assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000306905.1_ASM30690v1	NC_018586	Listeria monocytogenes SLCC2540, complete genome	1	500627-501211	1	CRT	no	RT	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA|158aa|down_0|NC_018586.1_502104_502578_+,NA|162aa|down_1|NC_018586.1_502597_503083_+,NA|89aa|down_3|NC_018586.1_503491_503758_+	NA|252aa|up_9|NC_018586.1_484311_485067_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NC_018586.1_485183_487343_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NC_018586.1_487339_488488_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NC_018586.1_488492_489440_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NC_018586.1_489595_491191_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NC_018586.1_491324_492608_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NC_018586.1_492608_493709_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NC_018586.1_493701_495252_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NC_018586.1_495885_497424_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|716aa|up_0|NC_018586.1_497686_499834_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NC_018586.1_502104_502578_+	NA	NA|162aa|down_1|NC_018586.1_502597_503083_+	NA	NA|102aa|down_2|NC_018586.1_503110_503416_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NC_018586.1_503491_503758_+	NA	NA|321aa|down_4|NC_018586.1_503837_504800_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|863aa|down_5|NC_018586.1_504974_507563_+	pfam07693, KAP_NTPase, KAP family P-loop domain	NA|187aa|down_6|NC_018586.1_507729_508290_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_7|NC_018586.1_508399_510100_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_8|NC_018586.1_510250_511354_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|160aa|down_9|NC_018586.1_511443_511923_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000306905.1_ASM30690v1	NC_018586	Listeria monocytogenes SLCC2540, complete genome	2	2146021-2146308	1	PILER-CR	no		csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	ACATATTAGTAACGGAACTCGTATCAAAATTACTTACATCCAATTTCTCAAGTG	54	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	NA|89aa|up_5|NC_018586.1_2136930_2137197_-,NA|162aa|up_3|NC_018586.1_2137603_2138089_-,NA|158aa|up_2|NC_018586.1_2138108_2138582_-,NA|92aa|down_4|NC_018586.1_2152452_2152728_-,NA|89aa|down_5|NC_018586.1_2152871_2153138_-	NA|369aa|up_9|NC_018586.1_2131975_2133082_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|485aa|up_8|NC_018586.1_2133213_2134668_+	PRK08071, PRK08071, L-aspartate oxidase; Provisional	NA|282aa|up_7|NC_018586.1_2134664_2135510_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|367aa|up_6|NC_018586.1_2135506_2136607_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|89aa|up_5|NC_018586.1_2136930_2137197_-	NA	NA|102aa|up_4|NC_018586.1_2137270_2137576_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_3|NC_018586.1_2137603_2138089_-	NA	NA|158aa|up_2|NC_018586.1_2138108_2138582_-	NA	NA|665aa|up_1|NC_018586.1_2138647_2140642_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|613aa|up_0|NC_018586.1_2140777_2142616_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|down_0|NC_018586.1_2147375_2148914_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|260aa|down_1|NC_018586.1_2148935_2149715_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|198aa|down_2|NC_018586.1_2149742_2150336_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|585aa|down_3|NC_018586.1_2150634_2152389_-	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|92aa|down_4|NC_018586.1_2152452_2152728_-	NA	NA|89aa|down_5|NC_018586.1_2152871_2153138_-	NA	NA|1273aa|down_6|NC_018586.1_2153429_2157248_-	NF033189, internalin_A, class 1 internalin InlA	NA|452aa|down_7|NC_018586.1_2157633_2158989_-	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|594aa|down_8|NC_018586.1_2159135_2160917_-	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|89aa|down_9|NC_018586.1_2161872_2162139_-	pfam13518, HTH_28, Helix-turn-helix domain
GCF_000306905.1_ASM30690v1	NC_018586	Listeria monocytogenes SLCC2540, complete genome	3	2160373-2160467	1	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	CTTATGTCACTTATCTGATTCTGATTAAT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	NA|92aa|up_3|NC_018586.1_2152452_2152728_-,NA|89aa|up_2|NC_018586.1_2152871_2153138_-,NA|54aa|down_2|NC_018586.1_2164678_2164840_+	NA|613aa|up_9|NC_018586.1_2140777_2142616_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|718aa|up_8|NC_018586.1_2144959_2147113_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|up_7|NC_018586.1_2147375_2148914_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|260aa|up_6|NC_018586.1_2148935_2149715_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|198aa|up_5|NC_018586.1_2149742_2150336_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|585aa|up_4|NC_018586.1_2150634_2152389_-	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|92aa|up_3|NC_018586.1_2152452_2152728_-	NA	NA|89aa|up_2|NC_018586.1_2152871_2153138_-	NA	NA|1273aa|up_1|NC_018586.1_2153429_2157248_-	NF033189, internalin_A, class 1 internalin InlA	NA|452aa|up_0|NC_018586.1_2157633_2158989_-	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|89aa|down_0|NC_018586.1_2161872_2162139_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|573aa|down_1|NC_018586.1_2162297_2164016_-	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|54aa|down_2|NC_018586.1_2164678_2164840_+	NA	NA|259aa|down_3|NC_018586.1_2165265_2166042_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|97aa|down_4|NC_018586.1_2166166_2166457_-	pfam02325, YGGT, YGGT family	NA|153aa|down_5|NC_018586.1_2166479_2166938_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_6|NC_018586.1_2166941_2167631_-	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|392aa|down_7|NC_018586.1_2167749_2168925_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|427aa|down_8|NC_018586.1_2168991_2170272_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|271aa|down_9|NC_018586.1_2170636_2171449_-	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]
GCF_000306905.1_ASM30690v1	NC_018586	Listeria monocytogenes SLCC2540, complete genome	4	2163269-2163700	2	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	CCGATATTGGAGTAAGATCACTTACCTGGTTATTAT	36	0	0	NA	NA	NA	6	6	Orphan	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	NA|92aa|up_5|NC_018586.1_2152452_2152728_-,NA|89aa|up_4|NC_018586.1_2152871_2153138_-,NA|54aa|down_0|NC_018586.1_2164678_2164840_+	NA|513aa|up_9|NC_018586.1_2147375_2148914_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|260aa|up_8|NC_018586.1_2148935_2149715_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|198aa|up_7|NC_018586.1_2149742_2150336_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|585aa|up_6|NC_018586.1_2150634_2152389_-	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|92aa|up_5|NC_018586.1_2152452_2152728_-	NA	NA|89aa|up_4|NC_018586.1_2152871_2153138_-	NA	NA|1273aa|up_3|NC_018586.1_2153429_2157248_-	NF033189, internalin_A, class 1 internalin InlA	NA|452aa|up_2|NC_018586.1_2157633_2158989_-	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|594aa|up_1|NC_018586.1_2159135_2160917_-	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|89aa|up_0|NC_018586.1_2161872_2162139_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|54aa|down_0|NC_018586.1_2164678_2164840_+	NA	NA|259aa|down_1|NC_018586.1_2165265_2166042_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|97aa|down_2|NC_018586.1_2166166_2166457_-	pfam02325, YGGT, YGGT family	NA|153aa|down_3|NC_018586.1_2166479_2166938_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_4|NC_018586.1_2166941_2167631_-	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|392aa|down_5|NC_018586.1_2167749_2168925_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|427aa|down_6|NC_018586.1_2168991_2170272_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|271aa|down_7|NC_018586.1_2170636_2171449_-	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|364aa|down_8|NC_018586.1_2171471_2172563_-	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	NA|456aa|down_9|NC_018586.1_2172559_2173927_-	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
GCF_000306905.1_ASM30690v1	NC_018586	Listeria monocytogenes SLCC2540, complete genome	5	2697137-2698758	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	Type II-B,Type II-C,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	24,24,18	24	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,cas3,WYL,RT,casR,DEDDh,csn2,cas2,cas1,cas9	NA|121aa|up_0|NC_018586.1_2696249_2696612_-,NA|160aa|down_4|NC_018586.1_2705257_2705737_-	NA|159aa|up_9|NC_018586.1_2678856_2679333_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NC_018586.1_2679332_2682320_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NC_018586.1_2682817_2683660_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NC_018586.1_2683709_2685191_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NC_018586.1_2685291_2686179_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NC_018586.1_2691969_2692998_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NC_018586.1_2693266_2694793_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NC_018586.1_2694832_2695684_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NC_018586.1_2695705_2696128_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NC_018586.1_2696249_2696612_-	NA	csn2|221aa|down_0|NC_018586.1_2698886_2699549_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_018586.1_2699538_2699880_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NC_018586.1_2699876_2700743_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NC_018586.1_2700743_2704748_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NC_018586.1_2705257_2705737_-	NA	NA|131aa|down_5|NC_018586.1_2705960_2706353_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NC_018586.1_2706374_2706812_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NC_018586.1_2707006_2707753_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NC_018586.1_2707758_2708556_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NC_018586.1_2708558_2709425_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
