assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000300475.1_ASM30047v1	NC_018686	Bacillus thuringiensis MC28 plasmid pMC183, complete sequence	1	16801-17174	1	PILER-CR	no	RT	RT	Unclear	GCAGGAGCAGCAACAGTACAACGTGATGTAAATGTACAAAACAATGTAAGAGGAAA	56	4	10	16857-16875|16932-16956|16932-16956|16932-16956|17013-17037|17013-17037|17013-17037|17094-17118|17094-17118|17094-17118	NC_018693.1_4506416-4506398|NC_018686.1_17256-17280|NC_018686.1_17418-17442|NC_018686.1_17175-17199|NC_018686.1_17256-17280|NC_018686.1_17418-17442|NC_018686.1_17175-17199|NC_018686.1_17256-17280|NC_018686.1_17418-17442|NC_018686.1_17175-17199	NA	4	4	Orphan	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh,RT,cas14j,cas7,cas8c,cas5	NA|128aa|up_9|NC_018686.1_4981_5365_+,NA|278aa|up_7|NC_018686.1_6764_7598_+,NA|250aa|up_6|NC_018686.1_7594_8344_+,NA|121aa|up_5|NC_018686.1_8384_8747_+,NA|49aa|up_4|NC_018686.1_8765_8912_+,NA|84aa|up_3|NC_018686.1_8930_9182_+,NA|93aa|down_0|NC_018686.1_17804_18083_+,NA|70aa|down_1|NC_018686.1_18079_18289_+,NA|259aa|down_2|NC_018686.1_18257_19034_+,NA|223aa|down_4|NC_018686.1_19444_20113_+,NA|203aa|down_8|NC_018686.1_25843_26452_+	NA|128aa|up_9|NC_018686.1_4981_5365_+	NA	NA|450aa|up_8|NC_018686.1_5381_6731_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|278aa|up_7|NC_018686.1_6764_7598_+	NA	NA|250aa|up_6|NC_018686.1_7594_8344_+	NA	NA|121aa|up_5|NC_018686.1_8384_8747_+	NA	NA|49aa|up_4|NC_018686.1_8765_8912_+	NA	NA|84aa|up_3|NC_018686.1_8930_9182_+	NA	NA|100aa|up_2|NC_018686.1_9199_9499_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|642aa|up_1|NC_018686.1_9583_11509_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|876aa|up_0|NC_018686.1_11535_14163_+	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|93aa|down_0|NC_018686.1_17804_18083_+	NA	NA|70aa|down_1|NC_018686.1_18079_18289_+	NA	NA|259aa|down_2|NC_018686.1_18257_19034_+	NA	NA|105aa|down_3|NC_018686.1_19066_19381_+	pfam17332, pXO2-11, Uncharacterized protein pXO2-11	NA|223aa|down_4|NC_018686.1_19444_20113_+	NA	NA|646aa|down_5|NC_018686.1_20129_22067_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|141aa|down_6|NC_018686.1_22068_22491_+	pfam13702, Lysozyme_like, Lysozyme-like	RT|602aa|down_7|NC_018686.1_23143_24949_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|203aa|down_8|NC_018686.1_25843_26452_+	NA	NA|92aa|down_9|NC_018686.1_26540_26816_+	pfam17632, DUF5513, Family of unknown function (DUF5513)
GCF_000300475.1_ASM30047v1	NC_018693	Bacillus thuringiensis MC28, complete sequence	1	749187-749279	1	CRISPRCasFinder	no	DinG	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh	Type IV-A	ACAAAACACCTTAGTTGAAGGCATTATTA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh,RT,cas14j,cas7,cas8c,cas5	NA|81aa|up_8|NC_018693.1_741848_742091_+,NA|64aa|down_0|NC_018693.1_749451_749643_+,NA|74aa|down_1|NC_018693.1_749681_749903_+,NA|272aa|down_5|NC_018693.1_751795_752611_+,NA|68aa|down_6|NC_018693.1_752642_752846_+,NA|325aa|down_7|NC_018693.1_752927_753902_+,NA|130aa|down_8|NC_018693.1_754112_754502_+	NA|342aa|up_9|NC_018693.1_740393_741419_+	pfam10720, DUF2515, Protein of unknown function (DUF2515)	NA|81aa|up_8|NC_018693.1_741848_742091_+	NA	NA|115aa|up_7|NC_018693.1_742106_742451_+	pfam08807, DUF1798, Bacterial domain of unknown function (DUF1798)	NA|64aa|up_6|NC_018693.1_742476_742668_-	pfam14178, YppF, YppF-like protein	NA|170aa|up_5|NC_018693.1_742845_743355_+	pfam14179, YppG, YppG-like protein	NA|139aa|up_4|NC_018693.1_743512_743929_+	pfam11122, Spore-coat_CotD, Inner spore coat protein D	NA|185aa|up_3|NC_018693.1_743985_744540_+	PRK13660, PRK13660, hypothetical protein; Provisional	NA|112aa|up_2|NC_018693.1_744637_744973_+	PRK14127, PRK14127, cell division regulator GpsB	NA|380aa|up_1|NC_018693.1_745632_746772_+	COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|305aa|up_0|NC_018693.1_746889_747804_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|64aa|down_0|NC_018693.1_749451_749643_+	NA	NA|74aa|down_1|NC_018693.1_749681_749903_+	NA	NA|154aa|down_2|NC_018693.1_749926_750388_+	pfam15112, DUF4559, Domain of unknown function (DUF4559)	NA|294aa|down_3|NC_018693.1_750409_751291_+	pfam17236, DUF5309, Family of unknown function (DUF5309)	NA|58aa|down_4|NC_018693.1_751397_751571_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|272aa|down_5|NC_018693.1_751795_752611_+	NA	NA|68aa|down_6|NC_018693.1_752642_752846_+	NA	NA|325aa|down_7|NC_018693.1_752927_753902_+	NA	NA|130aa|down_8|NC_018693.1_754112_754502_+	NA	NA|526aa|down_9|NC_018693.1_754501_756079_+	PHA02533, 17, large terminase protein; Provisional
GCF_000300475.1_ASM30047v1	NC_018693	Bacillus thuringiensis MC28, complete sequence	2	2820391-2823746	1	CRT	no		csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh	Orphan	ACNGGNGCTACTGGNCCT	18	0	0	NA	NA	NA	74	74	Orphan	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh,RT,cas14j,cas7,cas8c,cas5	NA|46aa|up_2|NC_018693.1_2817443_2817581_+,NA|82aa|down_3|NC_018693.1_2827107_2827353_+	NA|221aa|up_9|NC_018693.1_2810518_2811181_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|247aa|up_8|NC_018693.1_2811129_2811870_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|445aa|up_7|NC_018693.1_2812140_2813475_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_6|NC_018693.1_2813523_2813913_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_5|NC_018693.1_2814088_2815360_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_4|NC_018693.1_2815352_2816627_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_3|NC_018693.1_2816719_2817343_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|46aa|up_2|NC_018693.1_2817443_2817581_+	NA	NA|319aa|up_1|NC_018693.1_2817613_2818570_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NC_018693.1_2818834_2819800_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|452aa|down_0|NC_018693.1_2824296_2825651_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|75aa|down_1|NC_018693.1_2825726_2825951_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_2|NC_018693.1_2825972_2826926_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_3|NC_018693.1_2827107_2827353_+	NA	NA|310aa|down_4|NC_018693.1_2827415_2828345_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_5|NC_018693.1_2828693_2830550_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_6|NC_018693.1_2830563_2831475_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|251aa|down_7|NC_018693.1_2831471_2832224_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_8|NC_018693.1_2832384_2833548_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_9|NC_018693.1_2833665_2834208_-	COG2322, COG2322, Predicted membrane protein [Function unknown]
GCF_000300475.1_ASM30047v1	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	1	25312-25427	1	CRISPRCasFinder	no		RT,csa3	Orphan	GTAACCAAATTTGTTATCTTTAGAACCA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh,RT,cas14j,cas7,cas8c,cas5	NA|153aa|up_9|NC_018687.1_13242_13701_-,NA|147aa|up_3|NC_018687.1_21199_21640_+,NA|68aa|up_2|NC_018687.1_22096_22300_+,NA|1083aa|down_0|NC_018687.1_26027_29276_+,NA|55aa|down_1|NC_018687.1_29467_29632_-,NA|261aa|down_2|NC_018687.1_29790_30573_+,NA|99aa|down_3|NC_018687.1_30725_31022_+,NA|62aa|down_4|NC_018687.1_31023_31209_+,NA|111aa|down_6|NC_018687.1_35980_36313_+,NA|87aa|down_7|NC_018687.1_36982_37243_+	NA|153aa|up_9|NC_018687.1_13242_13701_-	NA	NA|762aa|up_8|NC_018687.1_13844_16130_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|67aa|up_7|NC_018687.1_16274_16475_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|174aa|up_6|NC_018687.1_16672_17194_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|188aa|up_5|NC_018687.1_19218_19782_+	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators	NA|397aa|up_4|NC_018687.1_20002_21193_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|147aa|up_3|NC_018687.1_21199_21640_+	NA	NA|68aa|up_2|NC_018687.1_22096_22300_+	NA	NA|369aa|up_1|NC_018687.1_22475_23582_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|404aa|up_0|NC_018687.1_23900_25112_-	pfam01051, Rep_3, Initiator Replication protein	NA|1083aa|down_0|NC_018687.1_26027_29276_+	NA	NA|55aa|down_1|NC_018687.1_29467_29632_-	NA	NA|261aa|down_2|NC_018687.1_29790_30573_+	NA	NA|99aa|down_3|NC_018687.1_30725_31022_+	NA	NA|62aa|down_4|NC_018687.1_31023_31209_+	NA	NA|669aa|down_5|NC_018687.1_33171_35178_+	cd04085, delta_endotoxin_C, delta-endotoxin C-terminal domain may be associated with carbohydrate binding functionality	NA|111aa|down_6|NC_018687.1_35980_36313_+	NA	NA|87aa|down_7|NC_018687.1_36982_37243_+	NA	NA|236aa|down_8|NC_018687.1_37643_38351_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|201aa|down_9|NC_018687.1_39588_40191_+	pfam13814, Replic_Relax, Replication-relaxation
GCF_000300475.1_ASM30047v1	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	2	73038-73142	2	CRISPRCasFinder	no		RT,csa3	Orphan	ATTCCGTTACGATCAACGTAATTACTATG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh,RT,cas14j,cas7,cas8c,cas5	NA|91aa|up_9|NC_018687.1_54002_54275_-,NA|185aa|up_8|NC_018687.1_55201_55756_+,NA|89aa|up_7|NC_018687.1_56473_56740_-,NA|319aa|up_6|NC_018687.1_58193_59150_+,NA|271aa|up_5|NC_018687.1_59153_59966_+,NA|114aa|up_1|NC_018687.1_69936_70278_+,NA|328aa|down_4|NC_018687.1_80510_81494_+	NA|91aa|up_9|NC_018687.1_54002_54275_-	NA	NA|185aa|up_8|NC_018687.1_55201_55756_+	NA	NA|89aa|up_7|NC_018687.1_56473_56740_-	NA	NA|319aa|up_6|NC_018687.1_58193_59150_+	NA	NA|271aa|up_5|NC_018687.1_59153_59966_+	NA	NA|480aa|up_4|NC_018687.1_64145_65585_-	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins	NA|437aa|up_3|NC_018687.1_67023_68334_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|303aa|up_2|NC_018687.1_68335_69244_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|114aa|up_1|NC_018687.1_69936_70278_+	NA	NA|464aa|up_0|NC_018687.1_71638_73030_-	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins	NA|551aa|down_0|NC_018687.1_74227_75880_-	pfam17997, Cry1Ac_D5, Insecticidal delta-endotoxin CryIA(c) domain 5	NA|688aa|down_1|NC_018687.1_75993_78057_-	pfam03944, Endotoxin_C, delta endotoxin	NA|110aa|down_2|NC_018687.1_78224_78554_-	pfam13610, DDE_Tnp_IS240, DDE domain	NA|387aa|down_3|NC_018687.1_78994_80155_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|328aa|down_4|NC_018687.1_80510_81494_+	NA	NA|471aa|down_5|NC_018687.1_82899_84312_+	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins	NA|508aa|down_6|NC_018687.1_86091_87615_-	pfam17997, Cry1Ac_D5, Insecticidal delta-endotoxin CryIA(c) domain 5	NA|309aa|down_7|NC_018687.1_91273_92200_-	cd20223, PFM_epsilon-toxin-like, pore-forming module of Clostridium perfringens epsilon-toxin and similar aerolysin-type beta-barrel pore-forming proteins	NA|478aa|down_8|NC_018687.1_92634_94068_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|348aa|down_9|NC_018687.1_95832_96876_-	COG3177, COG3177, Fic family protein [Function unknown]
GCF_000300475.1_ASM30047v1	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	1	300023-300113	1	CRISPRCasFinder	no	csa3	cas14j,csa3	Type I-A	TAAAAGATAAAGAAGAGGATGTAAAAGC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,c2c9_V-U4,WYL,DEDDh,RT,cas14j,cas7,cas8c,cas5	NA|570aa|up_5|NC_018689.1_290637_292347_+,NA|97aa|up_3|NC_018689.1_294455_294746_+,NA|161aa|up_0|NC_018689.1_297793_298276_+,NA|199aa|down_1|NC_018689.1_305023_305620_+,NA|101aa|down_2|NC_018689.1_305872_306175_-,NA|125aa|down_3|NC_018689.1_306241_306616_-,NA|324aa|down_5|NC_018689.1_308460_309432_+,NA|34aa|down_6|NC_018689.1_310661_310763_-,NA|93aa|down_8|NC_018689.1_313317_313596_+,NA|62aa|down_9|NC_018689.1_314198_314384_+	NA|244aa|up_9|NC_018689.1_283000_283732_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|512aa|up_8|NC_018689.1_283724_285260_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|449aa|up_7|NC_018689.1_285376_286723_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|470aa|up_6|NC_018689.1_286987_288397_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|570aa|up_5|NC_018689.1_290637_292347_+	NA	NA|369aa|up_4|NC_018689.1_293346_294453_+	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|97aa|up_3|NC_018689.1_294455_294746_+	NA	NA|135aa|up_2|NC_018689.1_294787_295192_+	pfam12648, TcpE, TcpE family	NA|847aa|up_1|NC_018689.1_295251_297792_+	pfam12846, AAA_10, AAA-like domain	NA|161aa|up_0|NC_018689.1_297793_298276_+	NA	NA|221aa|down_0|NC_018689.1_304309_304972_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|199aa|down_1|NC_018689.1_305023_305620_+	NA	NA|101aa|down_2|NC_018689.1_305872_306175_-	NA	NA|125aa|down_3|NC_018689.1_306241_306616_-	NA	NA|290aa|down_4|NC_018689.1_307591_308461_+	PRK00087, PRK00087, bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1	NA|324aa|down_5|NC_018689.1_308460_309432_+	NA	NA|34aa|down_6|NC_018689.1_310661_310763_-	NA	csa3|99aa|down_7|NC_018689.1_311494_311791_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|93aa|down_8|NC_018689.1_313317_313596_+	NA	NA|62aa|down_9|NC_018689.1_314198_314384_+	NA
