assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000306745.1_ASM30674v1	NC_018877	Bacillus thuringiensis Bt407, complete sequence	1	1117213-1117328	1	CRISPRCasFinder	no		cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh	Orphan	GGTTTAAATACGTTAAATAGCAAAACAGGTGA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh,c2c4_V-U1,cas5,cas7,cas8a2,cas6	NA|100aa|up_4|NC_018877.1_1111611_1111911_+,NA|285aa|up_3|NC_018877.1_1111996_1112851_-,NA|71aa|down_0|NC_018877.1_1119229_1119442_+,NA|143aa|down_8|NC_018877.1_1124226_1124655_+	NA|349aa|up_9|NC_018877.1_1104030_1105077_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|312aa|up_8|NC_018877.1_1105091_1106027_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|474aa|up_7|NC_018877.1_1106046_1107468_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|451aa|up_6|NC_018877.1_1107519_1108872_-	pfam13218, DUF4026, Protein of unknown function (DUF4026)	NA|789aa|up_5|NC_018877.1_1109113_1111480_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|100aa|up_4|NC_018877.1_1111611_1111911_+	NA	NA|285aa|up_3|NC_018877.1_1111996_1112851_-	NA	NA|134aa|up_2|NC_018877.1_1113080_1113482_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|646aa|up_1|NC_018877.1_1113484_1115422_+	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|191aa|up_0|NC_018877.1_1115693_1116266_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|71aa|down_0|NC_018877.1_1119229_1119442_+	NA	NA|102aa|down_1|NC_018877.1_1119445_1119751_+	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown]	NA|118aa|down_2|NC_018877.1_1119777_1120131_-	pfam14470, bPH_3, Bacterial PH domain	NA|170aa|down_3|NC_018877.1_1120264_1120774_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|338aa|down_4|NC_018877.1_1120968_1121982_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|43aa|down_5|NC_018877.1_1122021_1122150_-	pfam14149, YhfH, YhfH-like protein	NA|245aa|down_6|NC_018877.1_1122353_1123088_+	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|330aa|down_7|NC_018877.1_1123097_1124087_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|143aa|down_8|NC_018877.1_1124226_1124655_+	NA	NA|511aa|down_9|NC_018877.1_1124816_1126349_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated
GCF_000306745.1_ASM30674v1	NC_018877	Bacillus thuringiensis Bt407, complete sequence	2	3435307-3435417	2	CRISPRCasFinder	no	csa3	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh	Type I-A	TACCGGAATTGGAATAACTGGTCCTAC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh,c2c4_V-U1,cas5,cas7,cas8a2,cas6	NA,NA	NA|346aa|up_9|NC_018877.1_3425423_3426461_-	pfam13170, DUF4003, Protein of unknown function (DUF4003)	NA|152aa|up_8|NC_018877.1_3426653_3427109_-	pfam12867, DinB_2, DinB superfamily	NA|163aa|up_7|NC_018877.1_3427301_3427790_+	pfam05163, DinB, DinB family	NA|159aa|up_6|NC_018877.1_3427903_3428380_-	pfam10901, DUF2690, Protein of unknown function (DUF2690)	NA|171aa|up_5|NC_018877.1_3428397_3428910_-	pfam10901, DUF2690, Protein of unknown function (DUF2690)	NA|298aa|up_4|NC_018877.1_3429210_3430104_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|322aa|up_3|NC_018877.1_3430227_3431193_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|237aa|up_2|NC_018877.1_3431258_3431969_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|175aa|up_1|NC_018877.1_3432129_3432654_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|634aa|up_0|NC_018877.1_3432660_3434562_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|514aa|down_0|NC_018877.1_3435996_3437538_-	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|264aa|down_1|NC_018877.1_3437741_3438533_+	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|596aa|down_2|NC_018877.1_3438650_3440438_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|349aa|down_3|NC_018877.1_3440485_3441532_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|274aa|down_4|NC_018877.1_3441719_3442541_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|326aa|down_5|NC_018877.1_3442583_3443561_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|311aa|down_6|NC_018877.1_3443792_3444725_-	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|139aa|down_7|NC_018877.1_3444905_3445322_-	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|386aa|down_8|NC_018877.1_3445490_3446648_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|376aa|down_9|NC_018877.1_3446977_3448105_-	pfam00144, Beta-lactamase, Beta-lactamase
GCF_000306745.1_ASM30674v1	NC_018877	Bacillus thuringiensis Bt407, complete sequence	3	3683558-3683872	1	CRT	no		cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh	Orphan	NGCTACTGGCGCTACCGG	18	7	23	3683576-3683602|3683576-3683602|3683576-3683602|3683576-3683602|3683621-3683638|3683621-3683638|3683621-3683638|3683621-3683638|3683621-3683638|3683657-3683683|3683657-3683683|3683657-3683683|3683657-3683683|3683702-3683719|3683702-3683719|3683702-3683719|3683702-3683719|3683702-3683719|3683738-3683755|3683738-3683755|3683738-3683755|3683774-3683800|3683819-3683854	NC_018877.1_3683423-3683449|NC_018877.1_3683531-3683557|NC_018877.1_3683378-3683404|NC_018877.1_3683459-3683485|NC_018877.1_3683504-3683521|NC_018877.1_3683540-3683557|NC_018877.1_3683387-3683404|NC_018877.1_3683432-3683449|NC_018877.1_3683468-3683485|NC_018877.1_3683423-3683449|NC_018877.1_3683531-3683557|NC_018877.1_3683378-3683404|NC_018877.1_3683459-3683485|NC_018877.1_3683504-3683521|NC_018877.1_3683540-3683557|NC_018877.1_3683387-3683404|NC_018877.1_3683432-3683449|NC_018877.1_3683468-3683485|NC_018877.1_3683423-3683440|NC_018877.1_3683531-3683548|NC_018877.1_3683864-3683881|NC_018877.1_3683495-3683521|NC_018877.1_3683864-3683899	NA	7	7	Orphan	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh,c2c4_V-U1,cas5,cas7,cas8a2,cas6	NA,NA|82aa|down_3|NC_018877.1_3687912_3688158_+	NA|268aa|up_9|NC_018877.1_3672817_3673621_-	pfam13349, DUF4097, Putative adhesin	NA|181aa|up_8|NC_018877.1_3673621_3674164_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|108aa|up_7|NC_018877.1_3674156_3674480_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|445aa|up_6|NC_018877.1_3675098_3676433_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_5|NC_018877.1_3676481_3676871_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_4|NC_018877.1_3677045_3678317_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_3|NC_018877.1_3678309_3679584_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_2|NC_018877.1_3679676_3680300_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|319aa|up_1|NC_018877.1_3680568_3681525_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NC_018877.1_3681789_3682755_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|452aa|down_0|NC_018877.1_3685084_3686439_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|75aa|down_1|NC_018877.1_3686531_3686756_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_2|NC_018877.1_3686777_3687731_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_3|NC_018877.1_3687912_3688158_+	NA	NA|311aa|down_4|NC_018877.1_3688220_3689153_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_5|NC_018877.1_3689502_3691359_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_6|NC_018877.1_3691372_3692284_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|251aa|down_7|NC_018877.1_3692280_3693033_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_8|NC_018877.1_3693192_3694356_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_9|NC_018877.1_3694473_3695016_-	COG2322, COG2322, Predicted membrane protein [Function unknown]
GCF_000306745.1_ASM30674v1	NC_018877	Bacillus thuringiensis Bt407, complete sequence	4	3683954-3684502	2	CRT	no		cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh	Orphan	NGCTACTGGACCTCAAGG	18	2	3	3683972-3683989|3683972-3683989|3684287-3684304	NC_018877.1_3683504-3683521|NC_018877.1_3683540-3683557|NC_018877.1_3683882-3683899	NA	12	12	Orphan	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh,c2c4_V-U1,cas5,cas7,cas8a2,cas6	NA,NA|82aa|down_3|NC_018877.1_3687912_3688158_+	NA|268aa|up_9|NC_018877.1_3672817_3673621_-	pfam13349, DUF4097, Putative adhesin	NA|181aa|up_8|NC_018877.1_3673621_3674164_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|108aa|up_7|NC_018877.1_3674156_3674480_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|445aa|up_6|NC_018877.1_3675098_3676433_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_5|NC_018877.1_3676481_3676871_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_4|NC_018877.1_3677045_3678317_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_3|NC_018877.1_3678309_3679584_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_2|NC_018877.1_3679676_3680300_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|319aa|up_1|NC_018877.1_3680568_3681525_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NC_018877.1_3681789_3682755_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|452aa|down_0|NC_018877.1_3685084_3686439_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|75aa|down_1|NC_018877.1_3686531_3686756_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_2|NC_018877.1_3686777_3687731_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_3|NC_018877.1_3687912_3688158_+	NA	NA|311aa|down_4|NC_018877.1_3688220_3689153_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_5|NC_018877.1_3689502_3691359_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_6|NC_018877.1_3691372_3692284_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|251aa|down_7|NC_018877.1_3692280_3693033_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_8|NC_018877.1_3693192_3694356_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_9|NC_018877.1_3694473_3695016_-	COG2322, COG2322, Predicted membrane protein [Function unknown]
GCF_000306745.1_ASM30674v1	NC_018877	Bacillus thuringiensis Bt407, complete sequence	5	5281933-5282066	3	CRISPRCasFinder	no		cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh,c2c4_V-U1,cas5,cas7,cas8a2,cas6	NA|45aa|up_0|NC_018877.1_5281464_5281599_-,NA	NA|227aa|up_9|NC_018877.1_5273443_5274124_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|294aa|up_8|NC_018877.1_5274142_5275024_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NC_018877.1_5275265_5276033_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NC_018877.1_5276140_5276842_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NC_018877.1_5276831_5277575_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NC_018877.1_5277835_5278513_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NC_018877.1_5278857_5279292_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NC_018877.1_5279721_5280723_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NC_018877.1_5280883_5281156_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NC_018877.1_5281464_5281599_-	NA	NA|235aa|down_0|NC_018877.1_5282953_5283658_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|281aa|down_1|NC_018877.1_5283657_5284500_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NC_018877.1_5284681_5285689_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NC_018877.1_5285788_5286808_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NC_018877.1_5287015_5288320_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NC_018877.1_5288359_5289070_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NC_018877.1_5289114_5289351_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NC_018877.1_5289553_5291074_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NC_018877.1_5291075_5292578_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NC_018877.1_5292574_5294437_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
GCF_000306745.1_ASM30674v1	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	1	4430-4536	1	CRISPRCasFinder	no		c2c4_V-U1,DEDDh,cas5,cas7,cas8a2,cas6,cas3	Orphan	TTTAAGTAATTAATAATTGACTAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,WYL,c2c9_V-U4,DinG,cas14k,DEDDh,c2c4_V-U1,cas5,cas7,cas8a2,cas6	NA|101aa|up_1|NC_018878.1_1907_2210_-,NA|270aa|down_2|NC_018878.1_9748_10558_+,NA|363aa|down_4|NC_018878.1_11091_12180_+,NA|65aa|down_7|NC_018878.1_14656_14851_+,NA|125aa|down_9|NC_018878.1_16530_16905_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|341aa|up_3|NC_018878.1_100_1123_+	pfam01939, NucS, Endonuclease NucS	NA|241aa|up_2|NC_018878.1_1145_1868_+	cd10027, UDG-F1-like, Uracil DNA glycosylase family 1 subfamily, includes Human uracil DNA glycosylase and similar proteins	NA|101aa|up_1|NC_018878.1_1907_2210_-	NA	NA|645aa|up_0|NC_018878.1_2375_4310_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|822aa|down_0|NC_018878.1_4654_7120_+	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|741aa|down_1|NC_018878.1_7405_9628_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|270aa|down_2|NC_018878.1_9748_10558_+	NA	NA|179aa|down_3|NC_018878.1_10550_11087_+	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|363aa|down_4|NC_018878.1_11091_12180_+	NA	NA|154aa|down_5|NC_018878.1_12353_12815_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|483aa|down_6|NC_018878.1_12912_14361_+	TIGR01391, DNA_primase, DNA primase, catalytic core	NA|65aa|down_7|NC_018878.1_14656_14851_+	NA	NA|485aa|down_8|NC_018878.1_14952_16407_+	cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif	NA|125aa|down_9|NC_018878.1_16530_16905_+	NA
