assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	1	25833-25918	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	CCGCCCTGCCCCTGGTCGGGGTAGCC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA,NA|141aa|down_6|NC_018612.1_33279_33702_+	NA|183aa|up_9|NC_018612.1_13829_14378_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_8|NC_018612.1_14400_14826_-	pfam10756, bPH_6, Bacterial PH domain	NA|94aa|up_7|NC_018612.1_14981_15263_-	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed	NA|248aa|up_6|NC_018612.1_15392_16136_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|229aa|up_5|NC_018612.1_16180_16867_+	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|627aa|up_4|NC_018612.1_16844_18725_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|424aa|up_3|NC_018612.1_18721_19993_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|493aa|up_2|NC_018612.1_19989_21468_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|505aa|up_1|NC_018612.1_22871_24386_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|156aa|up_0|NC_018612.1_24441_24909_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|146aa|down_0|NC_018612.1_27097_27535_+	pfam15599, Imm63, Immunity protein 63	NA|119aa|down_1|NC_018612.1_27555_27912_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|166aa|down_2|NC_018612.1_27977_28475_-	pfam12867, DinB_2, DinB superfamily	NA|88aa|down_3|NC_018612.1_28700_28964_+	PRK05883, PRK05883, acyl carrier protein; Validated	NA|520aa|down_4|NC_018612.1_28960_30520_+	PRK05851, PRK05851, long-chain-fatty acid--ACP ligase MbtM	NA|196aa|down_5|NC_018612.1_30532_31120_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|141aa|down_6|NC_018612.1_33279_33702_+	NA	NA|110aa|down_7|NC_018612.1_33853_34183_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|332aa|down_8|NC_018612.1_34169_35165_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|461aa|down_9|NC_018612.1_35224_36607_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	2	1507986-1508068	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	CGCCCGGCGGCGCCGCGCTCGCGATCGGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA,NA|191aa|down_1|NC_018612.1_1509988_1510561_+	NA|454aa|up_9|NC_018612.1_1493995_1495357_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|284aa|up_8|NC_018612.1_1495353_1496205_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|328aa|up_7|NC_018612.1_1496348_1497332_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|456aa|up_6|NC_018612.1_1497449_1498817_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|279aa|up_5|NC_018612.1_1498897_1499734_+	cd10031, UDG-F5_TTUDGB_like, Uracil DNA glycosylase family 5, includes Thermotoga maritima TTUDGB and similar proteins	NA|377aa|up_4|NC_018612.1_1499730_1500861_+	PRK05868, PRK05868, FAD-binding protein	NA|344aa|up_3|NC_018612.1_1500908_1501940_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|1289aa|up_2|NC_018612.1_1501948_1505815_-	cd01948, EAL, EAL domain	NA|145aa|up_1|NC_018612.1_1506034_1506469_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|463aa|up_0|NC_018612.1_1506552_1507941_+	PRK12470, PRK12470, amidase; Provisional	NA|375aa|down_0|NC_018612.1_1508584_1509709_+	pfam16701, Ad_Cy_reg, Adenylate cyclase regulatory domain	NA|191aa|down_1|NC_018612.1_1509988_1510561_+	NA	NA|589aa|down_2|NC_018612.1_1510604_1512371_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|639aa|down_3|NC_018612.1_1512549_1514466_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|589aa|down_4|NC_018612.1_1514462_1516229_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|down_5|NC_018612.1_1516410_1516968_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|down_6|NC_018612.1_1516976_1517507_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|down_7|NC_018612.1_1517599_1518103_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|down_8|NC_018612.1_1518265_1519417_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|down_9|NC_018612.1_1519413_1522035_+	pfam13175, AAA_15, AAA ATPase domain
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	3	2381568-2381681	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	GGTGTGATCGCGGCTTCGCCGCTCAACA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA,NA|90aa|down_3|NC_018612.1_2384974_2385244_-,NA|356aa|down_4|NC_018612.1_2385240_2386308_-,NA|101aa|down_5|NC_018612.1_2386417_2386720_+	NA|493aa|up_9|NC_018612.1_2372644_2374123_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|321aa|up_8|NC_018612.1_2374122_2375085_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|386aa|up_7|NC_018612.1_2375353_2376511_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|236aa|up_6|NC_018612.1_2376611_2377319_+	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|259aa|up_5|NC_018612.1_2377324_2378101_+	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|215aa|up_4|NC_018612.1_2378167_2378812_+	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|up_3|NC_018612.1_2378977_2379268_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|268aa|up_2|NC_018612.1_2379532_2380336_+	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|113aa|up_1|NC_018612.1_2380428_2380767_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|225aa|up_0|NC_018612.1_2380770_2381445_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|452aa|down_0|NC_018612.1_2381952_2383308_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|177aa|down_1|NC_018612.1_2383344_2383875_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|355aa|down_2|NC_018612.1_2383877_2384942_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|90aa|down_3|NC_018612.1_2384974_2385244_-	NA	NA|356aa|down_4|NC_018612.1_2385240_2386308_-	NA	NA|101aa|down_5|NC_018612.1_2386417_2386720_+	NA	NA|251aa|down_6|NC_018612.1_2386794_2387547_+	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|196aa|down_7|NC_018612.1_2387608_2388196_+	TIGR03847, TIGR03847, conserved hypothetical protein	NA|263aa|down_8|NC_018612.1_2388206_2388995_+	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|256aa|down_9|NC_018612.1_2389070_2389838_+	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	4	4037645-4037731	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	GCCACGGCCGCGCTCGCGATCACCACTGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA|415aa|up_8|NC_018612.1_4029190_4030435_+,NA	NA|397aa|up_9|NC_018612.1_4028007_4029198_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|415aa|up_8|NC_018612.1_4029190_4030435_+	NA	NA|277aa|up_7|NC_018612.1_4030437_4031268_+	PRK06180, PRK06180, short chain dehydrogenase; Provisional	NA|310aa|up_6|NC_018612.1_4031279_4032209_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|228aa|up_5|NC_018612.1_4032214_4032898_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|316aa|up_4|NC_018612.1_4032939_4033887_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|195aa|up_3|NC_018612.1_4033932_4034517_+	pfam12028, DUF3515, Protein of unknown function (DUF3515)	NA|382aa|up_2|NC_018612.1_4034517_4035663_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|348aa|up_1|NC_018612.1_4035694_4036738_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|217aa|up_0|NC_018612.1_4036893_4037544_+	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|734aa|down_0|NC_018612.1_4037743_4039945_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|316aa|down_1|NC_018612.1_4040029_4040977_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|216aa|down_2|NC_018612.1_4041090_4041738_-	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]	NA|199aa|down_3|NC_018612.1_4041949_4042546_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|480aa|down_4|NC_018612.1_4042572_4044012_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|234aa|down_5|NC_018612.1_4044097_4044799_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|171aa|down_6|NC_018612.1_4044849_4045362_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|489aa|down_7|NC_018612.1_4045746_4047213_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|269aa|down_8|NC_018612.1_4047209_4048016_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|439aa|down_9|NC_018612.1_4048302_4049619_+	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	5	4691857-4691954	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	CCGCCGCGCCCGGCTTCGCCGCGCTTGCGATCG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA|216aa|up_8|NC_018612.1_4682416_4683064_-,NA	NA|340aa|up_9|NC_018612.1_4681389_4682409_-	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|216aa|up_8|NC_018612.1_4682416_4683064_-	NA	NA|592aa|up_7|NC_018612.1_4683044_4684820_-	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|232aa|up_6|NC_018612.1_4684874_4685570_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|839aa|up_5|NC_018612.1_4685566_4688083_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|208aa|up_4|NC_018612.1_4688069_4688693_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|189aa|up_3|NC_018612.1_4688689_4689256_-	pfam14333, DUF4389, Domain of unknown function (DUF4389)	NA|403aa|up_2|NC_018612.1_4689279_4690488_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|240aa|up_1|NC_018612.1_4690502_4691222_-	cd20301, cupin_ChrR, anti-ECFsigma factor, ChrR , cupin domain	NA|182aa|up_0|NC_018612.1_4691252_4691798_-	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL	NA|268aa|down_0|NC_018612.1_4691962_4692766_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|182aa|down_1|NC_018612.1_4692768_4693314_-	PRK00279, adk, adenylate kinase; Reviewed	NA|442aa|down_2|NC_018612.1_4693310_4694636_-	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|308aa|down_3|NC_018612.1_4694882_4695806_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|223aa|down_4|NC_018612.1_4695814_4696483_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|454aa|down_5|NC_018612.1_4696492_4697854_-	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases	NA|327aa|down_6|NC_018612.1_4697884_4698865_+	cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|218aa|down_7|NC_018612.1_4698861_4699515_+	PRK05874, PRK05874, L-fuculose-phosphate aldolase; Validated	NA|306aa|down_8|NC_018612.1_4699514_4700432_+	cd16277, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|411aa|down_9|NC_018612.1_4700441_4701674_-	COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	6	5132362-5132489	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	ATCGCCGGCGCCGCCAAGAAACCCGGGGCCAAGAA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA|240aa|up_4|NC_018612.1_5123888_5124608_+,NA|246aa|up_3|NC_018612.1_5124627_5125365_+,NA	NA|214aa|up_9|NC_018612.1_5118596_5119238_-	PRK14142, PRK14142, heat shock protein GrpE; Provisional	NA|620aa|up_8|NC_018612.1_5119234_5121094_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|198aa|up_7|NC_018612.1_5121412_5122006_+	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau	NA|406aa|up_6|NC_018612.1_5122118_5123336_+	TIGR00836, Ammonium_transporter, ammonium transporter	NA|181aa|up_5|NC_018612.1_5123346_5123889_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|240aa|up_4|NC_018612.1_5123888_5124608_+	NA	NA|246aa|up_3|NC_018612.1_5124627_5125365_+	NA	NA|516aa|up_2|NC_018612.1_5125412_5126960_-	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|195aa|up_1|NC_018612.1_5127426_5128011_+	pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein	NA|559aa|up_0|NC_018612.1_5128107_5129784_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|435aa|down_0|NC_018612.1_5132978_5134283_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|422aa|down_1|NC_018612.1_5134315_5135581_+	pfam07907, YibE_F, YibE/F-like protein	NA|292aa|down_2|NC_018612.1_5135577_5136453_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|125aa|down_3|NC_018612.1_5136487_5136862_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|252aa|down_4|NC_018612.1_5136891_5137647_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|219aa|down_5|NC_018612.1_5137747_5138404_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|441aa|down_6|NC_018612.1_5138643_5139966_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|155aa|down_7|NC_018612.1_5139984_5140449_-	PRK09553, tauD, taurine dioxygenase; Reviewed	NA|442aa|down_8|NC_018612.1_5140560_5141886_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|474aa|down_9|NC_018612.1_5141982_5143404_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	7	5338777-5338860	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	GATTGCCCGCCTCCTCACTCGCGCCGT	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA|49aa|up_6|NC_018612.1_5331742_5331889_+,NA|471aa|up_0|NC_018612.1_5337359_5338772_+,NA|185aa|down_7|NC_018612.1_5345783_5346338_-,NA|227aa|down_9|NC_018612.1_5347302_5347983_-	NA|147aa|up_9|NC_018612.1_5329386_5329827_-	pfam03779, SPW, SPW repeat	NA|328aa|up_8|NC_018612.1_5329943_5330927_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|219aa|up_7|NC_018612.1_5330928_5331585_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|49aa|up_6|NC_018612.1_5331742_5331889_+	NA	NA|706aa|up_5|NC_018612.1_5331931_5334049_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|171aa|up_4|NC_018612.1_5334045_5334558_-	TIGR04338, hypothetical_protein, putative metallohydrolase, TIGR04338 family	NA|250aa|up_3|NC_018612.1_5334554_5335304_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|278aa|up_2|NC_018612.1_5335424_5336258_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|338aa|up_1|NC_018612.1_5336332_5337346_+	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|471aa|up_0|NC_018612.1_5337359_5338772_+	NA	NA|378aa|down_0|NC_018612.1_5338866_5340000_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|293aa|down_1|NC_018612.1_5340074_5340953_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|242aa|down_2|NC_018612.1_5340978_5341704_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|468aa|down_3|NC_018612.1_5341760_5343164_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|370aa|down_4|NC_018612.1_5343243_5344353_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|222aa|down_5|NC_018612.1_5344345_5345011_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|244aa|down_6|NC_018612.1_5345085_5345817_-	PRK05996, motB, MotB family protein	NA|185aa|down_7|NC_018612.1_5345783_5346338_-	NA	NA|324aa|down_8|NC_018612.1_5346334_5347306_-	pfam06271, RDD, RDD family	NA|227aa|down_9|NC_018612.1_5347302_5347983_-	NA
GCF_000298095.1_ASM29809v1	NC_018612	Mycobacterium intracellulare subsp. intracellulare MTCC 9506, complete sequence	8	5568286-5568429	1	PILER-CR	no		csa3,DEDDh,cas3,DinG,cas4,WYL,RT	Orphan	GTCGGCCAGCCCGTCGCCGTCGGTGTCGAGCAGCCG	36	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,RT	NA|127aa|up_9|NC_018612.1_5550585_5550966_+,NA|259aa|up_4|NC_018612.1_5560612_5561389_-,NA|184aa|up_2|NC_018612.1_5563892_5564444_-,NA|801aa|down_2|NC_018612.1_5571619_5574022_+,NA|257aa|down_5|NC_018612.1_5578382_5579153_+,NA|251aa|down_8|NC_018612.1_5581976_5582729_-	NA|127aa|up_9|NC_018612.1_5550585_5550966_+	NA	NA|952aa|up_8|NC_018612.1_5550958_5553814_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|1405aa|up_7|NC_018612.1_5553794_5558009_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|496aa|up_6|NC_018612.1_5558012_5559500_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|279aa|up_5|NC_018612.1_5559502_5560339_-	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains	NA|259aa|up_4|NC_018612.1_5560612_5561389_-	NA	NA|751aa|up_3|NC_018612.1_5561650_5563903_-	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|184aa|up_2|NC_018612.1_5563892_5564444_-	NA	NA|110aa|up_1|NC_018612.1_5565789_5566119_-	pfam10817, DUF2563, Protein of unknown function (DUF2563)	NA|660aa|up_0|NC_018612.1_5566248_5568228_-	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|481aa|down_0|NC_018612.1_5568801_5570244_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|245aa|down_1|NC_018612.1_5570888_5571623_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|801aa|down_2|NC_018612.1_5571619_5574022_+	NA	NA|1190aa|down_3|NC_018612.1_5574087_5577657_+	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]	NA|196aa|down_4|NC_018612.1_5577735_5578323_+	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed	NA|257aa|down_5|NC_018612.1_5578382_5579153_+	NA	NA|337aa|down_6|NC_018612.1_5579256_5580267_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|118aa|down_7|NC_018612.1_5580263_5580617_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|251aa|down_8|NC_018612.1_5581976_5582729_-	NA	NA|332aa|down_9|NC_018612.1_5582992_5583988_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein
