The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	410424	422579	2250427	tRNA	uncultured_virus(30.0%)	14	NA	NA
WP_011675460.1|410424_410742_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	31.9	9.0e-06
WP_015082041.1|410847_411474_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_015082042.1|411635_412976_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015082043.1|413066_413456_+	single-stranded DNA-binding protein	NA	A0A218MNB4	uncultured_virus	48.6	1.3e-22
WP_011675464.1|413574_413859_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	43.0	2.3e-13
WP_011675465.1|413945_415574_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	2.2e-156
WP_011675466.1|415623_416436_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	1.5e-33
WP_031286625.1|416625_417981_-	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	32.9	3.7e-32
WP_015082044.1|418045_418747_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	7.1e-43
WP_015082045.1|418924_419560_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	66.0	1.6e-73
WP_011675470.1|419692_420553_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.8	3.1e-64
WP_015082046.1|420602_421385_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_011675472.1|421377_421704_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_041931741.1|421703_422579_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	66.3	5.4e-101
>prophage 2
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	518901	577505	2250427	transposase,protease	Bacillus_phage(25.0%)	42	NA	NA
WP_010890648.1|518901_519582_+|transposase	IS6-like element ISS1S family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.5	8.5e-110
WP_080600851.1|519612_520428_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.6	5.9e-17
WP_015082100.1|520424_521150_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011675546.1|522675_523053_+	DUF3021 family protein	NA	NA	NA	NA	NA
WP_015082101.1|523161_524307_+	cysteine desulfurase	NA	NA	NA	NA	NA
WP_015082102.1|524456_525335_+	C40 family peptidase	NA	NA	NA	NA	NA
WP_015082103.1|525391_527041_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041931867.1|527224_528157_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	71.1	4.0e-118
WP_015082105.1|528375_529461_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	34.1	2.1e-09
WP_015082106.1|529496_530129_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	45.3	1.7e-48
WP_015082107.1|530129_532211_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_015082108.1|532197_532839_-	Holliday junction resolvase RecU	NA	NA	NA	NA	NA
WP_014573088.1|532919_533444_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_011675556.1|533603_533990_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_011675557.1|534210_534492_+	UPF0223 family protein	NA	NA	NA	NA	NA
WP_015082109.1|534457_535237_+	inositol monophosphatase family protein	NA	NA	NA	NA	NA
WP_015082110.1|535331_536612_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_011675560.1|536611_536803_+	DNA-directed RNA polymerase subunit beta	NA	NA	NA	NA	NA
WP_144019843.1|536881_538253_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	42.9	8.6e-53
WP_095586744.1|538312_539460_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_011675561.1|539716_541000_+	trigger factor	NA	NA	NA	NA	NA
WP_015082113.1|547859_549773_+	DNA primase	NA	A0A1S5REW9	Helicobacter_phage	33.5	1.7e-43
WP_011675564.1|549849_551193_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.6	7.2e-36
WP_015082114.1|552200_553580_+	MFS transporter	NA	NA	NA	NA	NA
WP_015082115.1|554613_555879_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_011834562.1|556107_556452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082116.1|556497_558744_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.7	2.1e-125
WP_015082117.1|558869_559340_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011675571.1|560802_561438_-	peptide deformylase	NA	Q6VSW0	Vibrio_phage	36.4	3.8e-11
WP_015082118.1|561592_561997_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_011675573.1|562058_564137_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_127005273.1|564847_566220_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.4	9.2e-55
WP_011675575.1|567812_568268_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_015082121.1|568542_569295_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_015082122.1|569480_570443_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_011675578.1|570617_571376_-	HAD-IIB family hydrolase	NA	A0A2P1EM96	Moumouvirus	25.9	6.1e-08
WP_011675579.1|571468_572059_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_014573068.1|572075_572612_-	phosphopantothenoylcysteine decarboxylase	NA	Q9J5A8	Fowlpox_virus	34.9	6.8e-22
WP_011675580.1|572604_573300_-	phosphopantothenate--cysteine ligase	NA	Q9HH70	Methanothermobacter_phage	31.7	1.7e-17
WP_015082124.1|573409_573631_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_051013160.1|576176_576371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144019844.1|576391_577505_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.7	1.0e-48
>prophage 3
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	615810	688113	2250427	tRNA,transposase,protease,bacteriocin	Klosneuvirus(16.67%)	54	NA	NA
WP_011675766.1|615810_616695_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_015082144.1|616840_617509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675768.1|617673_618576_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	35.2	1.8e-35
WP_041931751.1|618824_619526_-	hypothetical protein	NA	A0A1P8BMN5	Lactococcus_phage	50.6	4.5e-13
WP_015082146.1|619948_620296_-	XRE family transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	74.6	2.0e-43
WP_015082147.1|621060_621984_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_011675772.1|621976_622678_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015082148.1|622850_625079_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.9	6.7e-79
WP_011834623.1|625202_625715_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	5.3e-32
WP_015082149.1|625930_626494_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_015082150.1|626629_628270_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_014573028.1|628330_628801_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_095586744.1|630236_631384_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_011834627.1|631631_632087_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082152.1|632076_634527_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	34.0	2.2e-123
WP_015082153.1|634661_635219_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|635406_636708_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
WP_014573010.1|636811_637483_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	4.2e-29
WP_015082154.1|637484_638558_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014573008.1|638569_639139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082155.1|639325_640849_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_015082156.1|641042_641960_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_015082157.1|642219_644583_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	31.8	3.6e-107
WP_011675632.1|644626_645286_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_021036849.1|645288_646506_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003129585.1|646502_646649_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_041931753.1|647026_648289_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_014573002.1|648393_651807_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_015082159.1|653271_655818_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_015082160.1|655837_657076_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_015082161.1|657115_657715_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.0	2.1e-51
WP_011675638.1|657909_658440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082162.1|658609_659008_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_011675640.1|659389_660553_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_015082164.1|665196_666087_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_050748320.1|666401_667250_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_015082166.1|667336_668686_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011675645.1|668902_669175_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011675646.1|669178_669448_-	(4Fe-4S)-binding protein	NA	NA	NA	NA	NA
WP_031286717.1|669904_670678_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_011675648.1|670711_671245_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011675649.1|671222_671783_+	ribonuclease M5	NA	NA	NA	NA	NA
WP_011675650.1|671912_672797_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_015082167.1|672904_673963_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_011675652.1|674094_674652_+	elongation factor P	NA	NA	NA	NA	NA
WP_011675653.1|674798_675200_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_021166183.1|675192_676170_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_015082168.1|678496_679639_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_015082169.1|679628_680768_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA	NA
WP_041931755.1|680851_682294_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_011675660.1|685010_686813_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA	NA
WP_011675661.1|686888_687146_+	helix-turn-helix transcriptional regulator	NA	S5MAC0	Brevibacillus_phage	42.4	1.6e-05
WP_011675662.1|687245_687395_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_015082171.1|687414_688113_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 4
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	858581	914519	2250427	transposase,integrase	Yellowstone_lake_mimivirus(12.5%)	50	896309:896325	921306:921322
WP_015082260.1|858581_859472_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_021212525.1|859537_859975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082262.1|861211_862036_-	SP_1767 family glycosyltransferase	NA	NA	NA	NA	NA
WP_015082263.1|862341_863760_+	dipeptidase PepV	NA	NA	NA	NA	NA
WP_011675803.1|863887_864247_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_011675804.1|864290_865394_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.1	6.3e-30
WP_011675805.1|865554_865983_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_015082264.1|866121_867429_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011675807.1|867557_868475_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.1	9.0e-22
WP_015082265.1|868471_869974_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_015082266.1|870235_872770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082267.1|872756_873284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041931766.1|873293_873671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082268.1|873686_874265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082269.1|874246_875137_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011835499.1|877557_878415_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.0	2.6e-39
WP_031286477.1|878585_879839_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	32.3	1.2e-45
WP_011675817.1|879841_880081_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_015082270.1|880307_881198_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675819.1|881256_882402_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	38.8	4.5e-47
WP_015082271.1|882626_883484_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_015082272.1|883484_883985_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014572851.1|884060_884867_+	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_011675823.1|884863_885310_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_015082273.1|885489_887157_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_015082274.1|887856_888423_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_011835491.1|888517_889039_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_011835489.1|890217_891171_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_015082275.1|891326_891707_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_015082276.1|891703_894001_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_015082277.1|894075_895065_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_011675833.1|895263_895548_+	hypothetical protein	NA	NA	NA	NA	NA
896309:896325	attL	ATGTTGTCATTGAATCA	NA	NA	NA	NA
WP_011835483.1|897323_897986_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.4e-21
WP_041931767.1|898345_899233_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082279.1|899491_900382_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011675837.1|900468_901143_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_011675838.1|901302_901647_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_011675840.1|902575_903037_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_021037017.1|903291_903801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082281.1|903793_905122_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_015082282.1|905352_905904_+	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
WP_015082283.1|905973_906219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041931768.1|906491_907217_+	nicotinamide mononucleotide transporter	NA	A0A2P0ZKW0	Lactobacillus_phage	28.7	1.1e-14
WP_011675846.1|907359_907515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014572836.1|907769_908195_+	universal stress protein	NA	NA	NA	NA	NA
WP_015082285.1|908362_908725_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_011675849.1|908786_909320_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082286.1|909991_910882_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_003131392.1|913076_913409_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_015082287.1|913544_914519_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	28.3	1.9e-30
921306:921322	attR	ATGTTGTCATTGAATCA	NA	NA	NA	NA
>prophage 5
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	939087	973794	2250427	transposase	Streptococcus_phage(28.57%)	32	NA	NA
WP_144019846.1|939087_939766_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	1.9e-109
WP_014572811.1|940567_941209_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_015082299.1|941366_941831_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082300.1|941889_943368_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_015082301.1|943367_944087_+	DUF4811 domain-containing protein	NA	NA	NA	NA	NA
WP_015082302.1|944400_945255_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_127084506.1|946263_947375_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.8	7.2e-50
WP_041931775.1|947402_950489_+	DUF4422 domain-containing protein	NA	NA	NA	NA	NA
WP_015082306.1|950589_951480_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082307.1|951718_952834_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_187287154.1|952844_952988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031286330.1|952926_953763_+	LCP family protein	NA	NA	NA	NA	NA
WP_011675881.1|953949_955185_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_015082308.1|955242_955512_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_011675883.1|955582_956287_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_011675884.1|957542_957989_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_015082309.1|958072_958399_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011675886.1|958559_960227_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_041931776.1|960335_960929_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	43.5	2.4e-15
WP_015082310.1|960954_961845_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082311.1|962080_962929_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_031286331.1|963213_964083_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011675890.1|964094_964847_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.2	1.8e-28
WP_011675891.1|964848_965076_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_014572788.1|965273_966200_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.1	2.0e-85
WP_011675893.1|966340_966589_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_041931884.1|966830_969284_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	44.2	1.3e-104
WP_041168338.1|969302_969890_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_015082314.1|969967_970984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015082315.1|970965_971856_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082316.1|972057_972999_-	UbiA family prenyltransferase	NA	NA	NA	NA	NA
WP_015081738.1|973113_973794_-|transposase	IS6-like element ISS1S family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	1.2e-108
>prophage 6
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	1012616	1036313	2250427	transposase	Staphylococcus_phage(20.0%)	21	NA	NA
WP_015082336.1|1012616_1013309_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	35.3	4.2e-32
WP_015082337.1|1013301_1014237_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011675984.1|1014346_1015324_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	65.7	6.0e-117
WP_011675985.1|1015707_1017876_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.7	3.3e-256
WP_015082339.1|1018012_1018435_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	36.4	1.7e-12
WP_011675987.1|1018436_1018655_-	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	5.8e-12
WP_011675988.1|1018828_1019470_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_015082340.1|1019748_1021683_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.9	4.1e-125
WP_015082341.1|1021789_1022326_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_015082342.1|1022318_1023152_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	38.7	1.5e-20
WP_041931779.1|1023749_1026224_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.9	1.0e-96
WP_010890648.1|1027041_1027722_+|transposase	IS6-like element ISS1S family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.5	8.5e-110
WP_015082345.1|1028462_1029551_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	37.8	8.4e-51
WP_011675996.1|1029550_1030198_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	44.7	5.5e-42
WP_015082346.1|1030209_1031406_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	50.3	7.4e-109
WP_014572751.1|1031432_1031897_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	55.3	1.4e-39
WP_144019847.1|1032078_1033189_+|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	2.1e-49
WP_015082347.1|1033222_1034125_-	YafY family transcriptional regulator	NA	NA	NA	NA	NA
WP_014572493.1|1034223_1034604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676002.1|1034892_1035345_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_015082348.1|1035407_1036313_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.8	3.5e-10
>prophage 7
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	1149742	1216619	2250427	tRNA,transposase,protease	Lactococcus_phage(25.0%)	58	NA	NA
WP_041931785.1|1149742_1150252_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_011835213.1|1150682_1151189_+	dihydrofolate reductase	NA	A0A1L7N103	Ralstonia_phage	29.8	2.2e-09
WP_041931787.1|1151185_1151356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676271.1|1151437_1152673_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.6	2.4e-134
WP_015082414.1|1152669_1153257_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_011676273.1|1153310_1153661_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_011676274.1|1153740_1154790_+	GTP cyclohydrolase I FolE	NA	A0A088F7Y4	Vibrio_phage	45.1	8.7e-37
WP_015082415.1|1154786_1155860_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_014572580.1|1155862_1156363_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_015082416.1|1156378_1157662_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_015082417.1|1158608_1159895_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_011676280.1|1159899_1160790_+	homoserine kinase	NA	NA	NA	NA	NA
WP_162299524.1|1160974_1161643_+	niacin ECF transporter S component NiaX	NA	NA	NA	NA	NA
WP_015082419.1|1161685_1162585_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_015082420.1|1163044_1164325_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	38.4	6.0e-32
WP_041931788.1|1164321_1165110_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_021212202.1|1165111_1165912_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_015082423.1|1165959_1167027_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015082424.1|1168235_1169429_-	MFS transporter	NA	NA	NA	NA	NA
WP_015082425.1|1169725_1170907_+	cellulase family glycosylhydrolase	NA	NA	NA	NA	NA
WP_015082426.1|1170939_1172601_+	family 43 glycosylhydrolase	NA	NA	NA	NA	NA
WP_015082427.1|1173542_1173887_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_127005294.1|1174151_1174874_+	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_015082429.1|1174963_1175809_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_021037225.1|1176065_1176380_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015082430.1|1177136_1177553_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_011676176.1|1177917_1178328_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082431.1|1178499_1179357_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	30.4	2.4e-29
WP_015082432.1|1179394_1180285_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_144019849.1|1180702_1181814_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	2.1e-49
WP_015082434.1|1182157_1182862_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_011676170.1|1183883_1185254_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	56.0	3.8e-141
WP_015082435.1|1185298_1186906_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015082436.1|1186907_1187528_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_015082437.1|1187593_1188766_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_015082438.1|1188793_1190050_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_015082439.1|1190204_1191869_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_015082440.1|1191975_1193121_-	MFS transporter	NA	NA	NA	NA	NA
WP_014572641.1|1193228_1193627_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015082441.1|1193943_1194834_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011676161.1|1195414_1195747_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015082442.1|1195951_1197955_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.6	3.2e-80
WP_011676158.1|1198273_1198753_+	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_015082443.1|1198828_1199191_+	DUF2177 family protein	NA	NA	NA	NA	NA
WP_015082445.1|1202347_1203418_+	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_015082446.1|1203417_1204374_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_015082447.1|1205153_1206461_+	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_015082448.1|1206461_1207070_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_041931790.1|1207081_1207852_+	aminoglycoside 3'-phosphotransferase	NA	A0A193CJY5	Infectious_laryngotracheitis_virus	26.1	5.6e-09
WP_015082449.1|1207896_1208505_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_015082450.1|1208504_1209245_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_015082451.1|1209213_1209993_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_011676145.1|1209989_1210628_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA	NA
WP_015082452.1|1210628_1211414_+	histidinol-phosphatase HisJ family protein	NA	NA	NA	NA	NA
WP_011835164.1|1211446_1212406_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_015082453.1|1212828_1214370_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	36.5	8.9e-06
WP_015082454.1|1214625_1215384_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	99.6	4.5e-136
WP_015082455.1|1215395_1216619_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	99.8	6.4e-233
>prophage 8
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	1241882	1316592	2250427	transposase	Bacillus_phage(28.57%)	60	NA	NA
WP_127005281.1|1241882_1242996_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.1	2.3e-48
WP_015082470.1|1244016_1244874_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_015082471.1|1244863_1247137_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_014572659.1|1247296_1247950_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_015082472.1|1248042_1250775_-	magnesium-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	23.3	1.9e-43
WP_015082473.1|1251249_1252536_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_011676184.1|1252525_1252765_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
WP_041931794.1|1252800_1254024_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	30.8	2.4e-22
WP_015082475.1|1254023_1255523_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	30.0	1.8e-40
WP_021212171.1|1255547_1255679_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_015082476.1|1255861_1256518_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_015082477.1|1256510_1257311_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_015082478.1|1257323_1258076_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
WP_015082479.1|1259415_1260306_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082481.1|1261613_1262450_-	DUF4811 domain-containing protein	NA	NA	NA	NA	NA
WP_011676192.1|1262446_1264006_-	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_127005274.1|1264144_1265254_+|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_015082482.1|1266064_1266430_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_011676195.1|1266499_1267015_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_015082483.1|1267268_1267694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676197.1|1267941_1268130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011676198.1|1268143_1268902_-	helix-turn-helix transcriptional regulator	NA	R9TNM0	Vibrio_phage	26.6	3.7e-05
WP_015082484.1|1269020_1270805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	2.5e-44
WP_015082485.1|1270788_1272606_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	27.4	1.1e-44
WP_015082486.1|1272743_1273994_-	trypsin-like peptidase domain-containing protein	NA	A0A2H4PQN5	Staphylococcus_phage	26.3	2.1e-05
WP_015082487.1|1274007_1274598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082488.1|1274651_1275239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835093.1|1275549_1276170_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_011676202.1|1276518_1277238_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011676203.1|1277224_1277791_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.4	9.5e-14
WP_015082490.1|1277783_1278512_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.5	4.5e-08
WP_015082491.1|1278542_1279259_-	site-specific tyrosine recombinase XerD	NA	NA	NA	NA	NA
WP_011676206.1|1279236_1279698_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_015082492.1|1279728_1280232_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_014572683.1|1280270_1280876_-	nucleoside-triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_015082493.1|1280876_1281692_-	glutamate racemase	NA	NA	NA	NA	NA
WP_003130191.1|1281867_1282107_-	YneF family protein	NA	NA	NA	NA	NA
WP_015082494.1|1282257_1283517_-	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_014572686.1|1283631_1285071_-	glutamate synthase subunit beta	NA	NA	NA	NA	NA
WP_015082495.1|1285070_1289540_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
WP_015082496.1|1289708_1290320_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_015082497.1|1290352_1291375_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
WP_011676215.1|1291534_1292290_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_015082498.1|1293775_1295287_-	glutamate:gamma-aminobutyrate antiporter	NA	NA	NA	NA	NA
WP_041931795.1|1295329_1296220_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082500.1|1296697_1297588_-|transposase	IS982-like element IS982B family transposase	transposase	NA	NA	NA	NA
WP_015082501.1|1297821_1298598_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	41.9	1.9e-25
WP_015082502.1|1298710_1299559_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_041931796.1|1299788_1300301_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_015082503.1|1300376_1301135_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	99.2	2.9e-135
WP_015082455.1|1301146_1302370_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	99.8	6.4e-233
WP_041931797.1|1302663_1303485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082504.1|1303830_1304592_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_015082505.1|1304584_1305970_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_015082506.1|1306038_1307766_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_015082507.1|1309941_1310565_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_015082508.1|1310580_1311714_-	endoglucanase	NA	NA	NA	NA	NA
WP_011676308.1|1311715_1312570_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_015082509.1|1313662_1314970_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_015082511.1|1315701_1316592_-|transposase	IS982-like element IS982B family transposase	transposase	NA	NA	NA	NA
>prophage 9
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	1456627	1470179	2250427	transposase	Synechococcus_phage(25.0%)	9	NA	NA
WP_015082600.1|1456627_1458184_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	46.2	3.6e-71
WP_041931905.1|1458360_1458903_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	30.6	6.1e-10
WP_015082602.1|1460099_1460630_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082603.1|1460681_1462271_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	5.0e-12
WP_015082604.1|1462461_1463010_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.5	9.5e-19
WP_187287152.1|1463038_1464058_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.5	2.4e-60
WP_015082606.1|1464244_1466848_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	32.7	1.4e-123
WP_015082607.1|1467035_1467794_-	hypothetical protein	NA	A0A1P8BMN5	Lactococcus_phage	47.6	2.0e-11
WP_015082455.1|1468955_1470179_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	99.8	6.4e-233
>prophage 10
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	1517645	1579653	2250427	tRNA,transposase,bacteriocin	Bacillus_phage(20.0%)	53	NA	NA
WP_015082638.1|1517645_1518683_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_015082639.1|1518754_1519357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011676623.1|1519405_1519576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834866.1|1519603_1520917_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_015082640.1|1521066_1522233_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_015082641.1|1522233_1523307_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_015082642.1|1523549_1524899_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_011676628.1|1525067_1525409_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_015082643.1|1525493_1526735_-	ammonium transporter	NA	NA	NA	NA	NA
WP_021211938.1|1526920_1528393_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	33.1	5.1e-27
WP_015082645.1|1528405_1529098_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	3.1e-35
WP_011676633.1|1529915_1530161_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_051013198.1|1530949_1531546_+	Ltp family lipoprotein	NA	NA	NA	NA	NA
WP_015082647.1|1531653_1532424_+	hypothetical protein	NA	Q38326	Lactococcus_phage	74.0	1.9e-65
WP_011676639.1|1532584_1533658_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.1	1.5e-60
WP_011676640.1|1533745_1534678_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.5	1.3e-23
WP_153927095.1|1534736_1534880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834850.1|1534926_1536219_-	uracil-xanthine permease	NA	Q9KX94	Enterobacteria_phage	36.2	3.6e-61
WP_011676642.1|1536318_1536840_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_015082648.1|1537131_1537830_-	M50 family metallopeptidase	NA	NA	NA	NA	NA
WP_011676644.1|1537934_1538234_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015082649.1|1538223_1539141_+	cation transporter	NA	NA	NA	NA	NA
WP_015082651.1|1540729_1541542_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.0	1.5e-41
WP_015082652.1|1541778_1542669_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082654.1|1544157_1544400_-	DUF1858 domain-containing protein	NA	NA	NA	NA	NA
WP_015082655.1|1544515_1544842_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_015082656.1|1544828_1545536_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_015082657.1|1545730_1546303_+	NADPH-dependent F420 reductase	NA	NA	NA	NA	NA
WP_015082658.1|1546372_1546915_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_015082659.1|1546939_1548496_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_015082660.1|1548740_1549631_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082662.1|1551653_1553366_-	ribonuclease J	NA	NA	NA	NA	NA
WP_015082663.1|1553715_1554387_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	44.3	2.8e-20
WP_011676659.1|1554425_1555319_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_011676660.1|1555647_1556103_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	38.9	1.0e-26
WP_015082664.1|1556112_1557189_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_015082665.1|1557284_1558148_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_015082666.1|1558496_1558748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082667.1|1558915_1560892_-	transketolase	NA	NA	NA	NA	NA
WP_015082668.1|1561058_1562459_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_011676666.1|1562511_1562811_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_015082669.1|1564927_1565569_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_015082670.1|1566518_1567937_-	glucuronate isomerase	NA	NA	NA	NA	NA
WP_015082671.1|1567949_1568831_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_011676673.1|1568890_1570417_-	MFS transporter	NA	NA	NA	NA	NA
WP_041931808.1|1570602_1571679_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_011676494.1|1573853_1574534_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015082673.1|1574598_1576029_-	MFS transporter	NA	NA	NA	NA	NA
WP_011834820.1|1576387_1576693_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011676497.1|1576697_1576922_-|bacteriocin	garvicin Q family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_014572291.1|1577136_1578027_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_014572290.1|1578008_1578209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041931809.1|1578972_1579653_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	4.6e-108
>prophage 11
NC_019435	Lactococcus lactis subsp. cremoris UC509.9, complete sequence	2250427	1948805	1997956	2250427	tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_015082865.1|1948805_1949696_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082866.1|1950948_1952088_-	nicotinamide-nucleotide adenylyltransferase	NA	A0A2K9VDE3	Lactobacillus_phage	55.4	1.5e-119
WP_015082867.1|1952074_1953052_-	D-2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_015082868.1|1953249_1954542_-	U32 family peptidase	NA	Q6DW11	Phage_TP	33.7	1.0e-39
WP_041931920.1|1954826_1955750_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_015082870.1|1955969_1956251_+	DUF3270 family protein	NA	NA	NA	NA	NA
WP_011677044.1|1956280_1957102_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011677066.1|1957220_1957847_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_015082871.1|1957879_1958899_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011677068.1|1958891_1959662_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.8	4.9e-29
WP_162299525.1|1961084_1962196_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	6.1e-49
WP_011677070.1|1962464_1962863_+	HIT family protein	NA	NA	NA	NA	NA
WP_011677071.1|1962877_1963099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014573252.1|1963110_1963455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677073.1|1963532_1964222_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_011677074.1|1964608_1965034_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_015082873.1|1965169_1965934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082874.1|1965933_1966812_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	26.4	1.9e-05
WP_011677077.1|1966878_1967088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011677078.1|1967121_1967643_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_015082876.1|1967817_1968675_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011677080.1|1968719_1969178_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011677081.1|1969262_1969820_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_004254608.1|1969975_1970692_-	UMP kinase	NA	NA	NA	NA	NA
WP_011677082.1|1970776_1971229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082877.1|1971358_1972546_-	acetate kinase	NA	NA	NA	NA	NA
WP_011677084.1|1972704_1973892_-	acetate kinase	NA	NA	NA	NA	NA
WP_015082878.1|1974083_1975022_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011677086.1|1975109_1975361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031286284.1|1975461_1977294_-	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	35.4	9.2e-18
WP_127005290.1|1978066_1979178_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	6.1e-49
WP_015082881.1|1979671_1980562_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_015082882.1|1980622_1981081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082883.1|1981095_1981710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015082884.1|1982049_1982778_-	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011677095.1|1982970_1983192_+	YqgQ family protein	NA	NA	NA	NA	NA
WP_011677096.1|1983225_1984197_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_011677097.1|1984199_1984586_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_015082885.1|1984701_1985148_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	32.6	1.6e-16
WP_015082886.1|1985313_1985901_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_015082887.1|1985940_1986795_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011677101.1|1986936_1988031_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011677102.1|1988106_1988598_-|tRNA	prolyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_015082889.1|1988673_1990167_-	amino acid permease	NA	NA	NA	NA	NA
WP_015082890.1|1991750_1992695_-	carbamate kinase	NA	NA	NA	NA	NA
WP_015082891.1|1992712_1994293_-	amino acid permease	NA	NA	NA	NA	NA
WP_015082892.1|1994424_1995489_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_015082893.1|1995654_1996887_-	arginine deiminase	NA	NA	NA	NA	NA
WP_015082887.1|1997101_1997956_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NC_019431	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence	53051	3148	11336	53051	transposase	Streptococcus_phage(28.57%)	7	NA	NA
WP_014573540.1|3148_3907_+	AAA family ATPase	NA	H7BUL8	unidentified_phage	28.4	1.6e-16
WP_014573539.1|3910_4639_+	ParB N-terminal domain-containing protein	NA	Q4ZC37	Staphylococcus_virus	27.7	7.2e-06
WP_167349368.1|4850_5018_-	hypothetical protein	NA	A0A182BQ76	Lactococcus_phage	75.6	8.3e-11
WP_015081770.1|5007_6474_-	Y-family DNA polymerase	NA	Q6DMX4	Streptococcus_phage	51.3	1.3e-123
WP_015081771.1|7843_8524_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	3.2e-109
WP_015081772.1|8824_9406_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.4	1.4e-36
WP_011669047.1|9410_11336_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.6	5.7e-34
>prophage 2
NC_019431	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence	53051	15104	23519	53051	transposase	Lactococcus_phage(42.86%)	8	NA	NA
WP_015081775.1|15104_15941_-	AraC family transcriptional regulator	NA	D0R0F8	Streptococcus_phage	50.5	1.9e-74
WP_015081777.1|17509_18268_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	99.6	2.6e-136
WP_003331415.1|18279_19503_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_010890679.1|19728_19995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015081778.1|20008_20806_-	AAA family ATPase	NA	A0A1V0DZZ0	Clostridioides_phage	32.6	1.1e-20
WP_015081779.1|20949_21507_-	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	43.1	2.9e-31
WP_168784125.1|21919_22063_-	hypothetical protein	NA	A0A182BQ76	Lactococcus_phage	73.2	1.6e-10
WP_015081780.1|22052_23519_-	Y-family DNA polymerase	NA	Q6DMX4	Streptococcus_phage	51.3	6.5e-123
>prophage 1
NC_019430	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence	80592	4321	63753	80592	transposase,integrase,protease,bacteriocin	Streptococcus_phage(38.89%)	50	NA	NA
WP_015081731.1|4321_5002_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.7	4.2e-109
WP_015081732.1|5461_7039_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_003139952.1|7047_7485_+	universal stress protein	NA	NA	NA	NA	NA
WP_015081734.1|8772_9603_-	AAC(3) family N-acetyltransferase	NA	O64018	Bacillus_phage	39.8	6.2e-46
WP_014567970.1|10863_11838_-	TDT family transporter	NA	NA	NA	NA	NA
WP_134794160.1|13298_13478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098384394.1|13535_13715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003131736.1|14757_15657_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_015081735.1|15948_17355_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.4	3.3e-47
WP_011669099.1|17459_19166_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_041931928.1|19169_19487_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003131732.1|19514_20495_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002290553.1|20497_21430_-	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
WP_011669102.1|21440_21956_-	galactose-6-phosphate isomerase subunit LacB	NA	A0A222YX14	Synechococcus_phage	36.0	2.5e-05
WP_003131727.1|21972_22398_-	galactose-6-phosphate isomerase subunit LacA	NA	A0A222YX14	Synechococcus_phage	25.7	7.1e-06
WP_041931929.1|22875_23643_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_117518185.1|23913_24015_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_011669105.1|24141_24723_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	45.7	2.9e-34
WP_014567973.1|25456_27262_-	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_015081738.1|27906_28587_+|transposase	IS6-like element ISS1S family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	1.2e-108
WP_127005301.1|28752_29205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003129672.1|29865_30675_-	ParA family protein	NA	A0A1V0DZZ0	Clostridioides_phage	27.1	6.3e-19
WP_015081740.1|32286_33141_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011669112.1|33418_34435_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppD	NA	G3M9Y6	Bacillus_virus	30.9	3.4e-14
WP_015081741.1|34431_35391_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	NA	F2Y302	Organic_Lake_phycodnavirus	24.7	7.7e-08
WP_010906163.1|35371_36331_+	murein tripeptide/oligopeptide ABC transporter permease OppB	NA	NA	NA	NA	NA
WP_011669111.1|36340_37225_+	murein tripeptide/oligopeptide ABC transporter permease OppC	NA	NA	NA	NA	NA
WP_015081742.1|37334_39137_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011669109.1|39261_41145_+	endopeptidase PepO	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.1	1.3e-72
WP_003132842.1|41391_41688_+	BRCT domain-containing protein	NA	A0A1S5SEW3	Streptococcus_phage	39.3	4.2e-05
WP_003132844.1|41722_41944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015081744.1|43334_44000_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_013646119.1|44166_44847_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.8e-127
WP_023349284.1|44923_45760_-	AraC family transcriptional regulator	NA	D0R0F8	Streptococcus_phage	50.5	4.1e-74
WP_011915238.1|46047_46383_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011834695.1|46651_47971_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_179917535.1|48236_48374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144019851.1|48690_49353_-	abortive infection protein	NA	NA	NA	NA	NA
WP_011669037.1|50258_50948_+	serine/threonine protein phosphatase	NA	A0A0C5JZB3	Enterococcus_phage	35.8	3.9e-30
WP_015081747.1|51090_51735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132863.1|51731_52259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015081748.1|52272_53430_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_015081749.1|54522_57582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015081750.1|57599_58070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015081751.1|58233_58824_+	CHAP domain-containing protein	NA	A0A1P8CMP9	Staphylococcus_phage	31.5	4.9e-05
WP_161908458.1|59036_60005_-	Abi family protein	NA	NA	NA	NA	NA
WP_015081753.1|60442_61117_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.1	2.4e-112
WP_015081754.1|61361_61664_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_021721729.1|62389_62773_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A1X9I6C6	Streptococcus_phage	56.1	2.7e-52
WP_015081755.1|63054_63753_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
