assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000309565.2_ASM30956v2	NZ_CP006690	Lactobacillus casei 12A chromosome, complete genome	1	267086-267230	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT	Orphan	GGGGTCCTTATGAGCAGGTTTCTGCGCCTGTTTGCGCGTTTCGAAA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT	NA|115aa|up_7|NZ_CP006690.1_258311_258656_+,NA|111aa|down_4|NZ_CP006690.1_270957_271290_+	NA|523aa|up_9|NZ_CP006690.1_254959_256528_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|451aa|up_8|NZ_CP006690.1_256712_258065_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|115aa|up_7|NZ_CP006690.1_258311_258656_+	NA	NA|240aa|up_6|NZ_CP006690.1_258729_259449_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|266aa|up_5|NZ_CP006690.1_259445_260243_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|284aa|up_4|NZ_CP006690.1_260310_261162_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|294aa|up_3|NZ_CP006690.1_261158_262040_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|600aa|up_2|NZ_CP006690.1_262036_263836_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|365aa|up_1|NZ_CP006690.1_263964_265059_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|460aa|up_0|NZ_CP006690.1_265209_266589_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|229aa|down_0|NZ_CP006690.1_267330_268017_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|253aa|down_1|NZ_CP006690.1_268461_269220_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|261aa|down_2|NZ_CP006690.1_269304_270087_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|248aa|down_3|NZ_CP006690.1_270105_270849_+	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|111aa|down_4|NZ_CP006690.1_270957_271290_+	NA	NA|200aa|down_5|NZ_CP006690.1_271580_272180_-	TIGR02227, Inactive_signal_peptidase_IA	NA|313aa|down_6|NZ_CP006690.1_272257_273196_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|516aa|down_7|NZ_CP006690.1_273575_275123_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|down_8|NZ_CP006690.1_275282_276023_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|105aa|down_9|NZ_CP006690.1_281597_281912_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_000309565.2_ASM30956v2	NZ_CP006690	Lactobacillus casei 12A chromosome, complete genome	2	641900-642015	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT	Orphan	CTTTGGTCGTTTAGGTTCGAGGTCCTTATGC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT	NA|48aa|up_0|NZ_CP006690.1_641640_641784_+,NA|78aa|down_1|NZ_CP006690.1_642917_643151_-,NA|60aa|down_5|NZ_CP006690.1_646260_646440_+,NA|175aa|down_6|NZ_CP006690.1_646517_647042_+,NA|354aa|down_9|NZ_CP006690.1_648973_650035_-	NA|227aa|up_9|NZ_CP006690.1_631596_632277_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP006690.1_632298_633237_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP006690.1_633351_634353_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP006690.1_634391_634910_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP006690.1_634954_635383_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP006690.1_635387_636164_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP006690.1_636608_637235_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP006690.1_637295_638417_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP006690.1_638416_641542_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP006690.1_641640_641784_+	NA	NA|159aa|down_0|NZ_CP006690.1_642447_642924_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_CP006690.1_642917_643151_-	NA	NA|368aa|down_2|NZ_CP006690.1_643493_644597_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP006690.1_644807_645593_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_CP006690.1_645595_646264_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_CP006690.1_646260_646440_+	NA	NA|175aa|down_6|NZ_CP006690.1_646517_647042_+	NA	NA|211aa|down_7|NZ_CP006690.1_647274_647907_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_CP006690.1_647978_648800_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_CP006690.1_648973_650035_-	NA
GCF_000309565.2_ASM30956v2	NZ_CP006690	Lactobacillus casei 12A chromosome, complete genome	3	1797215-1797335	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT	Orphan	CGGTTTCTAAACGCGTTCGCCACCCCAGAAACC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT	NA|100aa|up_5|NZ_CP006690.1_1792338_1792638_+,NA|146aa|down_5|NZ_CP006690.1_1801893_1802331_-	NA|585aa|up_9|NZ_CP006690.1_1786292_1788047_-	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|389aa|up_8|NZ_CP006690.1_1788370_1789537_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|427aa|up_7|NZ_CP006690.1_1789520_1790801_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|394aa|up_6|NZ_CP006690.1_1790812_1791994_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|100aa|up_5|NZ_CP006690.1_1792338_1792638_+	NA	NA|277aa|up_4|NZ_CP006690.1_1792638_1793469_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|188aa|up_3|NZ_CP006690.1_1793616_1794180_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|273aa|up_2|NZ_CP006690.1_1794292_1795111_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|380aa|up_1|NZ_CP006690.1_1795170_1796310_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|202aa|up_0|NZ_CP006690.1_1796388_1796994_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|down_0|NZ_CP006690.1_1797720_1798185_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|down_1|NZ_CP006690.1_1798177_1798630_-	PRK04351, PRK04351, SprT family protein	NA|251aa|down_2|NZ_CP006690.1_1798771_1799524_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|down_3|NZ_CP006690.1_1799516_1800416_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|down_4|NZ_CP006690.1_1800412_1801408_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|down_5|NZ_CP006690.1_1801893_1802331_-	NA	NA|887aa|down_6|NZ_CP006690.1_1802467_1805128_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|down_7|NZ_CP006690.1_1805435_1806593_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_8|NZ_CP006690.1_1806812_1807640_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|down_9|NZ_CP006690.1_1807642_1808836_-	pfam00144, Beta-lactamase, Beta-lactamase
