assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	1	62891-63355	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	GTTGAAATCAACTTAAATCCCTATTAGGG----------ATTGAAAC,GTTGAAATCAACTTAAATCCCTATTAGGGATTGAAAC,GTTGAAATCAACTTAAATCCCTATTAGGGATTGAAAC	47,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B	5,5,6	6	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|122aa|up_8|NC_019678.1_51850_52216_-,NA|127aa|up_6|NC_019678.1_54860_55241_-,NA|171aa|up_4|NC_019678.1_57394_57907_-,NA|218aa|up_2|NC_019678.1_59725_60379_-,NA|108aa|down_2|NC_019678.1_65580_65904_+,NA|137aa|down_9|NC_019678.1_74569_74980_-	NA|291aa|up_9|NC_019678.1_50626_51499_-	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|122aa|up_8|NC_019678.1_51850_52216_-	NA	NA|671aa|up_7|NC_019678.1_52473_54486_-	cd07338, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|127aa|up_6|NC_019678.1_54860_55241_-	NA	NA|208aa|up_5|NC_019678.1_55411_56035_-	pfam06080, DUF938, Protein of unknown function (DUF938)	NA|171aa|up_4|NC_019678.1_57394_57907_-	NA	NA|376aa|up_3|NC_019678.1_58531_59659_-	pfam13395, HNH_4, HNH endonuclease	NA|218aa|up_2|NC_019678.1_59725_60379_-	NA	NA|203aa|up_1|NC_019678.1_61014_61623_+	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227)	NA|265aa|up_0|NC_019678.1_61785_62580_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|137aa|down_0|NC_019678.1_63594_64005_-	TIGR02588, TIGR02588, TIGR02588 family protein	NA|306aa|down_1|NC_019678.1_64001_64919_-	pfam09622, DUF2391, Putative integral membrane protein (DUF2391)	NA|108aa|down_2|NC_019678.1_65580_65904_+	NA	NA|161aa|down_3|NC_019678.1_66143_66626_-	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	NA|437aa|down_4|NC_019678.1_67355_68666_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|474aa|down_5|NC_019678.1_69183_70605_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|299aa|down_6|NC_019678.1_70909_71806_+	PRK07419, PRK07419, 2-carboxy-1,4-naphthoquinone phytyltransferase	NA|330aa|down_7|NC_019678.1_71987_72977_+	PRK02714, PRK02714, o-succinylbenzoate synthase	NA|488aa|down_8|NC_019678.1_72949_74413_+	PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed	NA|137aa|down_9|NC_019678.1_74569_74980_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	2	233441-233533	2	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GGGTGTGGATCATCAACTAACAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|185aa|up_9|NC_019678.1_225797_226352_+,NA|157aa|down_3|NC_019678.1_239016_239487_+,NA|347aa|down_6|NC_019678.1_241320_242361_-,NA|101aa|down_7|NC_019678.1_242496_242799_-,NA|99aa|down_8|NC_019678.1_242927_243224_-,NA|93aa|down_9|NC_019678.1_243472_243751_-	NA|185aa|up_9|NC_019678.1_225797_226352_+	NA	NA|168aa|up_8|NC_019678.1_226522_227026_-	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|172aa|up_7|NC_019678.1_227122_227638_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|385aa|up_6|NC_019678.1_227637_228792_-	PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional	NA|131aa|up_5|NC_019678.1_229044_229437_-	pfam03703, bPH_2, Bacterial PH domain	NA|141aa|up_4|NC_019678.1_229423_229846_-	PRK03031, rnpA, ribonuclease P protein component	NA|45aa|up_3|NC_019678.1_229881_230016_-	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed	NA|175aa|up_2|NC_019678.1_230201_230726_-	pfam10989, DUF2808, Protein of unknown function (DUF2808)	NA|387aa|up_1|NC_019678.1_231706_232867_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|96aa|up_0|NC_019678.1_233093_233381_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|467aa|down_0|NC_019678.1_233552_234953_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|946aa|down_1|NC_019678.1_235518_238356_+	pfam13424, TPR_12, Tetratricopeptide repeat	NA|30aa|down_2|NC_019678.1_238811_238901_-	pfam03742, PetN, PetN	NA|157aa|down_3|NC_019678.1_239016_239487_+	NA	DEDDh|182aa|down_4|NC_019678.1_239512_240058_+	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	NA|332aa|down_5|NC_019678.1_240274_241270_-	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|347aa|down_6|NC_019678.1_241320_242361_-	NA	NA|101aa|down_7|NC_019678.1_242496_242799_-	NA	NA|99aa|down_8|NC_019678.1_242927_243224_-	NA	NA|93aa|down_9|NC_019678.1_243472_243751_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	3	276315-276421	3	CRISPRCasFinder	no	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type I-D	CGAGTTTCAATCCCTGATAGGGATT	25	0	0	NA	NA	I-D,II-B	1	1	TypeI-D	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|130aa|up_8|NC_019678.1_263648_264038_-,NA|695aa|up_6|NC_019678.1_265368_267453_+,NA|213aa|up_4|NC_019678.1_269681_270320_-,NA|67aa|down_7|NC_019678.1_291146_291347_-	NA|219aa|up_9|NC_019678.1_262747_263404_+	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|130aa|up_8|NC_019678.1_263648_264038_-	NA	NA|300aa|up_7|NC_019678.1_264299_265199_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|695aa|up_6|NC_019678.1_265368_267453_+	NA	NA|502aa|up_5|NC_019678.1_267950_269456_-	TIGR02733, similar_to_to_phytoene_dehydrogenase, C-3',4' desaturase CrtD	NA|213aa|up_4|NC_019678.1_269681_270320_-	NA	NA|428aa|up_3|NC_019678.1_270758_272042_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|290aa|up_2|NC_019678.1_272228_273098_+	pfam03881, Fructosamin_kin, Fructosamine kinase	WYL|291aa|up_1|NC_019678.1_273164_274037_-	pfam13280, WYL, WYL domain	cas3|726aa|up_0|NC_019678.1_274136_276314_+	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain	cas10d|1138aa|down_0|NC_019678.1_276942_280356_+	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d	csc2gr7|348aa|down_1|NC_019678.1_280506_281550_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|244aa|down_2|NC_019678.1_281552_282284_+	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1	cas6|281aa|down_3|NC_019678.1_282517_283360_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas4|198aa|down_4|NC_019678.1_283597_284191_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|266aa|down_5|NC_019678.1_284290_285088_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|91aa|down_6|NC_019678.1_286459_286732_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|67aa|down_7|NC_019678.1_291146_291347_-	NA	NA|154aa|down_8|NC_019678.1_292224_292686_+	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins	NA|375aa|down_9|NC_019678.1_292963_294088_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	4	286960-291024	2,4,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type I-D	GTTGAAATCAACTTAAATCCCTATCAGGG----------ATTGAAAC,GTTGAAATCAACTTAAATCCCTATCAGGGATTGAAAC,GTTGAAATCAACTTAAATCCCTATCAGGGATTGAAAC,GTTGAAATCAACTTAAATCCCTATCAGGG----------ATTGAAA	47,37,37,46	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B	54,56,56,54	56	TypeI-D	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|67aa|down_0|NC_019678.1_291146_291347_-,NA|117aa|down_5|NC_019678.1_297836_298187_+,NA|198aa|down_6|NC_019678.1_298428_299022_-	NA|290aa|up_9|NC_019678.1_272228_273098_+	pfam03881, Fructosamin_kin, Fructosamine kinase	WYL|291aa|up_8|NC_019678.1_273164_274037_-	pfam13280, WYL, WYL domain	cas3|726aa|up_7|NC_019678.1_274136_276314_+	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain	cas10d|1138aa|up_6|NC_019678.1_276942_280356_+	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d	csc2gr7|348aa|up_5|NC_019678.1_280506_281550_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|244aa|up_4|NC_019678.1_281552_282284_+	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1	cas6|281aa|up_3|NC_019678.1_282517_283360_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas4|198aa|up_2|NC_019678.1_283597_284191_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|266aa|up_1|NC_019678.1_284290_285088_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|91aa|up_0|NC_019678.1_286459_286732_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|67aa|down_0|NC_019678.1_291146_291347_-	NA	NA|154aa|down_1|NC_019678.1_292224_292686_+	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins	NA|375aa|down_2|NC_019678.1_292963_294088_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|428aa|down_3|NC_019678.1_294186_295470_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|240aa|down_4|NC_019678.1_296918_297638_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|117aa|down_5|NC_019678.1_297836_298187_+	NA	NA|198aa|down_6|NC_019678.1_298428_299022_-	NA	NA|343aa|down_7|NC_019678.1_299484_300513_-	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase	NA|356aa|down_8|NC_019678.1_300963_302031_-	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins	NA|729aa|down_9|NC_019678.1_302869_305056_-	cd05387, BY-kinase, bacterial tyrosine-kinase
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	5	1609105-1609203	5	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AGAGGGATGTCCGAAGCAGACTTTCAC	27	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|120aa|up_7|NC_019678.1_1600393_1600753_-,NA|126aa|down_3|NC_019678.1_1612403_1612781_-,NA|105aa|down_5|NC_019678.1_1614466_1614781_-	NA|756aa|up_9|NC_019678.1_1594024_1596292_+	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|822aa|up_8|NC_019678.1_1596704_1599170_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|120aa|up_7|NC_019678.1_1600393_1600753_-	NA	NA|98aa|up_6|NC_019678.1_1600920_1601214_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|102aa|up_5|NC_019678.1_1601228_1601534_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|193aa|up_4|NC_019678.1_1601548_1602127_-	pfam05685, Uma2, Putative restriction endonuclease	NA|189aa|up_3|NC_019678.1_1602138_1602705_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|367aa|up_2|NC_019678.1_1603068_1604169_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|297aa|up_1|NC_019678.1_1604509_1605400_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|1182aa|up_0|NC_019678.1_1605480_1609026_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|265aa|down_0|NC_019678.1_1609488_1610283_+	pfam07366, SnoaL, SnoaL-like polyketide cyclase	NA|375aa|down_1|NC_019678.1_1610332_1611457_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|240aa|down_2|NC_019678.1_1611513_1612233_-	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561	NA|126aa|down_3|NC_019678.1_1612403_1612781_-	NA	NA|268aa|down_4|NC_019678.1_1613299_1614103_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|105aa|down_5|NC_019678.1_1614466_1614781_-	NA	NA|128aa|down_6|NC_019678.1_1614822_1615206_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)	NA|310aa|down_7|NC_019678.1_1615586_1616516_+	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	NA|420aa|down_8|NC_019678.1_1617039_1618299_+	PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated	NA|152aa|down_9|NC_019678.1_1618840_1619296_+	pfam01475, FUR, Ferric uptake regulator family
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	6	1975044-1975149	6	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AAGGAGAGGGGCTGGGGGTGAGGT	24	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|136aa|up_4|NC_019678.1_1968811_1969219_-,NA|184aa|down_1|NC_019678.1_1975680_1976232_-,NA|80aa|down_3|NC_019678.1_1978557_1978797_+	NA|430aa|up_9|NC_019678.1_1961674_1962964_+	PRK00077, eno, enolase; Provisional	NA|353aa|up_8|NC_019678.1_1963455_1964514_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|570aa|up_7|NC_019678.1_1964785_1966495_+	PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA	NA|438aa|up_6|NC_019678.1_1966834_1968148_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|223aa|up_5|NC_019678.1_1968131_1968800_+	pfam13707, RloB, RloB-like protein	NA|136aa|up_4|NC_019678.1_1968811_1969219_-	NA	NA|127aa|up_3|NC_019678.1_1969481_1969862_-	pfam11196, DUF2834, Protein of unknown function (DUF2834)	NA|275aa|up_2|NC_019678.1_1969967_1970792_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|158aa|up_1|NC_019678.1_1970912_1971386_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|1181aa|up_0|NC_019678.1_1971478_1975021_+	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase	NA|123aa|down_0|NC_019678.1_1975231_1975600_+	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|184aa|down_1|NC_019678.1_1975680_1976232_-	NA	NA|289aa|down_2|NC_019678.1_1976431_1977298_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|80aa|down_3|NC_019678.1_1978557_1978797_+	NA	NA|400aa|down_4|NC_019678.1_1978895_1980095_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|213aa|down_5|NC_019678.1_1980390_1981029_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|263aa|down_6|NC_019678.1_1981052_1981841_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|336aa|down_7|NC_019678.1_1982083_1983091_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|120aa|down_8|NC_019678.1_1983459_1983819_+	PRK07459, PRK07459, single-stranded DNA-binding protein; Provisional	NA|249aa|down_9|NC_019678.1_1983985_1984732_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	7	2244490-2244639	3	CRT	no	csa3	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type I-A	CAAATGATGAAAAAGATG	18	1	1	2244556-2244573	NC_019678.1_3036505-3036488	N:A	3	3	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|102aa|up_3|NC_019678.1_2239134_2239440_-,NA|132aa|up_2|NC_019678.1_2239512_2239908_-,NA|113aa|down_4|NC_019678.1_2249032_2249371_+,NA|88aa|down_9|NC_019678.1_2253677_2253941_-	NA|217aa|up_9|NC_019678.1_2233000_2233651_-	TIGR02690, arsenical_resistance_protein_ArsH_putative, arsenical resistance protein ArsH	NA|394aa|up_8|NC_019678.1_2233733_2234915_-	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein	NA|349aa|up_7|NC_019678.1_2234946_2235993_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	csa3|107aa|up_6|NC_019678.1_2236109_2236430_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|331aa|up_5|NC_019678.1_2237130_2238123_-	TIGR02997, RNA_polymerase_sigma_subunit_sigma70/sigma32, RNA polymerase sigma factor, cyanobacterial RpoD-like family	NA|161aa|up_4|NC_019678.1_2238536_2239019_-	pfam10989, DUF2808, Protein of unknown function (DUF2808)	NA|102aa|up_3|NC_019678.1_2239134_2239440_-	NA	NA|132aa|up_2|NC_019678.1_2239512_2239908_-	NA	NA|619aa|up_1|NC_019678.1_2240378_2242235_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|305aa|up_0|NC_019678.1_2242528_2243443_+	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|161aa|down_0|NC_019678.1_2244766_2245249_+	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982	NA|113aa|down_1|NC_019678.1_2245769_2246108_+	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|151aa|down_2|NC_019678.1_2246227_2246680_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|689aa|down_3|NC_019678.1_2246786_2248853_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|113aa|down_4|NC_019678.1_2249032_2249371_+	NA	NA|294aa|down_5|NC_019678.1_2249382_2250264_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|65aa|down_6|NC_019678.1_2250368_2250563_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|771aa|down_7|NC_019678.1_2250641_2252954_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|175aa|down_8|NC_019678.1_2252968_2253493_+	COG4633, COG4633, Plastocyanin domain containing protein [General function prediction only]	NA|88aa|down_9|NC_019678.1_2253677_2253941_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	8	2760060-2760199	7	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	CCAGAGATTGAAAACCTCTGTCTCATAGCTAAAATCATCTAAAGATG	47	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|147aa|up_9|NC_019678.1_2745678_2746119_-,NA|212aa|up_6|NC_019678.1_2750237_2750873_-,NA	NA|147aa|up_9|NC_019678.1_2745678_2746119_-	NA	NA|285aa|up_8|NC_019678.1_2746500_2747355_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|715aa|up_7|NC_019678.1_2747487_2749632_-	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal	NA|212aa|up_6|NC_019678.1_2750237_2750873_-	NA	NA|215aa|up_5|NC_019678.1_2751107_2751752_+	pfam05685, Uma2, Putative restriction endonuclease	NA|265aa|up_4|NC_019678.1_2752219_2753014_-	cd09132, PLDc_unchar4, Putative catalytic domain of uncharacterized phospholipase D-like proteins	NA|621aa|up_3|NC_019678.1_2753019_2754882_-	pfam09369, DUF1998, Domain of unknown function (DUF1998)	NA|1176aa|up_2|NC_019678.1_2755293_2758821_-	smart00490, HELICc, helicase superfamily c-terminal domain	NA|87aa|up_1|NC_019678.1_2759072_2759333_+	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|135aa|up_0|NC_019678.1_2759587_2759992_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|1074aa|down_0|NC_019678.1_2763649_2766871_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|633aa|down_1|NC_019678.1_2767676_2769575_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|82aa|down_2|NC_019678.1_2769852_2770098_-	CHL00065, psaC, photosystem I subunit VII	NA|264aa|down_3|NC_019678.1_2770534_2771326_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|162aa|down_4|NC_019678.1_2771853_2772339_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|275aa|down_5|NC_019678.1_2772442_2773267_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|308aa|down_6|NC_019678.1_2773315_2774239_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|333aa|down_7|NC_019678.1_2774352_2775351_+	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	NA|339aa|down_8|NC_019678.1_2775514_2776531_-	pfam11927, DUF3445, Protein of unknown function (DUF3445)	NA|864aa|down_9|NC_019678.1_2776567_2779159_-	pfam01590, GAF, GAF domain
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	9	2770769-2770918	8	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	CCTTATCAACCGAGAAAAACTGCT	24	0	0	NA	NA	N:A	2	2	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|212aa|up_9|NC_019678.1_2750237_2750873_-,NA	NA|212aa|up_9|NC_019678.1_2750237_2750873_-	NA	NA|215aa|up_8|NC_019678.1_2751107_2751752_+	pfam05685, Uma2, Putative restriction endonuclease	NA|265aa|up_7|NC_019678.1_2752219_2753014_-	cd09132, PLDc_unchar4, Putative catalytic domain of uncharacterized phospholipase D-like proteins	NA|621aa|up_6|NC_019678.1_2753019_2754882_-	pfam09369, DUF1998, Domain of unknown function (DUF1998)	NA|1176aa|up_5|NC_019678.1_2755293_2758821_-	smart00490, HELICc, helicase superfamily c-terminal domain	NA|87aa|up_4|NC_019678.1_2759072_2759333_+	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|135aa|up_3|NC_019678.1_2759587_2759992_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|1074aa|up_2|NC_019678.1_2763649_2766871_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|633aa|up_1|NC_019678.1_2767676_2769575_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|82aa|up_0|NC_019678.1_2769852_2770098_-	CHL00065, psaC, photosystem I subunit VII	NA|162aa|down_0|NC_019678.1_2771853_2772339_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|275aa|down_1|NC_019678.1_2772442_2773267_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|308aa|down_2|NC_019678.1_2773315_2774239_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|333aa|down_3|NC_019678.1_2774352_2775351_+	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	NA|339aa|down_4|NC_019678.1_2775514_2776531_-	pfam11927, DUF3445, Protein of unknown function (DUF3445)	NA|864aa|down_5|NC_019678.1_2776567_2779159_-	pfam01590, GAF, GAF domain	NA|285aa|down_6|NC_019678.1_2779760_2780615_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|306aa|down_7|NC_019678.1_2780722_2781640_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|221aa|down_8|NC_019678.1_2781862_2782525_+	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs	NA|205aa|down_9|NC_019678.1_2782583_2783198_-	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	10	2950539-2950645	9	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	ATTTGGTTGTAGTTGATAAATTACCGTAACCGTCACAGC	39	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|72aa|up_6|NC_019678.1_2941411_2941627_-,NA|177aa|up_2|NC_019678.1_2947646_2948177_-,NA|270aa|down_5|NC_019678.1_2956183_2956993_-,NA|270aa|down_6|NC_019678.1_2957883_2958693_-,NA|74aa|down_9|NC_019678.1_2960914_2961136_-	NA|230aa|up_9|NC_019678.1_2936494_2937184_-	PRK09699, PRK09699, D-allose ABC transporter permease	NA|623aa|up_8|NC_019678.1_2937831_2939700_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|183aa|up_7|NC_019678.1_2940100_2940649_-	COG0629, Ssb, Single-stranded DNA-binding protein [DNA replication, recombination, and repair]	NA|72aa|up_6|NC_019678.1_2941411_2941627_-	NA	NA|442aa|up_5|NC_019678.1_2942027_2943353_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|843aa|up_4|NC_019678.1_2943472_2946001_-	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|371aa|up_3|NC_019678.1_2946416_2947529_-	pfam12224, Amidoligase_2, Putative amidoligase enzyme	NA|177aa|up_2|NC_019678.1_2947646_2948177_-	NA	NA|405aa|up_1|NC_019678.1_2948486_2949701_-	cd03818, GT4_ExpC-like, Rhizobium meliloti ExpC and similar proteins	NA|99aa|up_0|NC_019678.1_2950092_2950389_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|519aa|down_0|NC_019678.1_2950688_2952245_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|243aa|down_1|NC_019678.1_2952425_2953154_+	CHL00148, orf27, Ycf27; Reviewed	NA|212aa|down_2|NC_019678.1_2953342_2953978_+	pfam11152, CCB2_CCB4, Cofactor assembly of complex C subunit B, CCB2/CCB4	NA|174aa|down_3|NC_019678.1_2954114_2954636_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|252aa|down_4|NC_019678.1_2954884_2955640_-	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain	NA|270aa|down_5|NC_019678.1_2956183_2956993_-	NA	NA|270aa|down_6|NC_019678.1_2957883_2958693_-	NA	NA|253aa|down_7|NC_019678.1_2959513_2960272_-	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|139aa|down_8|NC_019678.1_2960403_2960820_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|74aa|down_9|NC_019678.1_2960914_2961136_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	11	3020877-3021036	10	CRISPRCasFinder	no	cas6,cas8b3,cas7,cas5,RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	CTGATATCGATTTGCTTTTAAGCACTTT	28	0	0	NA	NA	N:A	2	2	Unclear	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|404aa|down_0|NC_019678.1_3021631_3022843_+,NA|81aa|down_5|NC_019678.1_3028814_3029057_-,NA|64aa|down_6|NC_019678.1_3029712_3029904_-	NA|173aa|up_9|NC_019678.1_3006015_3006534_+	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only]	NA|307aa|up_8|NC_019678.1_3006651_3007572_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|275aa|up_7|NC_019678.1_3007671_3008496_+	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase	NA|328aa|up_6|NC_019678.1_3008783_3009767_+	pfam00931, NB-ARC, NB-ARC domain	NA|776aa|up_5|NC_019678.1_3009738_3012066_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|189aa|up_4|NC_019678.1_3012121_3012688_-	cd06260, DUF820, Domain of unknown function (DUF820)	cas6|223aa|up_3|NC_019678.1_3013106_3013775_+	pfam09559, Cas6, Cas6 Crispr	cas8b3|526aa|up_2|NC_019678.1_3013771_3015349_+	cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|319aa|up_1|NC_019678.1_3015329_3016286_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|213aa|up_0|NC_019678.1_3016291_3016930_+	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|404aa|down_0|NC_019678.1_3021631_3022843_+	NA	NA|295aa|down_1|NC_019678.1_3022873_3023758_-	cd17264, RMtype1_S_Eco3763I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli O69:H11 07-3763 S subunit (S	NA|330aa|down_2|NC_019678.1_3024984_3025974_-	pfam06527, TniQ, TniQ	NA|208aa|down_3|NC_019678.1_3026244_3026868_+	COG1309, AcrR, Transcriptional regulator [Transcription]	RT|529aa|down_4|NC_019678.1_3026967_3028554_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|81aa|down_5|NC_019678.1_3028814_3029057_-	NA	NA|64aa|down_6|NC_019678.1_3029712_3029904_-	NA	NA|256aa|down_7|NC_019678.1_3030009_3030777_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|370aa|down_8|NC_019678.1_3030949_3032059_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|270aa|down_9|NC_019678.1_3032513_3033323_+	sd00006, TPR, Tetratricopeptide repeat
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	12	3045215-3045319	11	CRISPRCasFinder	no	RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GGCGTTGCTGATTAAAAGTATGATTT	26	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|114aa|up_3|NC_019678.1_3039332_3039674_+,NA	NA|421aa|up_9|NC_019678.1_3033791_3035054_+	cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase	NA|433aa|up_8|NC_019678.1_3035097_3036396_-	PRK09294, PRK09294, phthiocerol/phthiodiolone dimycocerosyl transferase	NA|263aa|up_7|NC_019678.1_3036466_3037255_-	TIGR01548, Imidazoleglycerol-phosphate_dehydratase, haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548	NA|110aa|up_6|NC_019678.1_3037476_3037806_+	PRK02724, PRK02724, 30S ribosomal protein PSRP-3	NA|204aa|up_5|NC_019678.1_3038314_3038926_+	COG5381, COG5381, Uncharacterized protein conserved in bacteria [Function unknown]	NA|115aa|up_4|NC_019678.1_3038971_3039316_+	COG5439, COG5439, Uncharacterized conserved protein [Function unknown]	NA|114aa|up_3|NC_019678.1_3039332_3039674_+	NA	NA|517aa|up_2|NC_019678.1_3039813_3041364_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|138aa|up_1|NC_019678.1_3042673_3043087_-	CHL00063, atpE, ATP synthase CF1 epsilon subunit	NA|484aa|up_0|NC_019678.1_3043249_3044701_-	CHL00060, atpB, ATP synthase CF1 beta subunit	NA|414aa|down_0|NC_019678.1_3046272_3047514_+	COG4671, COG4671, Predicted glycosyl transferase [General function prediction only]	NA|626aa|down_1|NC_019678.1_3047694_3049572_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|385aa|down_2|NC_019678.1_3049663_3050818_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|339aa|down_3|NC_019678.1_3051122_3052139_+	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|123aa|down_4|NC_019678.1_3052253_3052622_-	cd17624, REC_OmpR_PmrA-like, phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators	NA|295aa|down_5|NC_019678.1_3053386_3054271_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|223aa|down_6|NC_019678.1_3055362_3056031_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|519aa|down_7|NC_019678.1_3056137_3057694_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|275aa|down_8|NC_019678.1_3057936_3058761_+	COG2912, COG2912, Uncharacterized conserved protein [Function unknown]	NA|149aa|down_9|NC_019678.1_3058910_3059357_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	13	3357048-3357164	12	CRISPRCasFinder	no	cas14k	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	TGGGAATGCTTTCTAAGAGGCTCTGCCTCGTTTAT	35	0	0	NA	NA	N:A	1	1	TypeV	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|153aa|up_7|NC_019678.1_3343585_3344044_+,NA|445aa|down_9|NC_019678.1_3370690_3372025_+	NA|333aa|up_9|NC_019678.1_3339316_3340315_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|673aa|up_8|NC_019678.1_3341235_3343254_-	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown]	NA|153aa|up_7|NC_019678.1_3343585_3344044_+	NA	NA|403aa|up_6|NC_019678.1_3344093_3345302_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|1778aa|up_5|NC_019678.1_3345486_3350820_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|473aa|up_4|NC_019678.1_3350986_3352405_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|466aa|up_3|NC_019678.1_3352938_3354336_-	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|259aa|up_2|NC_019678.1_3354475_3355252_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|147aa|up_1|NC_019678.1_3355378_3355819_+	cd06987, cupin_MAE_RS03005, Microcystis aeruginosa MAE_RS03005 and related proteins, cupin domain	NA|178aa|up_0|NC_019678.1_3356389_3356923_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|606aa|down_0|NC_019678.1_3357286_3359104_-	PRK07431, PRK07431, aspartate kinase; Provisional	NA|240aa|down_1|NC_019678.1_3359414_3360134_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|897aa|down_2|NC_019678.1_3360586_3363277_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|605aa|down_3|NC_019678.1_3363286_3365101_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|148aa|down_4|NC_019678.1_3365256_3365700_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|404aa|down_5|NC_019678.1_3365964_3367176_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|377aa|down_6|NC_019678.1_3367347_3368478_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	cas14k|471aa|down_7|NC_019678.1_3368575_3369988_-	pfam01385, OrfB_IS605, Probable transposase	NA|138aa|down_8|NC_019678.1_3370057_3370471_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|445aa|down_9|NC_019678.1_3370690_3372025_+	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	14	3401060-3401167	13	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	CTTCAACCTTACCTTTTCCCCTCTCCCTTTATAAGGA	37	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|302aa|down_8|NC_019678.1_3417899_3418805_+	NA|313aa|up_9|NC_019678.1_3386418_3387357_+	pfam06897, DUF1269, Protein of unknown function (DUF1269)	NA|478aa|up_8|NC_019678.1_3387509_3388943_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|230aa|up_7|NC_019678.1_3389454_3390144_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|327aa|up_6|NC_019678.1_3390520_3391501_+	PRK00861, PRK00861, putative lipid kinase; Reviewed	NA|535aa|up_5|NC_019678.1_3392202_3393807_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|323aa|up_4|NC_019678.1_3394416_3395385_+	pfam00395, SLH, S-layer homology domain	NA|216aa|up_3|NC_019678.1_3395511_3396159_-	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	NA|740aa|up_2|NC_019678.1_3396768_3398988_-	TIGR00930, Solute_carrier_family_12_member_1, K-Cl cotransporter	NA|257aa|up_1|NC_019678.1_3399343_3400114_-	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|252aa|up_0|NC_019678.1_3400113_3400869_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|127aa|down_0|NC_019678.1_3401766_3402147_+	pfam14271, DUF4359, Domain of unknown function (DUF4359)	NA|477aa|down_1|NC_019678.1_3402258_3403689_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|1679aa|down_2|NC_019678.1_3403718_3408755_-	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|846aa|down_3|NC_019678.1_3408999_3411537_+	pfam05860, Haemagg_act, haemagglutination activity domain	NA|845aa|down_4|NC_019678.1_3411640_3414175_+	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|281aa|down_5|NC_019678.1_3414246_3415089_-	PRK07417, PRK07417, prephenate/arogenate dehydrogenase	NA|520aa|down_6|NC_019678.1_3415282_3416842_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|190aa|down_7|NC_019678.1_3417181_3417751_+	pfam07466, DUF1517, Protein of unknown function (DUF1517)	NA|302aa|down_8|NC_019678.1_3417899_3418805_+	NA	NA|354aa|down_9|NC_019678.1_3418974_3420036_-	PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	15	4185447-4185550	14	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	TCTTCGGTGCGCGTTCCTGCTTTTTG	26	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|176aa|up_3|NC_019678.1_4180689_4181217_-,NA|92aa|up_2|NC_019678.1_4182210_4182486_+,NA|54aa|down_7|NC_019678.1_4194923_4195085_-	NA|437aa|up_9|NC_019678.1_4170496_4171807_-	pfam14516, AAA_35, AAA-like domain	NA|299aa|up_8|NC_019678.1_4172283_4173180_-	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold	NA|620aa|up_7|NC_019678.1_4173347_4175207_+	COG4449, COG4449, Predicted protease of the Abi (CAAX) family [General function prediction only]	NA|213aa|up_6|NC_019678.1_4175650_4176289_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|303aa|up_5|NC_019678.1_4176457_4177366_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|367aa|up_4|NC_019678.1_4179534_4180635_+	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|176aa|up_3|NC_019678.1_4180689_4181217_-	NA	NA|92aa|up_2|NC_019678.1_4182210_4182486_+	NA	NA|224aa|up_1|NC_019678.1_4182731_4183403_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|405aa|up_0|NC_019678.1_4183445_4184660_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|376aa|down_0|NC_019678.1_4186911_4188039_+	pfam14240, YHYH, YHYH protein	NA|371aa|down_1|NC_019678.1_4188069_4189182_+	pfam14240, YHYH, YHYH protein	NA|228aa|down_2|NC_019678.1_4189386_4190070_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|485aa|down_3|NC_019678.1_4190066_4191521_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|422aa|down_4|NC_019678.1_4191506_4192772_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|217aa|down_5|NC_019678.1_4192822_4193473_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|312aa|down_6|NC_019678.1_4193991_4194927_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|54aa|down_7|NC_019678.1_4194923_4195085_-	NA	NA|448aa|down_8|NC_019678.1_4195435_4196779_+	pfam00264, Tyrosinase, Common central domain of tyrosinase	NA|254aa|down_9|NC_019678.1_4196911_4197673_-	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	16	4246644-4247202	15,4,4	CRISPRCasFinder,CRT,PILER-CR	no	PD-DExK,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas6	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCATCCCCTGACGGGGTTAAAGATTAAAAAC,GTTTCCATCCCCTGACGGGGTTAAAGATTAAAAAC,GTTTCCATCCCCTGACGGGGTTAAAGATTAAAAAC	35,35,35	0	0	NA	NA	N:A	7,7,6	7	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|60aa|up_2|NC_019678.1_4242292_4242472_+,PD-DExK|207aa|up_0|NC_019678.1_4245930_4246551_-,NA|181aa|down_0|NC_019678.1_4247550_4248093_-,csm2gr11|157aa|down_4|NC_019678.1_4252829_4253300_+,csx19|165aa|down_7|NC_019678.1_4255302_4255797_+,csx21|226aa|down_9|NC_019678.1_4256888_4257566_+	NA|128aa|up_9|NC_019678.1_4229756_4230140_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|480aa|up_8|NC_019678.1_4230833_4232273_+	pfam13448, DUF4114, Domain of unknown function (DUF4114)	NA|510aa|up_7|NC_019678.1_4232511_4234041_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|650aa|up_6|NC_019678.1_4234649_4236599_-	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|391aa|up_5|NC_019678.1_4236678_4237851_+	COG2082, CobH, Precorrin isomerase [Coenzyme metabolism]	NA|573aa|up_4|NC_019678.1_4238200_4239919_+	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|570aa|up_3|NC_019678.1_4240127_4241837_+	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|60aa|up_2|NC_019678.1_4242292_4242472_+	NA	NA|876aa|up_1|NC_019678.1_4243082_4245710_+	PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed	PD-DExK|207aa|up_0|NC_019678.1_4245930_4246551_-	NA	NA|181aa|down_0|NC_019678.1_4247550_4248093_-	NA	cas10|797aa|down_1|NC_019678.1_4248473_4250864_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	csm3gr7|239aa|down_2|NC_019678.1_4250863_4251580_+	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx10gr5|419aa|down_3|NC_019678.1_4251576_4252833_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm2gr11|157aa|down_4|NC_019678.1_4252829_4253300_+	NA	csm3gr7|288aa|down_5|NC_019678.1_4253347_4254211_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm3gr7|326aa|down_6|NC_019678.1_4254328_4255306_+	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx19|165aa|down_7|NC_019678.1_4255302_4255797_+	NA	csm3gr7|356aa|down_8|NC_019678.1_4255821_4256889_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx21|226aa|down_9|NC_019678.1_4256888_4257566_+	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	17	4257746-4257927	16	CRISPRCasFinder	no	PD-DExK,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas6	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type III-B,Type III-D,Type III-C,Type III-A	CGTTTCCATCCCCTCTCGGGGTTAAAGAATCAAAACCC	38	0	0	NA	NA	N:A	2	2	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|181aa|up_9|NC_019678.1_4247550_4248093_-,csm2gr11|157aa|up_5|NC_019678.1_4252829_4253300_+,csx19|165aa|up_2|NC_019678.1_4255302_4255797_+,csx21|226aa|up_0|NC_019678.1_4256888_4257566_+,NA|249aa|down_0|NC_019678.1_4258252_4258999_-	NA|181aa|up_9|NC_019678.1_4247550_4248093_-	NA	cas10|797aa|up_8|NC_019678.1_4248473_4250864_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	csm3gr7|239aa|up_7|NC_019678.1_4250863_4251580_+	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx10gr5|419aa|up_6|NC_019678.1_4251576_4252833_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm2gr11|157aa|up_5|NC_019678.1_4252829_4253300_+	NA	csm3gr7|288aa|up_4|NC_019678.1_4253347_4254211_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm3gr7|326aa|up_3|NC_019678.1_4254328_4255306_+	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx19|165aa|up_2|NC_019678.1_4255302_4255797_+	NA	csm3gr7|356aa|up_1|NC_019678.1_4255821_4256889_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx21|226aa|up_0|NC_019678.1_4256888_4257566_+	NA	NA|249aa|down_0|NC_019678.1_4258252_4258999_-	NA	NA|193aa|down_1|NC_019678.1_4259024_4259603_+	pfam13328, HD_4, HD domain	cas6|371aa|down_2|NC_019678.1_4259833_4260946_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|387aa|down_3|NC_019678.1_4261029_4262190_-	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|292aa|down_4|NC_019678.1_4262957_4263833_-	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]	NA|188aa|down_5|NC_019678.1_4264194_4264758_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|248aa|down_6|NC_019678.1_4264946_4265690_-	sd00006, TPR, Tetratricopeptide repeat	NA|443aa|down_7|NC_019678.1_4266505_4267834_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|402aa|down_8|NC_019678.1_4268688_4269894_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|291aa|down_9|NC_019678.1_4270446_4271319_+	COG2510, COG2510, Predicted membrane protein [Function unknown]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	18	4282768-4282929	5	PILER-CR	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	TGTTTCTGGATAATGGAAAGTCGAATCGCTACTTTGTTCGCTGTAATTTGGAGT	54	0	0	NA	NA	N:A	2	2	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|217aa|up_8|NC_019678.1_4273867_4274518_+,NA|133aa|up_6|NC_019678.1_4275523_4275922_-,NA|98aa|up_1|NC_019678.1_4279465_4279759_+,NA|50aa|down_0|NC_019678.1_4285087_4285237_-,NA|292aa|down_1|NC_019678.1_4285550_4286426_+,NA|65aa|down_2|NC_019678.1_4287256_4287451_+,NA|155aa|down_3|NC_019678.1_4288997_4289462_+,NA|101aa|down_7|NC_019678.1_4295509_4295812_+,NA|99aa|down_8|NC_019678.1_4296035_4296332_+,NA|68aa|down_9|NC_019678.1_4296504_4296708_+	NA|467aa|up_9|NC_019678.1_4272397_4273798_+	CHL00177, ccs1, c-type cytochrome biogenensis protein; Validated	NA|217aa|up_8|NC_019678.1_4273867_4274518_+	NA	NA|129aa|up_7|NC_019678.1_4275015_4275402_-	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional	NA|133aa|up_6|NC_019678.1_4275523_4275922_-	NA	NA|128aa|up_5|NC_019678.1_4276175_4276559_-	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|89aa|up_4|NC_019678.1_4276738_4277005_-	pfam03795, YCII, YCII-related domain	NA|320aa|up_3|NC_019678.1_4277260_4278220_-	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain	NA|181aa|up_2|NC_019678.1_4278759_4279302_+	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]	NA|98aa|up_1|NC_019678.1_4279465_4279759_+	NA	NA|355aa|up_0|NC_019678.1_4280280_4281345_+	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	NA|50aa|down_0|NC_019678.1_4285087_4285237_-	NA	NA|292aa|down_1|NC_019678.1_4285550_4286426_+	NA	NA|65aa|down_2|NC_019678.1_4287256_4287451_+	NA	NA|155aa|down_3|NC_019678.1_4288997_4289462_+	NA	NA|1021aa|down_4|NC_019678.1_4289550_4292613_+	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|517aa|down_5|NC_019678.1_4292768_4294319_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|261aa|down_6|NC_019678.1_4294380_4295163_+	COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]	NA|101aa|down_7|NC_019678.1_4295509_4295812_+	NA	NA|99aa|down_8|NC_019678.1_4296035_4296332_+	NA	NA|68aa|down_9|NC_019678.1_4296504_4296708_+	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	19	4390690-4391013	17,5,6	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AGTTTCAATCCCTAATAGGGATTTATGTTAGTTTCAACT,GTTTCAATCCCTAATAGGGATTTATGTNAGTTTCAACT,AGTTGAAACTAACATAAATCCCTATTAGGG----------ATTGAAAC	39,38,48	0	0	NA	NA	N:A	4,4,4	4	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|112aa|up_6|NC_019678.1_4382810_4383146_+,NA|124aa|up_2|NC_019678.1_4386944_4387316_-,NA|70aa|down_3|NC_019678.1_4395530_4395740_+,NA|356aa|down_8|NC_019678.1_4401998_4403066_+,NA|135aa|down_9|NC_019678.1_4403326_4403731_-	NA|294aa|up_9|NC_019678.1_4380066_4380948_-	sd00006, TPR, Tetratricopeptide repeat	NA|88aa|up_8|NC_019678.1_4381135_4381399_-	CHL00183, petJ, cytochrome c553; Provisional	NA|175aa|up_7|NC_019678.1_4382107_4382632_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|112aa|up_6|NC_019678.1_4382810_4383146_+	NA	NA|455aa|up_5|NC_019678.1_4383254_4384619_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|148aa|up_4|NC_019678.1_4385011_4385455_-	cd07176, terB, tellurite resistance protein terB	NA|199aa|up_3|NC_019678.1_4386339_4386936_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|124aa|up_2|NC_019678.1_4386944_4387316_-	NA	NA|270aa|up_1|NC_019678.1_4387604_4388414_-	pfam07885, Ion_trans_2, Ion channel	NA|310aa|up_0|NC_019678.1_4388551_4389481_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|183aa|down_0|NC_019678.1_4391251_4391800_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|162aa|down_1|NC_019678.1_4391887_4392373_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|843aa|down_2|NC_019678.1_4392797_4395326_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|70aa|down_3|NC_019678.1_4395530_4395740_+	NA	NA|239aa|down_4|NC_019678.1_4395841_4396558_-	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain	NA|141aa|down_5|NC_019678.1_4396940_4397363_-	cd07177, terB_like, tellurium resistance terB-like protein	NA|460aa|down_6|NC_019678.1_4397410_4398790_-	PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional	NA|479aa|down_7|NC_019678.1_4399082_4400519_-	pfam12899, Glyco_hydro_100, Alkaline and neutral invertase	NA|356aa|down_8|NC_019678.1_4401998_4403066_+	NA	NA|135aa|down_9|NC_019678.1_4403326_4403731_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	20	4488974-4489073	18	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	TTGGAATTAGTAAATCATTAAGC	23	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|63aa|up_8|NC_019678.1_4463207_4463396_-,NA|116aa|down_1|NC_019678.1_4491196_4491544_-,NA|145aa|down_5|NC_019678.1_4495268_4495703_+,NA|121aa|down_7|NC_019678.1_4496364_4496727_-	NA|311aa|up_9|NC_019678.1_4462131_4463064_-	cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII	NA|63aa|up_8|NC_019678.1_4463207_4463396_-	NA	NA|86aa|up_7|NC_019678.1_4463563_4463821_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|919aa|up_6|NC_019678.1_4464168_4466925_-	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|1200aa|up_5|NC_019678.1_4468389_4471989_-	pfam17210, SdrD_B, SdrD B-like domain	NA|721aa|up_4|NC_019678.1_4472816_4474979_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|525aa|up_3|NC_019678.1_4480085_4481660_-	TIGR01451, unnamed_protein_product, conserved repeat domain	NA|190aa|up_2|NC_019678.1_4481804_4482374_-	COG4719, COG4719, Uncharacterized protein conserved in bacteria [Function unknown]	NA|435aa|up_1|NC_019678.1_4486491_4487796_+	PRK07591, PRK07591, threonine synthase; Validated	NA|92aa|up_0|NC_019678.1_4487972_4488248_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|666aa|down_0|NC_019678.1_4489119_4491117_+	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|116aa|down_1|NC_019678.1_4491196_4491544_-	NA	NA|165aa|down_2|NC_019678.1_4491821_4492316_+	pfam11210, DUF2996, Protein of unknown function (DUF2996)	NA|172aa|down_3|NC_019678.1_4492312_4492828_-	PHA01886, PHA01886, TM2 domain-containing protein	NA|359aa|down_4|NC_019678.1_4493566_4494643_+	PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional	NA|145aa|down_5|NC_019678.1_4495268_4495703_+	NA	NA|92aa|down_6|NC_019678.1_4495882_4496158_-	pfam02325, YGGT, YGGT family	NA|121aa|down_7|NC_019678.1_4496364_4496727_-	NA	NA|217aa|down_8|NC_019678.1_4496818_4497469_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|496aa|down_9|NC_019678.1_4497884_4499372_+	TIGR02730, Carotenoid_isomerase, carotene isomerase
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	21	4614575-4614973	6	CRT	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AAGGTGGTAANGGTAANGANA	21	2	2	4614650-4614682|4614758-4614790	NC_019678.1_4614542-4614574|NC_019678.1_4614542-4614574	N:A	7	7	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|205aa|up_7|NC_019678.1_4600989_4601604_-,NA|821aa|up_5|NC_019678.1_4602912_4605375_-,NA|112aa|up_4|NC_019678.1_4605989_4606325_-,NA|212aa|down_3|NC_019678.1_4622825_4623461_+,NA|238aa|down_6|NC_019678.1_4626967_4627681_-,NA|144aa|down_7|NC_019678.1_4628048_4628480_-,NA|295aa|down_8|NC_019678.1_4628665_4629550_-	NA|635aa|up_9|NC_019678.1_4597279_4599184_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|300aa|up_8|NC_019678.1_4599709_4600609_+	PRK13245, hetR, heterocyst differentiation control protein; Reviewed	NA|205aa|up_7|NC_019678.1_4600989_4601604_-	NA	NA|203aa|up_6|NC_019678.1_4601902_4602511_+	CHL00113, rps4, ribosomal protein S4; Reviewed	NA|821aa|up_5|NC_019678.1_4602912_4605375_-	NA	NA|112aa|up_4|NC_019678.1_4605989_4606325_-	NA	NA|702aa|up_3|NC_019678.1_4606863_4608969_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|460aa|up_2|NC_019678.1_4609361_4610741_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|162aa|up_1|NC_019678.1_4611044_4611530_+	pfam07173, GRDP-like, Glycine-rich domain-containing protein-like	NA|775aa|up_0|NC_019678.1_4611630_4613955_-	pfam08281, Sigma70_r4_2, Sigma-70, region 4	NA|510aa|down_0|NC_019678.1_4617383_4618913_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|159aa|down_1|NC_019678.1_4619402_4619879_+	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|230aa|down_2|NC_019678.1_4620844_4621534_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|212aa|down_3|NC_019678.1_4622825_4623461_+	NA	NA|736aa|down_4|NC_019678.1_4623545_4625753_-	cd13566, PBP2_phosphate, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|315aa|down_5|NC_019678.1_4626026_4626971_-	pfam08852, DUF1822, Protein of unknown function (DUF1822)	NA|238aa|down_6|NC_019678.1_4626967_4627681_-	NA	NA|144aa|down_7|NC_019678.1_4628048_4628480_-	NA	NA|295aa|down_8|NC_019678.1_4628665_4629550_-	NA	NA|607aa|down_9|NC_019678.1_4629979_4631800_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	22	5162108-5162565	19,7,7	CRISPRCasFinder,CRT,PILER-CR	no	RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GTTTCCATCCCCGCTGAGGGGAGTTGGTTTGGAAAG,GTTTCCATCCCCGCTGAGGGGAGTTGGTTTGGAAAG,GTTTCCATCCCCGCTGAGGGGAGTTGGTTTGGAAAG	36,36,36	0	0	NA	NA	N:A	6,6,5	6	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|286aa|down_5|NC_019678.1_5175820_5176678_-,NA|338aa|down_8|NC_019678.1_5179131_5180145_-	NA|402aa|up_9|NC_019678.1_5146280_5147486_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|653aa|up_8|NC_019678.1_5147595_5149554_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|262aa|up_7|NC_019678.1_5149597_5150383_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|184aa|up_6|NC_019678.1_5150640_5151192_-	pfam14218, COP23, Circadian oscillating protein COP23	NA|423aa|up_5|NC_019678.1_5151573_5152842_+	PRK02507, PRK02507, proton extrusion protein PcxA; Provisional	NA|98aa|up_4|NC_019678.1_5153008_5153302_-	PRK14423, PRK14423, acylphosphatase; Provisional	NA|123aa|up_3|NC_019678.1_5153575_5153944_+	pfam08853, DUF1823, Domain of unknown function (DUF1823)	NA|394aa|up_2|NC_019678.1_5154027_5155209_+	pfam03022, MRJP, Major royal jelly protein	NA|963aa|up_1|NC_019678.1_5155647_5158536_+	PLN02843, PLN02843, isoleucyl-tRNA synthetase	RT|598aa|up_0|NC_019678.1_5159727_5161521_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|762aa|down_0|NC_019678.1_5163534_5165820_+	PRK15061, PRK15061, catalase/peroxidase	NA|295aa|down_1|NC_019678.1_5167988_5168873_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|322aa|down_2|NC_019678.1_5169616_5170582_+	pfam09150, Carot_N, Orange carotenoid protein, N-terminal	NA|874aa|down_3|NC_019678.1_5170775_5173397_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|696aa|down_4|NC_019678.1_5173666_5175754_-	pfam13191, AAA_16, AAA ATPase domain	NA|286aa|down_5|NC_019678.1_5175820_5176678_-	NA	NA|316aa|down_6|NC_019678.1_5176844_5177792_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|307aa|down_7|NC_019678.1_5178058_5178979_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|338aa|down_8|NC_019678.1_5179131_5180145_-	NA	NA|408aa|down_9|NC_019678.1_5180613_5181837_+	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	23	5166890-5167505	20,8,8	CRISPRCasFinder,CRT,PILER-CR	no	RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GTTTCCATCCCCGTTGAGGGGAGTTGGTTTGGAAAG,GTTTCCATCCCCGTTGAGGGGAGTTGGTTTGGAAAG,GTTTCCATCCCCGTTGAGGGGAGTTGGTTTGGAAAG	36,36,36	0	0	NA	NA	N:A	8,8,7	8	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|286aa|down_4|NC_019678.1_5175820_5176678_-,NA|338aa|down_7|NC_019678.1_5179131_5180145_-,NA|98aa|down_9|NC_019678.1_5182146_5182440_-	NA|653aa|up_9|NC_019678.1_5147595_5149554_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|262aa|up_8|NC_019678.1_5149597_5150383_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|184aa|up_7|NC_019678.1_5150640_5151192_-	pfam14218, COP23, Circadian oscillating protein COP23	NA|423aa|up_6|NC_019678.1_5151573_5152842_+	PRK02507, PRK02507, proton extrusion protein PcxA; Provisional	NA|98aa|up_5|NC_019678.1_5153008_5153302_-	PRK14423, PRK14423, acylphosphatase; Provisional	NA|123aa|up_4|NC_019678.1_5153575_5153944_+	pfam08853, DUF1823, Domain of unknown function (DUF1823)	NA|394aa|up_3|NC_019678.1_5154027_5155209_+	pfam03022, MRJP, Major royal jelly protein	NA|963aa|up_2|NC_019678.1_5155647_5158536_+	PLN02843, PLN02843, isoleucyl-tRNA synthetase	RT|598aa|up_1|NC_019678.1_5159727_5161521_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|762aa|up_0|NC_019678.1_5163534_5165820_+	PRK15061, PRK15061, catalase/peroxidase	NA|295aa|down_0|NC_019678.1_5167988_5168873_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|322aa|down_1|NC_019678.1_5169616_5170582_+	pfam09150, Carot_N, Orange carotenoid protein, N-terminal	NA|874aa|down_2|NC_019678.1_5170775_5173397_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|696aa|down_3|NC_019678.1_5173666_5175754_-	pfam13191, AAA_16, AAA ATPase domain	NA|286aa|down_4|NC_019678.1_5175820_5176678_-	NA	NA|316aa|down_5|NC_019678.1_5176844_5177792_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|307aa|down_6|NC_019678.1_5178058_5178979_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|338aa|down_7|NC_019678.1_5179131_5180145_-	NA	NA|408aa|down_8|NC_019678.1_5180613_5181837_+	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|98aa|down_9|NC_019678.1_5182146_5182440_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	24	5173408-5173573	21	CRISPRCasFinder	no	RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	TATTAATTAAATATTATTTAAAACTCTCACTATCTCGTTACAAGGTTCTACCT	53	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|286aa|down_1|NC_019678.1_5175820_5176678_-,NA|338aa|down_4|NC_019678.1_5179131_5180145_-,NA|98aa|down_6|NC_019678.1_5182146_5182440_-,NA|500aa|down_8|NC_019678.1_5185127_5186627_+,NA|62aa|down_9|NC_019678.1_5186983_5187169_-	NA|423aa|up_9|NC_019678.1_5151573_5152842_+	PRK02507, PRK02507, proton extrusion protein PcxA; Provisional	NA|98aa|up_8|NC_019678.1_5153008_5153302_-	PRK14423, PRK14423, acylphosphatase; Provisional	NA|123aa|up_7|NC_019678.1_5153575_5153944_+	pfam08853, DUF1823, Domain of unknown function (DUF1823)	NA|394aa|up_6|NC_019678.1_5154027_5155209_+	pfam03022, MRJP, Major royal jelly protein	NA|963aa|up_5|NC_019678.1_5155647_5158536_+	PLN02843, PLN02843, isoleucyl-tRNA synthetase	RT|598aa|up_4|NC_019678.1_5159727_5161521_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|762aa|up_3|NC_019678.1_5163534_5165820_+	PRK15061, PRK15061, catalase/peroxidase	NA|295aa|up_2|NC_019678.1_5167988_5168873_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|322aa|up_1|NC_019678.1_5169616_5170582_+	pfam09150, Carot_N, Orange carotenoid protein, N-terminal	NA|874aa|up_0|NC_019678.1_5170775_5173397_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|696aa|down_0|NC_019678.1_5173666_5175754_-	pfam13191, AAA_16, AAA ATPase domain	NA|286aa|down_1|NC_019678.1_5175820_5176678_-	NA	NA|316aa|down_2|NC_019678.1_5176844_5177792_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|307aa|down_3|NC_019678.1_5178058_5178979_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|338aa|down_4|NC_019678.1_5179131_5180145_-	NA	NA|408aa|down_5|NC_019678.1_5180613_5181837_+	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|98aa|down_6|NC_019678.1_5182146_5182440_-	NA	NA|564aa|down_7|NC_019678.1_5183043_5184735_-	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|500aa|down_8|NC_019678.1_5185127_5186627_+	NA	NA|62aa|down_9|NC_019678.1_5186983_5187169_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	25	5199481-5199561	22	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AAACTTCCTTCAAATCCGGCTCCA	24	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|115aa|up_8|NC_019678.1_5189147_5189492_+,NA|73aa|up_4|NC_019678.1_5192242_5192461_-,NA|87aa|up_2|NC_019678.1_5192943_5193204_-,NA|543aa|up_1|NC_019678.1_5193769_5195398_-,NA|98aa|down_0|NC_019678.1_5200635_5200929_-	NA|365aa|up_9|NC_019678.1_5187574_5188669_+	PRK07409, PRK07409, threonine synthase; Validated	NA|115aa|up_8|NC_019678.1_5189147_5189492_+	NA	NA|207aa|up_7|NC_019678.1_5189779_5190400_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|83aa|up_6|NC_019678.1_5190522_5190771_-	pfam10718, Ycf34, Hypothetical chloroplast protein Ycf34	NA|425aa|up_5|NC_019678.1_5190862_5192137_+	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|73aa|up_4|NC_019678.1_5192242_5192461_-	NA	NA|102aa|up_3|NC_019678.1_5192541_5192847_-	pfam11378, DUF3181, Protein of unknown function (DUF3181)	NA|87aa|up_2|NC_019678.1_5192943_5193204_-	NA	NA|543aa|up_1|NC_019678.1_5193769_5195398_-	NA	NA|1035aa|up_0|NC_019678.1_5195675_5198780_-	cd07998, WGR_DNA_ligase, WGR domain of bacterial DNA ligases	NA|98aa|down_0|NC_019678.1_5200635_5200929_-	NA	NA|257aa|down_1|NC_019678.1_5201368_5202139_-	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain	NA|201aa|down_2|NC_019678.1_5202135_5202738_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|152aa|down_3|NC_019678.1_5202813_5203269_-	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|181aa|down_4|NC_019678.1_5203411_5203954_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|52aa|down_5|NC_019678.1_5203968_5204124_-	pfam11688, DUF3285, Protein of unknown function (DUF3285)	NA|372aa|down_6|NC_019678.1_5204346_5205463_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|263aa|down_7|NC_019678.1_5205694_5206483_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|245aa|down_8|NC_019678.1_5207049_5207784_-	pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1	NA|263aa|down_9|NC_019678.1_5208129_5208918_+	PRK07408, PRK07408, RNA polymerase sigma factor SigF; Reviewed
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	26	6181145-6188351	9,23,9,10	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,RT,cas1,cas2,csx3,cas10,cmr3gr5	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type III-B,Type III-D,,Type III-A,Type III-C	CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC,CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC,CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC,CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC	36,36,36,36	0	0	NA	NA	N:A	98,100,100,98	100	,TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|105aa|up_9|NC_019678.1_6166654_6166969_-,NA|82aa|up_7|NC_019678.1_6173938_6174184_-,NA|145aa|up_6|NC_019678.1_6174283_6174718_-,NA|119aa|up_5|NC_019678.1_6174985_6175342_-,NA|218aa|down_3|NC_019678.1_6194750_6195404_-,NA|116aa|down_6|NC_019678.1_6196874_6197222_+	NA|105aa|up_9|NC_019678.1_6166654_6166969_-	NA	NA|119aa|up_8|NC_019678.1_6168046_6168403_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|82aa|up_7|NC_019678.1_6173938_6174184_-	NA	NA|145aa|up_6|NC_019678.1_6174283_6174718_-	NA	NA|119aa|up_5|NC_019678.1_6174985_6175342_-	NA	WYL|510aa|up_4|NC_019678.1_6175492_6177022_+	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family	NA|197aa|up_3|NC_019678.1_6177291_6177882_+	pfam13328, HD_4, HD domain	RT|321aa|up_2|NC_019678.1_6178419_6179382_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas1|335aa|up_1|NC_019678.1_6179546_6180551_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|92aa|up_0|NC_019678.1_6180649_6180925_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|909aa|down_0|NC_019678.1_6188914_6191641_+	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|378aa|down_1|NC_019678.1_6191637_6192771_+	pfam13401, AAA_22, AAA domain	NA|466aa|down_2|NC_019678.1_6192760_6194158_+	pfam06527, TniQ, TniQ	NA|218aa|down_3|NC_019678.1_6194750_6195404_-	NA	NA|151aa|down_4|NC_019678.1_6195458_6195911_-	pfam13430, DUF4112, Domain of unknown function (DUF4112)	NA|192aa|down_5|NC_019678.1_6196256_6196832_+	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|116aa|down_6|NC_019678.1_6196874_6197222_+	NA	NA|73aa|down_7|NC_019678.1_6197382_6197601_+	pfam14453, ThiS-like, ThiS-like ubiquitin	NA|162aa|down_8|NC_019678.1_6197626_6198112_+	pfam14462, Prok-E2_E, Prokaryotic E2 family E	NA|464aa|down_9|NC_019678.1_6198339_6199731_+	pfam00899, ThiF, ThiF family
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	27	6194395-6194646	11,24,10	PILER-CR,CRISPRCasFinder,CRT	no	WYL,RT,cas1,cas2,csx3,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm6	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type III-B,Type III-D,Type III-C,Type III-A	CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC,CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC,CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC	36,36,36	0	0	NA	NA	N:A	3,3,3	3	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|145aa|up_9|NC_019678.1_6174283_6174718_-,NA|119aa|up_8|NC_019678.1_6174985_6175342_-,NA|218aa|down_0|NC_019678.1_6194750_6195404_-,NA|116aa|down_3|NC_019678.1_6196874_6197222_+,NA|508aa|down_7|NC_019678.1_6200523_6202047_-,NA|56aa|down_8|NC_019678.1_6202159_6202327_+,csx3|330aa|down_9|NC_019678.1_6202967_6203957_+	NA|145aa|up_9|NC_019678.1_6174283_6174718_-	NA	NA|119aa|up_8|NC_019678.1_6174985_6175342_-	NA	WYL|510aa|up_7|NC_019678.1_6175492_6177022_+	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family	NA|197aa|up_6|NC_019678.1_6177291_6177882_+	pfam13328, HD_4, HD domain	RT|321aa|up_5|NC_019678.1_6178419_6179382_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas1|335aa|up_4|NC_019678.1_6179546_6180551_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|92aa|up_3|NC_019678.1_6180649_6180925_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|909aa|up_2|NC_019678.1_6188914_6191641_+	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|378aa|up_1|NC_019678.1_6191637_6192771_+	pfam13401, AAA_22, AAA domain	NA|466aa|up_0|NC_019678.1_6192760_6194158_+	pfam06527, TniQ, TniQ	NA|218aa|down_0|NC_019678.1_6194750_6195404_-	NA	NA|151aa|down_1|NC_019678.1_6195458_6195911_-	pfam13430, DUF4112, Domain of unknown function (DUF4112)	NA|192aa|down_2|NC_019678.1_6196256_6196832_+	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|116aa|down_3|NC_019678.1_6196874_6197222_+	NA	NA|73aa|down_4|NC_019678.1_6197382_6197601_+	pfam14453, ThiS-like, ThiS-like ubiquitin	NA|162aa|down_5|NC_019678.1_6197626_6198112_+	pfam14462, Prok-E2_E, Prokaryotic E2 family E	NA|464aa|down_6|NC_019678.1_6198339_6199731_+	pfam00899, ThiF, ThiF family	NA|508aa|down_7|NC_019678.1_6200523_6202047_-	NA	NA|56aa|down_8|NC_019678.1_6202159_6202327_+	NA	csx3|330aa|down_9|NC_019678.1_6202967_6203957_+	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	28	6212788-6213336	25,11,12	CRISPRCasFinder,CRT,PILER-CR	no	csx3,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm6	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Type III-B,Type III-D, Type III-C?,Type III-A,Type III-C	GTTTCCAACTAATCCGACTTAATCCAGTCGGCGGAAG,GTTTCCAACTAATCCGACTTAATCCAGTCGGCGGAAG,CTTCCGCCGACTGGATTAAGTCGGATTAGTTGGAAAC	37,37,37	0	0	NA	NA	N:A	7,7,6	7	TypeIII-B,TypeIII-D,TypeIII-C?,TypeIII-A,TypeIII-C	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|508aa|up_9|NC_019678.1_6200523_6202047_-,NA|56aa|up_8|NC_019678.1_6202159_6202327_+,csx3|330aa|up_7|NC_019678.1_6202967_6203957_+,NA|94aa|up_6|NC_019678.1_6204847_6205129_+,cmr5gr11|131aa|up_2|NC_019678.1_6209234_6209627_+,NA|55aa|down_2|NC_019678.1_6217151_6217316_+,NA|88aa|down_3|NC_019678.1_6217944_6218208_+,NA|286aa|down_6|NC_019678.1_6220065_6220923_+,NA|132aa|down_7|NC_019678.1_6221067_6221463_+	NA|508aa|up_9|NC_019678.1_6200523_6202047_-	NA	NA|56aa|up_8|NC_019678.1_6202159_6202327_+	NA	csx3|330aa|up_7|NC_019678.1_6202967_6203957_+	NA	NA|94aa|up_6|NC_019678.1_6204847_6205129_+	NA	cas10|622aa|up_5|NC_019678.1_6205328_6207194_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|381aa|up_4|NC_019678.1_6207181_6208324_+	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cmr4gr7|270aa|up_3|NC_019678.1_6208422_6209232_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|131aa|up_2|NC_019678.1_6209234_6209627_+	NA	NA|559aa|up_1|NC_019678.1_6209849_6211526_+	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	csm6|380aa|up_0|NC_019678.1_6211553_6212693_+	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|242aa|down_0|NC_019678.1_6213595_6214321_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|211aa|down_1|NC_019678.1_6216316_6216949_-	pfam11043, DUF2856, Protein of unknown function (DUF2856)	NA|55aa|down_2|NC_019678.1_6217151_6217316_+	NA	NA|88aa|down_3|NC_019678.1_6217944_6218208_+	NA	NA|65aa|down_4|NC_019678.1_6218411_6218606_+	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	NA|161aa|down_5|NC_019678.1_6218980_6219463_+	cd00719, GIY-YIG_SF, GIY-YIG nuclease domain superfamily	NA|286aa|down_6|NC_019678.1_6220065_6220923_+	NA	NA|132aa|down_7|NC_019678.1_6221067_6221463_+	NA	NA|142aa|down_8|NC_019678.1_6221462_6221888_+	pfam01844, HNH, HNH endonuclease	NA|206aa|down_9|NC_019678.1_6222410_6223028_-	pfam05685, Uma2, Putative restriction endonuclease
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	29	6307708-6307948	26	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	TCTTTTCAACCCGCCTAAAGCTT	23	0	0	NA	NA	N:A	3	3	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA,NA|132aa|down_6|NC_019678.1_6317365_6317761_+,NA|198aa|down_7|NC_019678.1_6317769_6318363_+,NA|390aa|down_8|NC_019678.1_6318425_6319595_-,NA|106aa|down_9|NC_019678.1_6319704_6320022_-	NA|611aa|up_9|NC_019678.1_6298294_6300127_+	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|146aa|up_8|NC_019678.1_6300398_6300836_+	pfam14343, PrcB_C, PrcB C-terminal	NA|500aa|up_7|NC_019678.1_6300908_6302408_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|75aa|up_6|NC_019678.1_6302472_6302697_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|175aa|up_5|NC_019678.1_6302888_6303413_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|80aa|up_4|NC_019678.1_6303590_6303830_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|75aa|up_3|NC_019678.1_6303833_6304058_+	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|352aa|up_2|NC_019678.1_6304083_6305139_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|258aa|up_1|NC_019678.1_6305267_6306041_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|307aa|up_0|NC_019678.1_6306037_6306958_-	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins	NA|149aa|down_0|NC_019678.1_6309485_6309932_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|514aa|down_1|NC_019678.1_6310104_6311646_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|430aa|down_2|NC_019678.1_6311648_6312938_+	cd17261, RMtype1_S_EcoKI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli str	NA|1046aa|down_3|NC_019678.1_6312934_6316072_+	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|114aa|down_4|NC_019678.1_6316068_6316410_+	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|262aa|down_5|NC_019678.1_6316575_6317361_+	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|132aa|down_6|NC_019678.1_6317365_6317761_+	NA	NA|198aa|down_7|NC_019678.1_6317769_6318363_+	NA	NA|390aa|down_8|NC_019678.1_6318425_6319595_-	NA	NA|106aa|down_9|NC_019678.1_6319704_6320022_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	30	6326108-6326430	27,12,13	CRISPRCasFinder,CRT,PILER-CR	no	RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GTTTCCGTCCCCGTGAAGGGGAATTAATTTAAAAC,GTTTCCGTCCCCGTGAAGGGGAATTAATTTAAAAC,GTTTCCGTCCCCGTGAAGGGGAATTAATTTAAAAC	35,35,35	0	0	NA	NA	N:A	4,4,3	4	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|132aa|up_9|NC_019678.1_6317365_6317761_+,NA|198aa|up_8|NC_019678.1_6317769_6318363_+,NA|390aa|up_7|NC_019678.1_6318425_6319595_-,NA|106aa|up_6|NC_019678.1_6319704_6320022_-,NA|188aa|up_5|NC_019678.1_6320033_6320597_-,NA|121aa|down_1|NC_019678.1_6329970_6330333_+,NA|72aa|down_2|NC_019678.1_6330749_6330965_-,NA|47aa|down_7|NC_019678.1_6339627_6339768_+,NA|61aa|down_9|NC_019678.1_6341350_6341533_-	NA|132aa|up_9|NC_019678.1_6317365_6317761_+	NA	NA|198aa|up_8|NC_019678.1_6317769_6318363_+	NA	NA|390aa|up_7|NC_019678.1_6318425_6319595_-	NA	NA|106aa|up_6|NC_019678.1_6319704_6320022_-	NA	NA|188aa|up_5|NC_019678.1_6320033_6320597_-	NA	NA|59aa|up_4|NC_019678.1_6320777_6320954_+	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	NA|173aa|up_3|NC_019678.1_6320995_6321514_-	pfam06527, TniQ, TniQ	NA|279aa|up_2|NC_019678.1_6321513_6322350_-	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]	NA|568aa|up_1|NC_019678.1_6322352_6324056_-	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|541aa|up_0|NC_019678.1_6324328_6325951_-	pfam13424, TPR_12, Tetratricopeptide repeat	RT|598aa|down_0|NC_019678.1_6326546_6328340_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|121aa|down_1|NC_019678.1_6329970_6330333_+	NA	NA|72aa|down_2|NC_019678.1_6330749_6330965_-	NA	NA|410aa|down_3|NC_019678.1_6330984_6332214_-	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain	NA|762aa|down_4|NC_019678.1_6332296_6334582_+	TIGR02243, hypothetical_protein_SCD8A	NA|328aa|down_5|NC_019678.1_6334854_6335838_+	TIGR02242, putative_secreted_protein, phage tail protein domain	NA|184aa|down_6|NC_019678.1_6336496_6337048_-	pfam14015, DUF4231, Protein of unknown function (DUF4231)	NA|47aa|down_7|NC_019678.1_6339627_6339768_+	NA	NA|315aa|down_8|NC_019678.1_6340264_6341209_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|61aa|down_9|NC_019678.1_6341350_6341533_-	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	31	6328927-6329393	28,13,14	CRISPRCasFinder,CRT,PILER-CR	no	RT	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GTTTCCATCCCCGTAAGGGGTTAAGGAATTAAAAC,GTTTCCATCCCCGTAAGGGGTTAAGGAATTAAAAC,GTTTCCATCCCCGTAAGGGGTTAAGGAATTAAAAC	35,35,35	0	0	NA	NA	N:A	6,6,5	6	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|198aa|up_9|NC_019678.1_6317769_6318363_+,NA|390aa|up_8|NC_019678.1_6318425_6319595_-,NA|106aa|up_7|NC_019678.1_6319704_6320022_-,NA|188aa|up_6|NC_019678.1_6320033_6320597_-,NA|121aa|down_0|NC_019678.1_6329970_6330333_+,NA|72aa|down_1|NC_019678.1_6330749_6330965_-,NA|47aa|down_6|NC_019678.1_6339627_6339768_+,NA|61aa|down_8|NC_019678.1_6341350_6341533_-	NA|198aa|up_9|NC_019678.1_6317769_6318363_+	NA	NA|390aa|up_8|NC_019678.1_6318425_6319595_-	NA	NA|106aa|up_7|NC_019678.1_6319704_6320022_-	NA	NA|188aa|up_6|NC_019678.1_6320033_6320597_-	NA	NA|59aa|up_5|NC_019678.1_6320777_6320954_+	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	NA|173aa|up_4|NC_019678.1_6320995_6321514_-	pfam06527, TniQ, TniQ	NA|279aa|up_3|NC_019678.1_6321513_6322350_-	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]	NA|568aa|up_2|NC_019678.1_6322352_6324056_-	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|541aa|up_1|NC_019678.1_6324328_6325951_-	pfam13424, TPR_12, Tetratricopeptide repeat	RT|598aa|up_0|NC_019678.1_6326546_6328340_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|121aa|down_0|NC_019678.1_6329970_6330333_+	NA	NA|72aa|down_1|NC_019678.1_6330749_6330965_-	NA	NA|410aa|down_2|NC_019678.1_6330984_6332214_-	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain	NA|762aa|down_3|NC_019678.1_6332296_6334582_+	TIGR02243, hypothetical_protein_SCD8A	NA|328aa|down_4|NC_019678.1_6334854_6335838_+	TIGR02242, putative_secreted_protein, phage tail protein domain	NA|184aa|down_5|NC_019678.1_6336496_6337048_-	pfam14015, DUF4231, Protein of unknown function (DUF4231)	NA|47aa|down_6|NC_019678.1_6339627_6339768_+	NA	NA|315aa|down_7|NC_019678.1_6340264_6341209_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|61aa|down_8|NC_019678.1_6341350_6341533_-	NA	NA|610aa|down_9|NC_019678.1_6341684_6343514_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	32	6467626-6467723	29	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AAAATCCATCCGTTATCCAAAACCAACACATTCGTTA	37	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|225aa|up_3|NC_019678.1_6462058_6462733_+,NA|169aa|down_4|NC_019678.1_6473453_6473960_-,NA|160aa|down_7|NC_019678.1_6478019_6478499_-	NA|99aa|up_9|NC_019678.1_6455887_6456184_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|278aa|up_8|NC_019678.1_6456624_6457458_+	cd16148, sulfatase_like, uncharacterized sulfatase subfamily	NA|455aa|up_7|NC_019678.1_6457571_6458936_+	PRK08208, PRK08208, coproporphyrinogen III oxidase family protein	NA|420aa|up_6|NC_019678.1_6459109_6460369_+	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	NA|293aa|up_5|NC_019678.1_6460552_6461431_+	COG2100, COG2100, Predicted Fe-S oxidoreductase [General function prediction only]	NA|73aa|up_4|NC_019678.1_6461613_6461832_+	pfam11211, DUF2997, Protein of unknown function (DUF2997)	NA|225aa|up_3|NC_019678.1_6462058_6462733_+	NA	NA|520aa|up_2|NC_019678.1_6462850_6464410_+	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|397aa|up_1|NC_019678.1_6464663_6465854_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|400aa|up_0|NC_019678.1_6466424_6467624_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|136aa|down_0|NC_019678.1_6467780_6468188_-	pfam06868, DUF1257, Protein of unknown function (DUF1257)	NA|134aa|down_1|NC_019678.1_6468435_6468837_-	pfam06868, DUF1257, Protein of unknown function (DUF1257)	NA|541aa|down_2|NC_019678.1_6468967_6470590_-	CHL00195, ycf46, Ycf46; Provisional	NA|556aa|down_3|NC_019678.1_6471266_6472934_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|169aa|down_4|NC_019678.1_6473453_6473960_-	NA	NA|540aa|down_5|NC_019678.1_6474296_6475916_-	cd03398, PAP2_haloperoxidase, PAP2, haloperoxidase_like subfamily	NA|506aa|down_6|NC_019678.1_6476235_6477753_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|160aa|down_7|NC_019678.1_6478019_6478499_-	NA	NA|900aa|down_8|NC_019678.1_6479003_6481703_-	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1067aa|down_9|NC_019678.1_6481875_6485076_-	pfam05860, Haemagg_act, haemagglutination activity domain
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	33	6751356-6752970	15,30,14	PILER-CR,CRISPRCasFinder,CRT	no	cas14k	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Unclear	GTTGAAACTCACCTTAATCCCTATTAGGG----------ATTGAAAC,GTTGAAACTCACCTTAATCCCTATTAGGGATTGAAAC,GTTGAAACTCACCTTAATCCCTATTAGGGATTGAAAC	47,37,37	0	0	NA	NA	N:A	22,22,22	22	TypeV	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|75aa|up_5|NC_019678.1_6744961_6745186_+,NA|427aa|up_4|NC_019678.1_6745070_6746351_-,NA|165aa|up_2|NC_019678.1_6747819_6748314_+,NA|134aa|down_1|NC_019678.1_6754050_6754452_-,NA|145aa|down_3|NC_019678.1_6755837_6756272_-,NA|267aa|down_5|NC_019678.1_6757296_6758097_+	NA|224aa|up_9|NC_019678.1_6740341_6741013_-	PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein	NA|259aa|up_8|NC_019678.1_6741224_6742001_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|258aa|up_7|NC_019678.1_6742473_6743247_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|389aa|up_6|NC_019678.1_6743682_6744849_+	COG2385, SpoIID, Sporulation protein and related proteins [Cell division and chromosome partitioning]	NA|75aa|up_5|NC_019678.1_6744961_6745186_+	NA	NA|427aa|up_4|NC_019678.1_6745070_6746351_-	NA	NA|316aa|up_3|NC_019678.1_6746637_6747585_-	TIGR02651, Ribonuclease_Z, ribonuclease Z	NA|165aa|up_2|NC_019678.1_6747819_6748314_+	NA	NA|400aa|up_1|NC_019678.1_6748343_6749543_-	cd05199, SDH_like, Saccharopine Dehydrogenase like proteins	NA|375aa|up_0|NC_019678.1_6749694_6750819_-	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation	NA|339aa|down_0|NC_019678.1_6752990_6754007_-	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain	NA|134aa|down_1|NC_019678.1_6754050_6754452_-	NA	NA|138aa|down_2|NC_019678.1_6755095_6755509_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|145aa|down_3|NC_019678.1_6755837_6756272_-	NA	NA|180aa|down_4|NC_019678.1_6756430_6756970_-	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated	NA|267aa|down_5|NC_019678.1_6757296_6758097_+	NA	NA|310aa|down_6|NC_019678.1_6758282_6759212_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|314aa|down_7|NC_019678.1_6759351_6760293_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|197aa|down_8|NC_019678.1_6760393_6760984_+	PRK10502, PRK10502, putative acyl transferase; Provisional	NA|1040aa|down_9|NC_019678.1_6761089_6764209_-	pfam12965, DUF3854, Domain of unknown function (DUF3854)
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	34	6795034-6795185	31	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	TAACCTCACCCCGCCCTACGGGCACCCCTCTCCTTGTTAAGGTAGAGGGG	50	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|240aa|up_5|NC_019678.1_6787374_6788094_+,NA|103aa|down_0|NC_019678.1_6795274_6795583_-,NA|83aa|down_9|NC_019678.1_6805092_6805341_+	NA|285aa|up_9|NC_019678.1_6783985_6784840_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|197aa|up_8|NC_019678.1_6785052_6785643_+	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA|283aa|up_7|NC_019678.1_6785747_6786596_-	pfam01738, DLH, Dienelactone hydrolase family	NA|168aa|up_6|NC_019678.1_6786669_6787173_-	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|240aa|up_5|NC_019678.1_6787374_6788094_+	NA	NA|412aa|up_4|NC_019678.1_6788378_6789614_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|up_3|NC_019678.1_6790186_6790876_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|315aa|up_2|NC_019678.1_6790996_6791941_-	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|364aa|up_1|NC_019678.1_6792296_6793388_+	pfam18087, RuBisCo_chap_C, Rubisco Assembly chaperone C-terminal domain	NA|510aa|up_0|NC_019678.1_6793503_6795033_+	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|103aa|down_0|NC_019678.1_6795274_6795583_-	NA	NA|63aa|down_1|NC_019678.1_6796693_6796882_+	pfam13318, DUF4089, Protein of unknown function (DUF4089)	NA|456aa|down_2|NC_019678.1_6796908_6798276_+	PRK09201, PRK09201, AtzE family amidohydrolase	NA|150aa|down_3|NC_019678.1_6798557_6799007_-	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|487aa|down_4|NC_019678.1_6799802_6801263_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|464aa|down_5|NC_019678.1_6801285_6802677_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|137aa|down_6|NC_019678.1_6803341_6803752_+	pfam07386, DUF1499, Protein of unknown function (DUF1499)	NA|157aa|down_7|NC_019678.1_6803784_6804255_-	COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair]	NA|169aa|down_8|NC_019678.1_6804303_6804810_-	cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases	NA|83aa|down_9|NC_019678.1_6805092_6805341_+	NA
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	35	7032598-7032735	32	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AAGGAGAGGGGTGCCCGGAAGGGCGGGGTGAGGTTTTCT	39	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|86aa|up_3|NC_019678.1_7025334_7025592_-,NA|189aa|down_3|NC_019678.1_7037955_7038522_-,NA|190aa|down_6|NC_019678.1_7042332_7042902_-,NA|191aa|down_7|NC_019678.1_7043106_7043679_-,NA|145aa|down_8|NC_019678.1_7044286_7044721_-	NA|198aa|up_9|NC_019678.1_7016734_7017328_-	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|370aa|up_8|NC_019678.1_7017414_7018524_-	pfam13478, XdhC_C, XdhC Rossmann domain	NA|714aa|up_7|NC_019678.1_7018721_7020863_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|328aa|up_6|NC_019678.1_7020973_7021957_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|194aa|up_5|NC_019678.1_7022113_7022695_-	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|467aa|up_4|NC_019678.1_7023589_7024990_+	TIGR00400, mgtE, Mg2+ transporter (mgtE)	NA|86aa|up_3|NC_019678.1_7025334_7025592_-	NA	NA|533aa|up_2|NC_019678.1_7025823_7027422_+	pfam18105, PGM1_C, PGM1 C-terminal domain	NA|577aa|up_1|NC_019678.1_7027789_7029520_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|188aa|up_0|NC_019678.1_7029959_7030523_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|373aa|down_0|NC_019678.1_7033969_7035088_-	COG4639, COG4639, Predicted kinase [General function prediction only]	NA|283aa|down_1|NC_019678.1_7035167_7036016_-	pfam09414, RNA_ligase, RNA ligase	NA|408aa|down_2|NC_019678.1_7036439_7037663_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|189aa|down_3|NC_019678.1_7037955_7038522_-	NA	NA|237aa|down_4|NC_019678.1_7038983_7039694_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|520aa|down_5|NC_019678.1_7040671_7042231_+	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|190aa|down_6|NC_019678.1_7042332_7042902_-	NA	NA|191aa|down_7|NC_019678.1_7043106_7043679_-	NA	NA|145aa|down_8|NC_019678.1_7044286_7044721_-	NA	NA|146aa|down_9|NC_019678.1_7044713_7045151_-	COG2259, COG2259, Predicted membrane protein [Function unknown]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	36	7084754-7084859	33	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	GGAAATCGTCCTCAAGAAATAGCTCAAG	28	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|346aa|up_9|NC_019678.1_7072607_7073645_+,NA|91aa|up_3|NC_019678.1_7080955_7081228_-,NA|149aa|up_0|NC_019678.1_7083662_7084109_+,NA|346aa|down_8|NC_019678.1_7095464_7096502_+	NA|346aa|up_9|NC_019678.1_7072607_7073645_+	NA	NA|709aa|up_8|NC_019678.1_7074234_7076361_+	pfam06537, DHOR, Di-haem oxidoreductase, putative peroxidase	NA|515aa|up_7|NC_019678.1_7076755_7078300_-	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|247aa|up_6|NC_019678.1_7078365_7079106_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|235aa|up_5|NC_019678.1_7079280_7079985_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|255aa|up_4|NC_019678.1_7080102_7080867_-	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated	NA|91aa|up_3|NC_019678.1_7080955_7081228_-	NA	NA|219aa|up_2|NC_019678.1_7081472_7082129_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|425aa|up_1|NC_019678.1_7082128_7083403_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|149aa|up_0|NC_019678.1_7083662_7084109_+	NA	NA|422aa|down_0|NC_019678.1_7085935_7087201_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|221aa|down_1|NC_019678.1_7087223_7087886_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|171aa|down_2|NC_019678.1_7087891_7088404_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|498aa|down_3|NC_019678.1_7088480_7089974_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|299aa|down_4|NC_019678.1_7090212_7091109_-	cd13613, PBP2_Opu_like_2, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold	NA|212aa|down_5|NC_019678.1_7091395_7092031_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|249aa|down_6|NC_019678.1_7092146_7092893_-	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter	NA|470aa|down_7|NC_019678.1_7093950_7095360_+	cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase	NA|346aa|down_8|NC_019678.1_7095464_7096502_+	NA	NA|301aa|down_9|NC_019678.1_7096665_7097568_-	pfam06051, DUF928, Domain of Unknown Function (DUF928)
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	37	7334255-7334348	34	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	AATGGTGCGTTACGGCATTTTTTA	24	0	0	NA	NA	N:A	1	1	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|169aa|up_3|NC_019678.1_7327576_7328083_-,NA|67aa|down_3|NC_019678.1_7337555_7337756_-	NA|309aa|up_9|NC_019678.1_7316487_7317414_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|325aa|up_8|NC_019678.1_7317816_7318791_+	cd01828, sialate_O-acetylesterase_like2, sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases	NA|589aa|up_7|NC_019678.1_7320738_7322505_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|719aa|up_6|NC_019678.1_7323057_7325214_-	TIGR00992, chloroplast_import-associated_channel_homolog, chloroplast envelope protein translocase, IAP75 family	NA|456aa|up_5|NC_019678.1_7325381_7326749_+	TIGR03492, TIGR03492, conserved hypothetical protein	NA|183aa|up_4|NC_019678.1_7326921_7327470_-	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed	NA|169aa|up_3|NC_019678.1_7327576_7328083_-	NA	NA|460aa|up_2|NC_019678.1_7328520_7329900_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|174aa|up_1|NC_019678.1_7330010_7330532_+	pfam14218, COP23, Circadian oscillating protein COP23	NA|1025aa|up_0|NC_019678.1_7330591_7333666_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|191aa|down_0|NC_019678.1_7334495_7335068_-	pfam12527, DUF3727, Protein of unknown function (DUF3727)	NA|171aa|down_1|NC_019678.1_7335229_7335742_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|419aa|down_2|NC_019678.1_7335746_7337003_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|67aa|down_3|NC_019678.1_7337555_7337756_-	NA	NA|574aa|down_4|NC_019678.1_7337917_7339639_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|991aa|down_5|NC_019678.1_7340153_7343126_+	pfam16313, DUF4953, Met-zincin	NA|791aa|down_6|NC_019678.1_7343284_7345657_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|251aa|down_7|NC_019678.1_7345844_7346597_-	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433	NA|246aa|down_8|NC_019678.1_7347361_7348099_-	pfam09353, DUF1995, Domain of unknown function (DUF1995)	NA|390aa|down_9|NC_019678.1_7348266_7349436_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_000316665.1_ASM31666v1	NC_019678	Rivularia sp. PCC 7116, complete genome	38	7450340-7451660	16,35,15	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	Orphan	GTT----------TCAATCCCTAATAGGGATTAGAGGTTATTTCAAC,GTTGAAATAACCTCTAATCCCTATTAGGGATTGAAAC,GTTGAAATAACCTCTAATCCCTATTAGGGATTGAAAC	47,37,37	0	0	NA	NA	N:A	18,18,18	18	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|47aa|up_5|NC_019678.1_7442914_7443055_-,NA|382aa|up_2|NC_019678.1_7447280_7448426_+,NA|93aa|down_1|NC_019678.1_7453093_7453372_-	NA|416aa|up_9|NC_019678.1_7437013_7438261_-	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|402aa|up_8|NC_019678.1_7438442_7439648_-	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|433aa|up_7|NC_019678.1_7440406_7441705_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|278aa|up_6|NC_019678.1_7441882_7442716_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|47aa|up_5|NC_019678.1_7442914_7443055_-	NA	NA|375aa|up_4|NC_019678.1_7444405_7445530_+	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]	NA|429aa|up_3|NC_019678.1_7445640_7446927_+	cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)	NA|382aa|up_2|NC_019678.1_7447280_7448426_+	NA	NA|324aa|up_1|NC_019678.1_7448422_7449394_+	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|170aa|up_0|NC_019678.1_7449595_7450105_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|304aa|down_0|NC_019678.1_7452167_7453079_-	pfam04187, Cofac_haem_bdg, Haem-binding uptake, Tiki superfamily, ChaN	NA|93aa|down_1|NC_019678.1_7453093_7453372_-	NA	NA|330aa|down_2|NC_019678.1_7453498_7454488_-	TIGR02056, chlorophyll_synthase_33_kD_subunit, chlorophyll synthase, ChlG	NA|367aa|down_3|NC_019678.1_7454684_7455785_-	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|66aa|down_4|NC_019678.1_7455856_7456054_-	pfam11061, DUF2862, Protein of unknown function (DUF2862)	NA|286aa|down_5|NC_019678.1_7456416_7457274_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|358aa|down_6|NC_019678.1_7457314_7458388_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|435aa|down_7|NC_019678.1_7458455_7459760_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|601aa|down_8|NC_019678.1_7459803_7461606_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|473aa|down_9|NC_019678.1_7461673_7463092_+	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_000316665.1_ASM31666v1	NC_019679	Rivularia sp. PCC 7116 plasmid pRIV7116.01, complete sequence	1	21556-22094	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no			Orphan	CTTTACTAACCCCT-AATCCCTAATAGGG----------ATGGAAAC,CTTTACTAACCCCTAATCCCTAATAGGGATGGAAAC,CTTTACTAACCCCTAATCCCTAATAGGGATGGAAAC	47,36,36	0	0	NA	NA	N:A	7,7,7	7	Orphan	cas3,DEDDh,WYL,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1,cas2,csa3,PD-DExK,c2c9_V-U4,DinG,cas14k,Cas14c_CAS-V-F,cas8b3,cas7,cas5,RT,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21,cas14j,csx3,cmr3gr5,cmr4gr7,cmr5gr11,csm6,2OG_CAS	NA|119aa|up_9|NC_019679.1_13925_14282_+,NA|164aa|up_8|NC_019679.1_14329_14821_-,NA|265aa|up_7|NC_019679.1_14823_15618_-,NA|197aa|up_5|NC_019679.1_17140_17731_-,NA|152aa|up_3|NC_019679.1_19680_20136_-,NA|87aa|up_2|NC_019679.1_20255_20516_-,NA|80aa|up_1|NC_019679.1_20537_20777_-,NA|86aa|up_0|NC_019679.1_20766_21024_-,NA	NA|119aa|up_9|NC_019679.1_13925_14282_+	NA	NA|164aa|up_8|NC_019679.1_14329_14821_-	NA	NA|265aa|up_7|NC_019679.1_14823_15618_-	NA	NA|507aa|up_6|NC_019679.1_15610_17131_-	PHA02533, 17, large terminase protein; Provisional	NA|197aa|up_5|NC_019679.1_17140_17731_-	NA	NA|631aa|up_4|NC_019679.1_17733_19626_-	pfam16684, Telomere_res, Telomere resolvase	NA|152aa|up_3|NC_019679.1_19680_20136_-	NA	NA|87aa|up_2|NC_019679.1_20255_20516_-	NA	NA|80aa|up_1|NC_019679.1_20537_20777_-	NA	NA|86aa|up_0|NC_019679.1_20766_21024_-	NA	NA|163aa|down_0|NC_019679.1_22194_22683_-	pfam10544, T5orf172, T5orf172 domain	NA|409aa|down_1|NC_019679.1_22776_24003_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|777aa|down_2|NC_019679.1_24495_26826_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
