assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	1	1164472-1165293	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|47aa|up_1|NC_018650.1_1163181_1163322_-,NA	NA|919aa|up_9|NC_018650.1_1151065_1153822_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NC_018650.1_1153878_1155180_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NC_018650.1_1155227_1157462_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NC_018650.1_1157539_1157788_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NC_018650.1_1157787_1158123_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NC_018650.1_1158193_1158985_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NC_018650.1_1159212_1160850_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NC_018650.1_1160937_1162236_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NC_018650.1_1163181_1163322_-	NA	NA|224aa|up_0|NC_018650.1_1163460_1164132_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NC_018650.1_1165931_1167410_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NC_018650.1_1167436_1168714_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NC_018650.1_1169032_1169818_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NC_018650.1_1169887_1171342_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NC_018650.1_1171363_1172773_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NC_018650.1_1172750_1173530_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NC_018650.1_1173526_1174387_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NC_018650.1_1174534_1175110_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NC_018650.1_1175126_1175387_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NC_018650.1_1175377_1176649_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	2	1192342-1192431	2	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	1	1	TypeI-E	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|51aa|up_9|NC_018650.1_1181991_1182144_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NC_018650.1_1182220_1183333_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NC_018650.1_1183686_1186386_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NC_018650.1_1186483_1188046_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NC_018650.1_1188042_1188579_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NC_018650.1_1188590_1189646_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NC_018650.1_1189656_1190403_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NC_018650.1_1190384_1191035_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NC_018650.1_1191031_1191952_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NC_018650.1_1191951_1192245_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NC_018650.1_1192512_1193550_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NC_018650.1_1193801_1194710_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NC_018650.1_1194711_1196139_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NC_018650.1_1196138_1196744_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NC_018650.1_1196793_1197117_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NC_018650.1_1197310_1197622_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NC_018650.1_1197640_1198351_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NC_018650.1_1198350_1198830_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NC_018650.1_1198826_1199876_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NC_018650.1_1199856_1200618_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	3	2432060-2432183	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA|30aa|down_7|NC_018650.1_2441079_2441169_+	NA|471aa|up_9|NC_018650.1_2421513_2422926_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NC_018650.1_2423482_2423692_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NC_018650.1_2424147_2424774_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NC_018650.1_2424794_2426897_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NC_018650.1_2426909_2427548_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NC_018650.1_2427611_2428280_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NC_018650.1_2428276_2429062_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NC_018650.1_2429065_2429878_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NC_018650.1_2429889_2431494_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NC_018650.1_2431619_2431925_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NC_018650.1_2432497_2433754_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NC_018650.1_2433794_2435168_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NC_018650.1_2435382_2436024_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NC_018650.1_2436063_2437212_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NC_018650.1_2437502_2438714_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NC_018650.1_2438826_2439759_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NC_018650.1_2439755_2440781_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NC_018650.1_2441079_2441169_+	NA	NA|390aa|down_8|NC_018650.1_2441334_2442504_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NC_018650.1_2442649_2443231_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	4	3247819-3247910	4	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|70aa|up_9|NC_018650.1_3237069_3237279_-,NA|422aa|down_1|NC_018650.1_3257343_3258609_-,NA|149aa|down_3|NC_018650.1_3258880_3259327_-,NA|219aa|down_4|NC_018650.1_3259329_3259986_-,NA|134aa|down_5|NC_018650.1_3260080_3260482_-,NA|206aa|down_8|NC_018650.1_3261734_3262352_-,NA|93aa|down_9|NC_018650.1_3262357_3262636_-	NA|70aa|up_9|NC_018650.1_3237069_3237279_-	NA	NA|1321aa|up_8|NC_018650.1_3237333_3241296_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NC_018650.1_3241335_3241974_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NC_018650.1_3242261_3243353_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NC_018650.1_3243352_3244045_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NC_018650.1_3244056_3244443_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NC_018650.1_3244450_3245251_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NC_018650.1_3245260_3245851_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NC_018650.1_3245861_3246356_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NC_018650.1_3246376_3247705_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|2794aa|down_0|NC_018650.1_3248892_3257274_-	pfam18799, LPD5, Large polyvalent protein-associated domain 5	NA|422aa|down_1|NC_018650.1_3257343_3258609_-	NA	NA|84aa|down_2|NC_018650.1_3258619_3258871_-	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein	NA|149aa|down_3|NC_018650.1_3258880_3259327_-	NA	NA|219aa|down_4|NC_018650.1_3259329_3259986_-	NA	NA|134aa|down_5|NC_018650.1_3260080_3260482_-	NA	NA|47aa|down_6|NC_018650.1_3260538_3260679_-	PRK09759, PRK09759, type I toxin-antitoxin system toxin HokA	NA|245aa|down_7|NC_018650.1_3260909_3261644_-	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|206aa|down_8|NC_018650.1_3261734_3262352_-	NA	NA|93aa|down_9|NC_018650.1_3262357_3262636_-	NA
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	5	3608026-3608139	2	PILER-CR	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|47aa|up_8|NC_018650.1_3602745_3602886_-,NA|34aa|up_4|NC_018650.1_3604145_3604247_-,NA|84aa|up_3|NC_018650.1_3604343_3604595_-,NA|101aa|up_1|NC_018650.1_3606562_3606865_-,NA|72aa|down_9|NC_018650.1_3613273_3613489_+	NA|128aa|up_9|NC_018650.1_3602276_3602660_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|47aa|up_8|NC_018650.1_3602745_3602886_-	NA	NA|97aa|up_7|NC_018650.1_3603240_3603531_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_6|NC_018650.1_3603523_3603694_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_5|NC_018650.1_3603693_3604149_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_4|NC_018650.1_3604145_3604247_-	NA	NA|84aa|up_3|NC_018650.1_3604343_3604595_-	NA	NA|80aa|up_2|NC_018650.1_3605171_3605411_-	pfam10548, P22_AR_C, P22AR C-terminal domain	NA|101aa|up_1|NC_018650.1_3606562_3606865_-	NA	NA|234aa|up_0|NC_018650.1_3606861_3607563_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NC_018650.1_3608575_3609115_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NC_018650.1_3609184_3609415_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NC_018650.1_3609520_3610210_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NC_018650.1_3610807_3611014_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NC_018650.1_3611089_3611386_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NC_018650.1_3611391_3612177_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NC_018650.1_3612173_3612854_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NC_018650.1_3612850_3613033_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NC_018650.1_3613005_3613197_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|down_9|NC_018650.1_3613273_3613489_+	NA
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	6	3617822-3617966	5	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|72aa|up_6|NC_018650.1_3613273_3613489_+,NA|201aa|up_4|NC_018650.1_3614019_3614622_-,NA|56aa|up_3|NC_018650.1_3614864_3615032_+,NA	NA|227aa|up_9|NC_018650.1_3612173_3612854_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NC_018650.1_3612850_3613033_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NC_018650.1_3613005_3613197_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|up_6|NC_018650.1_3613273_3613489_+	NA	NA|74aa|up_5|NC_018650.1_3613587_3613809_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NC_018650.1_3614019_3614622_-	NA	NA|56aa|up_3|NC_018650.1_3614864_3615032_+	NA	NA|73aa|up_2|NC_018650.1_3615071_3615290_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NC_018650.1_3615267_3616338_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NC_018650.1_3616472_3617756_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NC_018650.1_3617989_3620251_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NC_018650.1_3620433_3621867_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NC_018650.1_3621942_3622995_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NC_018650.1_3623178_3624132_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NC_018650.1_3624172_3625168_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NC_018650.1_3625322_3626141_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NC_018650.1_3626141_3627200_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NC_018650.1_3627202_3627892_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NC_018650.1_3627891_3628665_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NC_018650.1_3628831_3628981_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	7	3855771-3855867	6	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|231aa|up_9|NC_018650.1_3847556_3848249_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NC_018650.1_3848468_3849011_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NC_018650.1_3849491_3850358_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NC_018650.1_3850359_3850572_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NC_018650.1_3850679_3851201_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NC_018650.1_3851236_3852622_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NC_018650.1_3852795_3853290_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NC_018650.1_3853292_3854015_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NC_018650.1_3854132_3854642_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NC_018650.1_3854638_3855706_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NC_018650.1_3855900_3856794_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NC_018650.1_3856790_3857606_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NC_018650.1_3857616_3858876_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NC_018650.1_3858885_3860553_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NC_018650.1_3860869_3861919_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NC_018650.1_3861940_3863176_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NC_018650.1_3863186_3863972_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NC_018650.1_3864100_3865246_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NC_018650.1_3865267_3866569_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NC_018650.1_3866625_3867987_-	PRK08044, PRK08044, allantoinase AllB
GCF_000299255.1_ASM29925v1	NC_018650	Escherichia coli O104:H4 str. 2009EL-2050, complete sequence	8	4384019-4384151	3	PILER-CR	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|126aa|up_9|NC_018650.1_4374722_4375100_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NC_018650.1_4375106_4375949_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NC_018650.1_4376026_4376506_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NC_018650.1_4376697_4378560_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NC_018650.1_4378552_4379083_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NC_018650.1_4379190_4380522_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NC_018650.1_4380580_4380868_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NC_018650.1_4380864_4382151_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NC_018650.1_4382201_4383143_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NC_018650.1_4383157_4383928_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NC_018650.1_4384401_4385916_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NC_018650.1_4385946_4387089_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NC_018650.1_4387217_4388435_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NC_018650.1_4388508_4390062_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NC_018650.1_4390170_4390956_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NC_018650.1_4390961_4391552_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NC_018650.1_4391637_4392033_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NC_018650.1_4392293_4395515_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NC_018650.1_4395532_4396681_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NC_018650.1_4397136_4397958_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_000299255.1_ASM29925v1	NC_018651	Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence	1	62058-62312	1	PILER-CR	no	DEDDh	DEDDh	Unclear	GTATGCTGTCAGCGGT	16	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|190aa|up_5|NC_018651.1_54921_55491_-,NA|248aa|up_4|NC_018651.1_55500_56244_-,NA|215aa|up_1|NC_018651.1_59719_60364_-,NA|405aa|up_0|NC_018651.1_60565_61780_+,NA|71aa|down_0|NC_018651.1_62359_62572_-,NA|112aa|down_1|NC_018651.1_62571_62907_-,NA|92aa|down_2|NC_018651.1_63122_63398_-,NA|130aa|down_4|NC_018651.1_63940_64330_-,NA|247aa|down_5|NC_018651.1_64350_65091_-,NA|67aa|down_8|NC_018651.1_66892_67093_-,NA|89aa|down_9|NC_018651.1_68261_68528_-	NA|368aa|up_9|NC_018651.1_49063_50167_-	pfam00303, Thymidylat_synt, Thymidylate synthase	NA|290aa|up_8|NC_018651.1_50334_51204_-	pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase	NA|381aa|up_7|NC_018651.1_51281_52424_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|772aa|up_6|NC_018651.1_52532_54848_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|190aa|up_5|NC_018651.1_54921_55491_-	NA	NA|248aa|up_4|NC_018651.1_55500_56244_-	NA	NA|639aa|up_3|NC_018651.1_56233_58150_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|362aa|up_2|NC_018651.1_58379_59465_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|215aa|up_1|NC_018651.1_59719_60364_-	NA	NA|405aa|up_0|NC_018651.1_60565_61780_+	NA	NA|71aa|down_0|NC_018651.1_62359_62572_-	NA	NA|112aa|down_1|NC_018651.1_62571_62907_-	NA	NA|92aa|down_2|NC_018651.1_63122_63398_-	NA	NA|142aa|down_3|NC_018651.1_63453_63879_-	PHA02053, PHA02053, hypothetical protein	NA|130aa|down_4|NC_018651.1_63940_64330_-	NA	NA|247aa|down_5|NC_018651.1_64350_65091_-	NA	NA|275aa|down_6|NC_018651.1_65138_65963_-	pfam18406, DUF1281_C, Ferredoxin-like domain in Api92-like protein	NA|277aa|down_7|NC_018651.1_66058_66889_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|67aa|down_8|NC_018651.1_66892_67093_-	NA	NA|89aa|down_9|NC_018651.1_68261_68528_-	NA
