assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000315955.1_ASM31595v1	NC_019560	Helicobacter pylori Aklavik117, complete sequence	1	65123-65269	1	CRISPRCasFinder	no		cas3,cas2,cas14j,c2c9_V-U4,DEDDh	Orphan	TTTTAGAGAGCAAGAGTTTGAAAAGAATTTAGAGGATTTGATGCC	45	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,cas14j,c2c9_V-U4,DEDDh	NA|69aa|up_5|NC_019560.1_57522_57729_+,NA|117aa|down_1|NC_019560.1_66290_66641_+	NA|344aa|up_9|NC_019560.1_49922_50954_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|261aa|up_8|NC_019560.1_50963_51746_-	pfam06300, Tsp45I, Tsp45I type II restriction enzyme	NA|500aa|up_7|NC_019560.1_52110_53610_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1186aa|up_6|NC_019560.1_53636_57194_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|69aa|up_5|NC_019560.1_57522_57729_+	NA	NA|276aa|up_4|NC_019560.1_58532_59360_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|318aa|up_3|NC_019560.1_59361_60315_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|104aa|up_2|NC_019560.1_60304_60616_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|818aa|up_1|NC_019560.1_60627_63081_+	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|87aa|up_0|NC_019560.1_63655_63916_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|142aa|down_0|NC_019560.1_65863_66289_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|117aa|down_1|NC_019560.1_66290_66641_+	NA	NA|262aa|down_2|NC_019560.1_69142_69928_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_3|NC_019560.1_69927_70527_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|240aa|down_4|NC_019560.1_70555_71275_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|down_5|NC_019560.1_71330_71843_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|down_6|NC_019560.1_71844_72432_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|570aa|down_7|NC_019560.1_72624_74334_-	PRK13985, ureB, urease subunit alpha	NA|239aa|down_8|NC_019560.1_74337_75054_-	PRK13986, PRK13986, urease subunit beta	NA|158aa|down_9|NC_019560.1_75410_75884_-	PRK00376, lspA, lipoprotein signal peptidase
GCF_000315955.1_ASM31595v1	NC_019560	Helicobacter pylori Aklavik117, complete sequence	2	126338-126570	1	CRT	no		cas3,cas2,cas14j,c2c9_V-U4,DEDDh	Orphan	TTATTTGTCTTTTGTTTTTCTTGTTCTGTTTT	32	0	0	NA	NA	NA	3	3	Orphan	cas3,cas2,cas14j,c2c9_V-U4,DEDDh	NA|99aa|up_4|NC_019560.1_118565_118862_+,NA|47aa|down_7|NC_019560.1_134947_135088_+,NA|290aa|down_8|NC_019560.1_135202_136072_+	NA|305aa|up_9|NC_019560.1_112496_113411_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|621aa|up_8|NC_019560.1_114397_116260_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|189aa|up_7|NC_019560.1_116290_116857_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NC_019560.1_116856_117687_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NC_019560.1_117906_118545_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NC_019560.1_118565_118862_+	NA	NA|628aa|up_3|NC_019560.1_118885_120769_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NC_019560.1_120832_122377_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NC_019560.1_122542_124753_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|312aa|up_0|NC_019560.1_124745_125681_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|813aa|down_0|NC_019560.1_127089_129528_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|613aa|down_1|NC_019560.1_129887_131726_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_2|NC_019560.1_131722_132334_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_3|NC_019560.1_132314_132509_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_4|NC_019560.1_132604_132955_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_5|NC_019560.1_133154_134015_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|144aa|down_6|NC_019560.1_134368_134800_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|47aa|down_7|NC_019560.1_134947_135088_+	NA	NA|290aa|down_8|NC_019560.1_135202_136072_+	NA	NA|456aa|down_9|NC_019560.1_137133_138501_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form
GCF_000315955.1_ASM31595v1	NC_019560	Helicobacter pylori Aklavik117, complete sequence	3	325569-325631	2	CRISPRCasFinder	no		cas3,cas2,cas14j,c2c9_V-U4,DEDDh	Orphan	TTTTCTTGGGTTTCTTCTTGTGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,cas14j,c2c9_V-U4,DEDDh	NA|135aa|up_9|NC_019560.1_316626_317031_+,NA|123aa|up_6|NC_019560.1_318939_319308_+,NA	NA|135aa|up_9|NC_019560.1_316626_317031_+	NA	NA|295aa|up_8|NC_019560.1_317114_317999_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|294aa|up_7|NC_019560.1_318011_318893_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|123aa|up_6|NC_019560.1_318939_319308_+	NA	NA|321aa|up_5|NC_019560.1_319307_320270_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|382aa|up_4|NC_019560.1_320275_321421_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|252aa|up_3|NC_019560.1_321889_322645_-	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|542aa|up_2|NC_019560.1_322707_324333_-	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|80aa|up_1|NC_019560.1_324335_324575_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|207aa|up_0|NC_019560.1_324645_325266_-	TIGR03263, Guanylate_kinase, guanylate kinase	NA|181aa|down_0|NC_019560.1_326731_327274_+	PRK13912, PRK13912, nuclease NucT; Provisional	NA|246aa|down_1|NC_019560.1_327280_328018_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|238aa|down_2|NC_019560.1_328147_328861_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|228aa|down_3|NC_019560.1_328878_329562_+	TIGR03584, PseF, pseudaminic acid cytidylyltransferase	NA|298aa|down_4|NC_019560.1_329531_330425_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_5|NC_019560.1_330421_330964_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|down_6|NC_019560.1_330896_331835_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|down_7|NC_019560.1_331831_332614_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|down_8|NC_019560.1_332861_333854_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|down_9|NC_019560.1_333872_334679_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
GCF_000315955.1_ASM31595v1	NC_019560	Helicobacter pylori Aklavik117, complete sequence	4	325725-325930	3	CRISPRCasFinder	no		cas3,cas2,cas14j,c2c9_V-U4,DEDDh	Orphan	TTTTCTTGGGTTTCTTCTTGTGG	23	2	3	325844-325865|325889-325907|325889-325907	NC_019560.1_1429423-1429402|NC_019560.1_697738-697720|NC_019560.1_1322384-1322366	NA	4	4	Orphan	cas3,cas2,cas14j,c2c9_V-U4,DEDDh	NA|135aa|up_9|NC_019560.1_316626_317031_+,NA|123aa|up_6|NC_019560.1_318939_319308_+,NA	NA|135aa|up_9|NC_019560.1_316626_317031_+	NA	NA|295aa|up_8|NC_019560.1_317114_317999_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|294aa|up_7|NC_019560.1_318011_318893_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|123aa|up_6|NC_019560.1_318939_319308_+	NA	NA|321aa|up_5|NC_019560.1_319307_320270_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|382aa|up_4|NC_019560.1_320275_321421_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|252aa|up_3|NC_019560.1_321889_322645_-	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|542aa|up_2|NC_019560.1_322707_324333_-	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|80aa|up_1|NC_019560.1_324335_324575_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|207aa|up_0|NC_019560.1_324645_325266_-	TIGR03263, Guanylate_kinase, guanylate kinase	NA|181aa|down_0|NC_019560.1_326731_327274_+	PRK13912, PRK13912, nuclease NucT; Provisional	NA|246aa|down_1|NC_019560.1_327280_328018_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|238aa|down_2|NC_019560.1_328147_328861_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|228aa|down_3|NC_019560.1_328878_329562_+	TIGR03584, PseF, pseudaminic acid cytidylyltransferase	NA|298aa|down_4|NC_019560.1_329531_330425_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_5|NC_019560.1_330421_330964_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|down_6|NC_019560.1_330896_331835_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|down_7|NC_019560.1_331831_332614_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|down_8|NC_019560.1_332861_333854_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|down_9|NC_019560.1_333872_334679_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
GCF_000315955.1_ASM31595v1	NC_019560	Helicobacter pylori Aklavik117, complete sequence	5	710263-710357	4	CRISPRCasFinder	no		cas3,cas2,cas14j,c2c9_V-U4,DEDDh	Orphan	TGCTTGGAGACAGACTACTTGGATAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,cas14j,c2c9_V-U4,DEDDh	NA|158aa|up_8|NC_019560.1_698889_699363_+,NA|279aa|up_6|NC_019560.1_700611_701448_+,NA|115aa|up_2|NC_019560.1_706497_706842_+,NA|126aa|down_7|NC_019560.1_716896_717274_+	NA|829aa|up_9|NC_019560.1_696403_698890_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|158aa|up_8|NC_019560.1_698889_699363_+	NA	NA|382aa|up_7|NC_019560.1_699359_700505_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|279aa|up_6|NC_019560.1_700611_701448_+	NA	NA|936aa|up_5|NC_019560.1_701538_704346_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|274aa|up_4|NC_019560.1_704538_705360_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|309aa|up_3|NC_019560.1_705551_706478_+	pfam01795, Methyltransf_5, MraW methylase family	NA|115aa|up_2|NC_019560.1_706497_706842_+	NA	NA|301aa|up_1|NC_019560.1_707080_707983_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|407aa|up_0|NC_019560.1_708377_709598_+	COG4940, ComGF, Competence protein ComGF [Intracellular trafficking and secretion]	NA|415aa|down_0|NC_019560.1_710690_711935_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|241aa|down_1|NC_019560.1_711937_712660_-	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]	NA|134aa|down_2|NC_019560.1_712672_713074_-	TIGR00150, Hypothetical_UPF0079_protein_yjeE	NA|586aa|down_3|NC_019560.1_713070_714828_-	PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated	NA|211aa|down_4|NC_019560.1_714896_715529_-	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498	NA|141aa|down_5|NC_019560.1_715786_716209_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|157aa|down_6|NC_019560.1_716237_716708_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|126aa|down_7|NC_019560.1_716896_717274_+	NA	NA|331aa|down_8|NC_019560.1_717283_718276_-	TIGR00520, L-asparaginase_2, L-asparaginase, type II	NA|443aa|down_9|NC_019560.1_718358_719687_+	TIGR00770, Anaerobic_C4-dicarboxylate_transporter_DcuA, anaerobic c4-dicarboxylate membrane transporter family protein
