assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000316175.1_ASM31617v1	NC_019670	Pseudomonas sp. UW4, complete sequence	1	305929-306032	1	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	Orphan	TGCGGTGTGAGCCTGGTGTAAAGA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	NA|147aa|up_0|NC_019670.1_305428_305869_+,NA	NA|252aa|up_9|NC_019670.1_297375_298131_+	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	NA|259aa|up_8|NC_019670.1_298274_299051_-	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|439aa|up_7|NC_019670.1_299053_300370_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|470aa|up_6|NC_019670.1_300401_301811_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|510aa|up_5|NC_019670.1_301948_303478_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|138aa|up_4|NC_019670.1_303630_304044_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|85aa|up_3|NC_019670.1_304045_304300_+	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|162aa|up_2|NC_019670.1_304356_304842_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|152aa|up_1|NC_019670.1_304974_305430_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|147aa|up_0|NC_019670.1_305428_305869_+	NA	NA|479aa|down_0|NC_019670.1_306405_307842_-	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|362aa|down_1|NC_019670.1_307838_308924_-	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|172aa|down_2|NC_019670.1_309231_309747_-	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|469aa|down_3|NC_019670.1_310043_311450_-	PRK09469, glnA, glutamate--ammonia ligase	NA|485aa|down_4|NC_019670.1_311778_313233_+	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional	NA|607aa|down_5|NC_019670.1_313372_315193_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|146aa|down_6|NC_019670.1_315412_315850_-	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|817aa|down_7|NC_019670.1_316105_318556_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|1068aa|down_8|NC_019670.1_318712_321916_+	COG5373, COG5373, Predicted membrane protein [Function unknown]	NA|458aa|down_9|NC_019670.1_321912_323286_+	pfam13163, DUF3999, Protein of unknown function (DUF3999)
GCF_000316175.1_ASM31617v1	NC_019670	Pseudomonas sp. UW4, complete sequence	2	2888440-2888532	2	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	Orphan	TCCCCTGTAGGAGCTGGCTTGCCAG	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	NA,NA|70aa|down_0|NC_019670.1_2888709_2888919_-,NA|61aa|down_2|NC_019670.1_2891008_2891191_-,NA|89aa|down_7|NC_019670.1_2897212_2897479_-	NA|258aa|up_9|NC_019670.1_2878287_2879061_+	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|384aa|up_8|NC_019670.1_2879274_2880426_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|369aa|up_7|NC_019670.1_2880429_2881536_-	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|297aa|up_6|NC_019670.1_2881700_2882591_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|364aa|up_5|NC_019670.1_2882692_2883784_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|320aa|up_4|NC_019670.1_2883801_2884761_+	PRK02190, PRK02190, agmatinase; Provisional	NA|351aa|up_3|NC_019670.1_2884877_2885930_-	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR)	NA|373aa|up_2|NC_019670.1_2886088_2887207_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|194aa|up_1|NC_019670.1_2887222_2887804_+	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|up_0|NC_019670.1_2887921_2888413_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|70aa|down_0|NC_019670.1_2888709_2888919_-	NA	NA|579aa|down_1|NC_019670.1_2889072_2890809_-	NF012179, CptA, phosphoethanolamine transferase CptA	NA|61aa|down_2|NC_019670.1_2891008_2891191_-	NA	NA|327aa|down_3|NC_019670.1_2891464_2892445_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|505aa|down_4|NC_019670.1_2892441_2893956_+	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase	NA|501aa|down_5|NC_019670.1_2894055_2895558_-	PRK09547, nhaB, sodium/proton antiporter NhaB	NA|430aa|down_6|NC_019670.1_2895636_2896926_-	TIGR02608, hypothetical_protein, delta-60 repeat domain	NA|89aa|down_7|NC_019670.1_2897212_2897479_-	NA	NA|442aa|down_8|NC_019670.1_2897822_2899148_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|436aa|down_9|NC_019670.1_2899385_2900693_-	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation
GCF_000316175.1_ASM31617v1	NC_019670	Pseudomonas sp. UW4, complete sequence	3	3784292-3784383	3	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	Orphan	GCGATGGTCGTTAACGATAACGCG	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	NA,NA|116aa|down_3|NC_019670.1_3787660_3788008_+,NA|51aa|down_8|NC_019670.1_3792556_3792709_+	NA|824aa|up_9|NC_019670.1_3771015_3773487_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|223aa|up_8|NC_019670.1_3773488_3774157_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|658aa|up_7|NC_019670.1_3774294_3776268_+	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|99aa|up_6|NC_019670.1_3776388_3776685_-	pfam07045, DUF1330, Domain of unknown function (DUF1330)	NA|370aa|up_5|NC_019670.1_3776755_3777865_+	PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|342aa|up_4|NC_019670.1_3778169_3779195_+	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|315aa|up_3|NC_019670.1_3779191_3780136_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|270aa|up_2|NC_019670.1_3780142_3780952_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|385aa|up_1|NC_019670.1_3780968_3782123_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|572aa|up_0|NC_019670.1_3782511_3784227_+	PRK06565, PRK06565, amidase; Validated	NA|333aa|down_0|NC_019670.1_3784482_3785481_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|263aa|down_1|NC_019670.1_3785565_3786354_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|367aa|down_2|NC_019670.1_3786544_3787645_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|116aa|down_3|NC_019670.1_3787660_3788008_+	NA	NA|207aa|down_4|NC_019670.1_3788091_3788712_+	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|469aa|down_5|NC_019670.1_3788903_3790310_-	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	NA|162aa|down_6|NC_019670.1_3790634_3791120_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|348aa|down_7|NC_019670.1_3791338_3792382_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|51aa|down_8|NC_019670.1_3792556_3792709_+	NA	NA|226aa|down_9|NC_019670.1_3792799_3793477_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle
GCF_000316175.1_ASM31617v1	NC_019670	Pseudomonas sp. UW4, complete sequence	4	3831096-3831190	4	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	Orphan	TCGCGAGCAGGCTCGCTCCCACAG	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	NA|156aa|up_4|NC_019670.1_3822408_3822876_-,NA|108aa|up_0|NC_019670.1_3830357_3830681_-,NA|173aa|down_4|NC_019670.1_3834882_3835401_-,NA|183aa|down_5|NC_019670.1_3835400_3835949_-,NA|268aa|down_7|NC_019670.1_3836482_3837286_-	NA|125aa|up_9|NC_019670.1_3817532_3817907_+	pfam10861, DUF2784, Protein of Unknown function (DUF2784)	NA|515aa|up_8|NC_019670.1_3817981_3819526_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|176aa|up_7|NC_019670.1_3819607_3820135_-	pfam11286, DUF3087, Protein of unknown function (DUF3087)	NA|458aa|up_6|NC_019670.1_3820370_3821744_+	pfam11892, DUF3412, Domain of unknown function (DUF3412)	NA|149aa|up_5|NC_019670.1_3821833_3822280_+	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|156aa|up_4|NC_019670.1_3822408_3822876_-	NA	NA|337aa|up_3|NC_019670.1_3822965_3823976_-	sd00010, SLR, Sel1-like repeat	NA|635aa|up_2|NC_019670.1_3825511_3827416_-	PLN02270, PLN02270, phospholipase D alpha	NA|918aa|up_1|NC_019670.1_3827412_3830166_-	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein	NA|108aa|up_0|NC_019670.1_3830357_3830681_-	NA	NA|180aa|down_0|NC_019670.1_3831690_3832230_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|125aa|down_1|NC_019670.1_3832204_3832579_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|158aa|down_2|NC_019670.1_3832583_3833057_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|609aa|down_3|NC_019670.1_3833059_3834886_-	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|173aa|down_4|NC_019670.1_3834882_3835401_-	NA	NA|183aa|down_5|NC_019670.1_3835400_3835949_-	NA	NA|182aa|down_6|NC_019670.1_3835935_3836481_-	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|268aa|down_7|NC_019670.1_3836482_3837286_-	NA	NA|569aa|down_8|NC_019670.1_3837266_3838973_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|178aa|down_9|NC_019670.1_3839057_3839591_-	cd17572, REC_NtrC1-like, phosphoacceptor receiver (REC) domain of nitrogen regulatory protein C 1 (NtrC1) from Aquifex aeolicus and similar NtrC family response regulators
GCF_000316175.1_ASM31617v1	NC_019670	Pseudomonas sp. UW4, complete sequence	5	4816901-4817001	5	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	Orphan	GCCCGCCTCGCCGCCGATGGCGC	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,WYL,PrimPol,DinG,cas3	NA,NA|336aa|down_3|NC_019670.1_4820981_4821989_-,NA|322aa|down_8|NC_019670.1_4828814_4829780_+,NA|106aa|down_9|NC_019670.1_4829899_4830217_+	NA|407aa|up_9|NC_019670.1_4801188_4802409_-	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase	NA|1646aa|up_8|NC_019670.1_4802718_4807656_+	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|331aa|up_7|NC_019670.1_4807663_4808656_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|255aa|up_6|NC_019670.1_4808903_4809668_-	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	NA|371aa|up_5|NC_019670.1_4809695_4810808_-	cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO	NA|233aa|up_4|NC_019670.1_4810809_4811508_-	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]	NA|230aa|up_3|NC_019670.1_4811504_4812194_-	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism]	NA|259aa|up_2|NC_019670.1_4812285_4813062_-	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|652aa|up_1|NC_019670.1_4813760_4815716_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|88aa|up_0|NC_019670.1_4816302_4816566_+	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|416aa|down_0|NC_019670.1_4817558_4818806_+	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|193aa|down_1|NC_019670.1_4818891_4819470_+	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|425aa|down_2|NC_019670.1_4819511_4820786_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|336aa|down_3|NC_019670.1_4820981_4821989_-	NA	NA|789aa|down_4|NC_019670.1_4821991_4824358_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|178aa|down_5|NC_019670.1_4824930_4825464_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|238aa|down_6|NC_019670.1_4825579_4826293_+	pfam01844, HNH, HNH endonuclease	NA|139aa|down_7|NC_019670.1_4826387_4826804_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|322aa|down_8|NC_019670.1_4828814_4829780_+	NA	NA|106aa|down_9|NC_019670.1_4829899_4830217_+	NA
