assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000316685.1_ASM31668v1	NC_019680	Synechococcus sp. PCC 6312, complete sequence	1	1105084-1107482	1,1,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACT,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	36,36,36,37,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	26,33,33,26,26	33	Orphan	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	NA|147aa|up_6|NC_019680.1_1098775_1099216_-,NA|154aa|up_0|NC_019680.1_1104478_1104940_+,NA|83aa|down_0|NC_019680.1_1107757_1108006_-,NA|320aa|down_1|NC_019680.1_1108140_1109100_-,NA|95aa|down_6|NC_019680.1_1112818_1113103_+,NA|176aa|down_8|NC_019680.1_1113885_1114413_+,NA|127aa|down_9|NC_019680.1_1114402_1114783_+	NA|280aa|up_9|NC_019680.1_1096201_1097041_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|128aa|up_8|NC_019680.1_1097037_1097421_+	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|391aa|up_7|NC_019680.1_1097575_1098748_+	PRK07366, PRK07366, LL-diaminopimelate aminotransferase	NA|147aa|up_6|NC_019680.1_1098775_1099216_-	NA	NA|293aa|up_5|NC_019680.1_1099298_1100177_-	cd03514, CrtR_beta-carotene-hydroxylase, Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae	NA|135aa|up_4|NC_019680.1_1100542_1100947_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|723aa|up_3|NC_019680.1_1101123_1103292_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|79aa|up_2|NC_019680.1_1103614_1103851_+	pfam13592, HTH_33, Winged helix-turn helix	NA|152aa|up_1|NC_019680.1_1103962_1104418_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|154aa|up_0|NC_019680.1_1104478_1104940_+	NA	NA|83aa|down_0|NC_019680.1_1107757_1108006_-	NA	NA|320aa|down_1|NC_019680.1_1108140_1109100_-	NA	NA|193aa|down_2|NC_019680.1_1109096_1109675_-	smart00271, DnaJ, DnaJ molecular chaperone homology domain	NA|109aa|down_3|NC_019680.1_1109824_1110151_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_4|NC_019680.1_1110297_1110519_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|755aa|down_5|NC_019680.1_1110528_1112793_+	pfam00665, rve, Integrase core domain	NA|95aa|down_6|NC_019680.1_1112818_1113103_+	NA	NA|241aa|down_7|NC_019680.1_1113154_1113877_+	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]	NA|176aa|down_8|NC_019680.1_1113885_1114413_+	NA	NA|127aa|down_9|NC_019680.1_1114402_1114783_+	NA
GCF_000316685.1_ASM31668v1	NC_019680	Synechococcus sp. PCC 6312, complete sequence	2	1147365-1150114	4,2,2,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas8b3,cas3,cas6,WYL	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	Unclear	GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC,GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	36,36,36,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	38,38,38,38	38	Unclear	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	NA|257aa|up_7|NC_019680.1_1136999_1137770_+,NA|195aa|up_6|NC_019680.1_1137793_1138378_+,NA|182aa|up_4|NC_019680.1_1141687_1142233_+,NA|400aa|up_3|NC_019680.1_1142229_1143429_+,NA|86aa|up_2|NC_019680.1_1143428_1143686_+,NA|631aa|up_1|NC_019680.1_1143685_1145578_+,NA|79aa|down_3|NC_019680.1_1152711_1152948_-,NA|88aa|down_9|NC_019680.1_1159124_1159388_-	NA|147aa|up_9|NC_019680.1_1136116_1136557_+	pfam07030, DUF1320, Protein of unknown function (DUF1320)	NA|150aa|up_8|NC_019680.1_1136557_1137007_+	pfam09646, Gp37, Gp37 protein	NA|257aa|up_7|NC_019680.1_1136999_1137770_+	NA	NA|195aa|up_6|NC_019680.1_1137793_1138378_+	NA	NA|1107aa|up_5|NC_019680.1_1138370_1141691_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|182aa|up_4|NC_019680.1_1141687_1142233_+	NA	NA|400aa|up_3|NC_019680.1_1142229_1143429_+	NA	NA|86aa|up_2|NC_019680.1_1143428_1143686_+	NA	NA|631aa|up_1|NC_019680.1_1143685_1145578_+	NA	NA|516aa|up_0|NC_019680.1_1145640_1147188_+	pfam02487, CLN3, CLN3 protein	cas2|98aa|down_0|NC_019680.1_1150366_1150660_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|555aa|down_1|NC_019680.1_1150661_1152326_-	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	NA|89aa|down_2|NC_019680.1_1152448_1152715_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|79aa|down_3|NC_019680.1_1152711_1152948_-	NA	cas5|215aa|down_4|NC_019680.1_1153072_1153717_-	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|332aa|down_5|NC_019680.1_1153713_1154709_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b3|513aa|down_6|NC_019680.1_1154744_1156283_-	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas3|813aa|down_7|NC_019680.1_1156273_1158712_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|140aa|down_8|NC_019680.1_1158708_1159128_-	pfam13470, PIN_3, PIN domain	NA|88aa|down_9|NC_019680.1_1159124_1159388_-	NA
GCF_000316685.1_ASM31668v1	NC_019680	Synechococcus sp. PCC 6312, complete sequence	3	2775103-2775462	3	CRISPRCasFinder	no		csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	Orphan	GTCGTAGGTGTAGCGGGTAGTCCGGTTGAGTGGATC	36	0	0	NA	NA	NA	3	3	Orphan	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	NA|69aa|up_9|NC_019680.1_2764298_2764505_-,NA|61aa|up_8|NC_019680.1_2764747_2764930_-,NA|85aa|up_4|NC_019680.1_2768815_2769070_+,NA|171aa|down_4|NC_019680.1_2780896_2781409_-,NA|156aa|down_5|NC_019680.1_2781974_2782442_-,NA|229aa|down_7|NC_019680.1_2798752_2799439_-,NA|56aa|down_8|NC_019680.1_2799754_2799922_+	NA|69aa|up_9|NC_019680.1_2764298_2764505_-	NA	NA|61aa|up_8|NC_019680.1_2764747_2764930_-	NA	NA|170aa|up_7|NC_019680.1_2766555_2767065_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|244aa|up_6|NC_019680.1_2767203_2767935_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|256aa|up_5|NC_019680.1_2767983_2768751_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|85aa|up_4|NC_019680.1_2768815_2769070_+	NA	NA|137aa|up_3|NC_019680.1_2769156_2769567_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|158aa|up_2|NC_019680.1_2769803_2770277_+	pfam09900, DUF2127, Predicted membrane protein (DUF2127)	NA|426aa|up_1|NC_019680.1_2770254_2771532_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|227aa|up_0|NC_019680.1_2771537_2772218_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|250aa|down_0|NC_019680.1_2776959_2777709_-	smart00860, SMI1_KNR4, SMI1 / KNR4 family	NA|738aa|down_1|NC_019680.1_2777729_2779943_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|80aa|down_2|NC_019680.1_2780014_2780254_-	pfam03513, Cloacin_immun, Cloacin immunity protein	NA|131aa|down_3|NC_019680.1_2780269_2780662_-	pfam09000, Cytotoxic, Cytotoxic	NA|171aa|down_4|NC_019680.1_2780896_2781409_-	NA	NA|156aa|down_5|NC_019680.1_2781974_2782442_-	NA	NA|192aa|down_6|NC_019680.1_2782912_2783488_-	pfam15542, Ntox50, Bacterial toxin 50	NA|229aa|down_7|NC_019680.1_2798752_2799439_-	NA	NA|56aa|down_8|NC_019680.1_2799754_2799922_+	NA	NA|62aa|down_9|NC_019680.1_2800222_2800408_+	pfam01609, DDE_Tnp_1, Transposase DDE domain
GCF_000316685.1_ASM31668v1	NC_019680	Synechococcus sp. PCC 6312, complete sequence	4	2809537-2815131	6,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	Type III-B,Type III-D,Type III-A,Type III-C	GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG,GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG,GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	36,36,36	0	0	NA	NA	NA:NA:NA	77,77,77	77	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	NA|353aa|up_8|NC_019680.1_2800674_2801734_+,NA|56aa|up_7|NC_019680.1_2801818_2801986_-,NA|58aa|up_5|NC_019680.1_2805631_2805805_-,NA|98aa|up_4|NC_019680.1_2806036_2806330_-,NA|89aa|up_3|NC_019680.1_2806448_2806715_-,NA|97aa|up_0|NC_019680.1_2808708_2808999_-,csx18|92aa|down_2|NC_019680.1_2816616_2816892_-,NA|511aa|down_3|NC_019680.1_2817014_2818547_-,cmr5gr11|135aa|down_7|NC_019680.1_2821333_2821738_-	NA|62aa|up_9|NC_019680.1_2800222_2800408_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|353aa|up_8|NC_019680.1_2800674_2801734_+	NA	NA|56aa|up_7|NC_019680.1_2801818_2801986_-	NA	NA|1099aa|up_6|NC_019680.1_2802298_2805595_-	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair]	NA|58aa|up_5|NC_019680.1_2805631_2805805_-	NA	NA|98aa|up_4|NC_019680.1_2806036_2806330_-	NA	NA|89aa|up_3|NC_019680.1_2806448_2806715_-	NA	NA|512aa|up_2|NC_019680.1_2806772_2808308_-	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair]	NA|136aa|up_1|NC_019680.1_2808301_2808709_-	pfam13671, AAA_33, AAA domain	NA|97aa|up_0|NC_019680.1_2808708_2808999_-	NA	cas2|93aa|down_0|NC_019680.1_2815318_2815597_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|328aa|down_1|NC_019680.1_2815604_2816588_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csx18|92aa|down_2|NC_019680.1_2816616_2816892_-	NA	NA|511aa|down_3|NC_019680.1_2817014_2818547_-	NA	NA|127aa|down_4|NC_019680.1_2818563_2818944_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|111aa|down_5|NC_019680.1_2818936_2819269_-	COG2442, COG2442, Uncharacterized conserved protein [Function unknown]	cmr6gr7|679aa|down_6|NC_019680.1_2819293_2821330_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|135aa|down_7|NC_019680.1_2821333_2821738_-	NA	cmr4gr7|265aa|down_8|NC_019680.1_2821801_2822596_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|390aa|down_9|NC_019680.1_2822607_2823777_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3
GCF_000316685.1_ASM31668v1	NC_019680	Synechococcus sp. PCC 6312, complete sequence	5	2842046-2842143	5	CRISPRCasFinder	no	cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	Type II-A,Type III-D,Type III-A,Type III-C, Type II-B,Type III-B, or Type II-C?	TCTTTAGTTAGATAGATTCCGAA	23	0	0	NA	NA	NA	1	1	TypeIII-D,TypeII-A,TypeIII-A,TypeIII-C,TypeIII-B,TypeII-B,orTypeII-C?	csa3,RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	NA|99aa|up_7|NC_019680.1_2836158_2836455_-,NA|50aa|up_6|NC_019680.1_2836722_2836872_-,NA|136aa|up_5|NC_019680.1_2837030_2837438_-,NA|67aa|up_4|NC_019680.1_2837669_2837870_-,NA|64aa|up_3|NC_019680.1_2838860_2839052_-,NA|67aa|up_2|NC_019680.1_2839776_2839977_-,NA|97aa|up_0|NC_019680.1_2841100_2841391_-,NA|56aa|down_1|NC_019680.1_2844256_2844424_-,NA|222aa|down_6|NC_019680.1_2849190_2849856_+,NA|206aa|down_7|NC_019680.1_2849864_2850482_+,NA|243aa|down_8|NC_019680.1_2850501_2851230_+,NA|249aa|down_9|NC_019680.1_2851286_2852033_+	c2c9_V-U4|381aa|up_9|NC_019680.1_2834602_2835745_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|134aa|up_8|NC_019680.1_2835794_2836196_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|99aa|up_7|NC_019680.1_2836158_2836455_-	NA	NA|50aa|up_6|NC_019680.1_2836722_2836872_-	NA	NA|136aa|up_5|NC_019680.1_2837030_2837438_-	NA	NA|67aa|up_4|NC_019680.1_2837669_2837870_-	NA	NA|64aa|up_3|NC_019680.1_2838860_2839052_-	NA	NA|67aa|up_2|NC_019680.1_2839776_2839977_-	NA	NA|123aa|up_1|NC_019680.1_2840143_2840512_-	pfam10686, DUF2493, Protein of unknown function (DUF2493)	NA|97aa|up_0|NC_019680.1_2841100_2841391_-	NA	NA|275aa|down_0|NC_019680.1_2843233_2844058_-	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase	NA|56aa|down_1|NC_019680.1_2844256_2844424_-	NA	NA|138aa|down_2|NC_019680.1_2844974_2845388_-	smart00731, SprT, SprT homologues	Cas9_archaeal|426aa|down_3|NC_019680.1_2846214_2847492_-	pfam14239, RRXRR, RRXRR protein	NA|111aa|down_4|NC_019680.1_2848070_2848403_-	PRK11761, cysM, cysteine synthase CysM	NA|132aa|down_5|NC_019680.1_2848492_2848888_-	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]	NA|222aa|down_6|NC_019680.1_2849190_2849856_+	NA	NA|206aa|down_7|NC_019680.1_2849864_2850482_+	NA	NA|243aa|down_8|NC_019680.1_2850501_2851230_+	NA	NA|249aa|down_9|NC_019680.1_2851286_2852033_+	NA
