|NC_018828.1_4514722_4515799_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|294aa|down_3|NC_018828.1_4515874_4516756_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|141aa|down_4|NC_018828.1_4516938_4517361_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|467aa|down_5|NC_018828.1_4517370_4518771_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|302aa|down_6|NC_018828.1_4518813_4519719_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|514aa|down_7|NC_018828.1_4519817_4521359_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|180aa|down_8|NC_018828.1_4521393_4521933_-	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|157aa|down_9|NC_018828.1_4521945_4522416_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated
