assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000297075.2_Ppseudo_final	NZ_HG916826	Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344	1	618496-618595	1	CRISPRCasFinder	no	RT	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Unclear	CCGGTTATGCGGGCGCGCGGACGTGTCATGCCT	33	0	0	NA	NA	NA	1	1	Orphan	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA|176aa|up_6|NZ_HG916826.1_612198_612726_-,NA|178aa|up_3|NZ_HG916826.1_614366_614900_-,NA|161aa|up_2|NZ_HG916826.1_615171_615654_-,NA|242aa|down_1|NZ_HG916826.1_619164_619890_-	NA|167aa|up_9|NZ_HG916826.1_607081_607582_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|212aa|up_8|NZ_HG916826.1_607745_608381_-	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	RT|474aa|up_7|NZ_HG916826.1_610297_611719_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|176aa|up_6|NZ_HG916826.1_612198_612726_-	NA	NA|299aa|up_5|NZ_HG916826.1_613001_613898_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|142aa|up_4|NZ_HG916826.1_613936_614362_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|178aa|up_3|NZ_HG916826.1_614366_614900_-	NA	NA|161aa|up_2|NZ_HG916826.1_615171_615654_-	NA	NA|422aa|up_1|NZ_HG916826.1_616104_617370_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|326aa|up_0|NZ_HG916826.1_617432_618410_-	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|146aa|down_0|NZ_HG916826.1_618714_619152_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|242aa|down_1|NZ_HG916826.1_619164_619890_-	NA	NA|308aa|down_2|NZ_HG916826.1_620055_620979_+	cd20004, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein such as CUT2	NA|258aa|down_3|NZ_HG916826.1_621058_621832_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|252aa|down_4|NZ_HG916826.1_621885_622641_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|288aa|down_5|NZ_HG916826.1_623349_624213_+	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]	NA|89aa|down_6|NZ_HG916826.1_624282_624549_+	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein	NA|148aa|down_7|NZ_HG916826.1_624623_625067_+	cd12108, Hr-like, Hemerythrin-like domain	NA|182aa|down_8|NZ_HG916826.1_625168_625714_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|567aa|down_9|NZ_HG916826.1_625819_627520_-	PRK13207, ureC, urease subunit alpha; Reviewed
GCF_000297075.2_Ppseudo_final	NZ_HG916826	Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344	2	830038-832387	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	38,38,25	38	TypeI-E	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA|211aa|up_9|NZ_HG916826.1_816544_817177_-,NA	NA|211aa|up_9|NZ_HG916826.1_816544_817177_-	NA	NA|430aa|up_8|NZ_HG916826.1_817176_818466_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|208aa|up_7|NZ_HG916826.1_818488_819112_-	PRK00043, thiE, thiamine phosphate synthase	NA|266aa|up_6|NZ_HG916826.1_819108_819906_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|387aa|up_5|NZ_HG916826.1_820049_821210_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|249aa|up_4|NZ_HG916826.1_821300_822047_+	TIGR03950, hypothetical_protein, siderophore ferric iron reductase, AHA_1954 family	NA|256aa|up_3|NZ_HG916826.1_822040_822808_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|659aa|up_2|NZ_HG916826.1_822810_824787_+	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB	NA|214aa|up_1|NZ_HG916826.1_827664_828306_+	PRK14996, PRK14996, TetR family transcriptional regulator; Provisional	NA|550aa|up_0|NZ_HG916826.1_828302_829952_+	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	cas3|886aa|down_0|NZ_HG916826.1_832595_835253_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|94aa|down_1|NZ_HG916826.1_835255_835537_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|97aa|down_2|NZ_HG916826.1_835533_835824_-	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|84aa|down_3|NZ_HG916826.1_836089_836341_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|142aa|down_4|NZ_HG916826.1_836340_836766_+	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas8e|512aa|down_5|NZ_HG916826.1_836875_838411_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|181aa|down_6|NZ_HG916826.1_838407_838950_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|381aa|down_7|NZ_HG916826.1_838960_840103_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|221aa|down_8|NZ_HG916826.1_840105_840768_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|205aa|down_9|NZ_HG916826.1_840742_841357_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e
GCF_000297075.2_Ppseudo_final	NZ_HG916826	Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344	3	842637-846204	2,3,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG	29,29,29,29	1	1	842972-843003	NZ_HG916826.1_185757-185726	I-E:I-E:I-E:I-E	56,58,58,56	58	TypeI-E	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA,NA|140aa|down_9|NZ_HG916826.1_854757_855177_-	NA|97aa|up_9|NZ_HG916826.1_835533_835824_-	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|84aa|up_8|NZ_HG916826.1_836089_836341_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|142aa|up_7|NZ_HG916826.1_836340_836766_+	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas8e|512aa|up_6|NZ_HG916826.1_836875_838411_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|181aa|up_5|NZ_HG916826.1_838407_838950_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|381aa|up_4|NZ_HG916826.1_838960_840103_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|221aa|up_3|NZ_HG916826.1_840105_840768_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|205aa|up_2|NZ_HG916826.1_840742_841357_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|305aa|up_1|NZ_HG916826.1_841356_842271_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|100aa|up_0|NZ_HG916826.1_842270_842570_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|228aa|down_0|NZ_HG916826.1_846499_847183_+	pfam01891, CbiM, Cobalt uptake substrate-specific transmembrane region	NA|502aa|down_1|NZ_HG916826.1_847247_848753_+	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|148aa|down_2|NZ_HG916826.1_849618_850062_-	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|344aa|down_3|NZ_HG916826.1_850274_851306_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|190aa|down_4|NZ_HG916826.1_851479_852049_+	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|131aa|down_5|NZ_HG916826.1_852257_852650_-	cd01040, Mb-like, myoglobin-like; M family globin domain	NA|73aa|down_6|NZ_HG916826.1_852733_852952_-	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|160aa|down_7|NZ_HG916826.1_853042_853522_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|294aa|down_8|NZ_HG916826.1_853871_854753_-	PRK09509, fieF, CDF family cation-efflux pump FieF	NA|140aa|down_9|NZ_HG916826.1_854757_855177_-	NA
GCF_000297075.2_Ppseudo_final	NZ_HG916826	Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344	4	4439046-4441655	4,4,3,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-F	ACTTCACTGCCGAGTAGGCAGCTCAGAAAA,CTTCACTGCCGTGTAGGCAGCTCAGAAA,CTTCACTGCCGNGTAGGCAGCTCAGAAA,CTTCACTGCCGAGTAGGCAGCTCAGAAA	30,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	21,43,43,21	43	TypeI-F	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA|102aa|up_8|NZ_HG916826.1_4429220_4429526_+,NA|141aa|up_4|NZ_HG916826.1_4434918_4435341_-,NA	NA|113aa|up_9|NZ_HG916826.1_4428811_4429150_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|102aa|up_8|NZ_HG916826.1_4429220_4429526_+	NA	NA|751aa|up_7|NZ_HG916826.1_4429684_4431937_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|532aa|up_6|NZ_HG916826.1_4431933_4433529_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|334aa|up_5|NZ_HG916826.1_4433654_4434656_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|141aa|up_4|NZ_HG916826.1_4434918_4435341_-	NA	NA|354aa|up_3|NZ_HG916826.1_4435465_4436527_+	pfam10023, Aminopep, Putative aminopeptidase	NA|77aa|up_2|NZ_HG916826.1_4436590_4436821_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|216aa|up_1|NZ_HG916826.1_4437099_4437747_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|324aa|up_0|NZ_HG916826.1_4437806_4438778_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	cas1|323aa|down_0|NZ_HG916826.1_4441709_4442678_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1117aa|down_1|NZ_HG916826.1_4442674_4446025_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|422aa|down_2|NZ_HG916826.1_4446156_4447422_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|114aa|down_3|NZ_HG916826.1_4447421_4447763_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|433aa|down_4|NZ_HG916826.1_4448053_4449352_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	cas8f|454aa|down_5|NZ_HG916826.1_4451106_4452468_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|334aa|down_6|NZ_HG916826.1_4452460_4453462_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|down_7|NZ_HG916826.1_4453467_4454487_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|188aa|down_8|NZ_HG916826.1_4454489_4455053_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|167aa|down_9|NZ_HG916826.1_4457357_4457858_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_000297075.2_Ppseudo_final	NZ_HG916826	Pseudomonas pseudoalcaligenes CECT 5344 strain CECT5344	5	4455183-4457250	6,5,4,7	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-F	GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	32,34,34,32	34	TypeI-F	PrimPol,RT,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA,NA	NA|324aa|up_9|NZ_HG916826.1_4437806_4438778_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	cas1|323aa|up_8|NZ_HG916826.1_4441709_4442678_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1117aa|up_7|NZ_HG916826.1_4442674_4446025_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|422aa|up_6|NZ_HG916826.1_4446156_4447422_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|114aa|up_5|NZ_HG916826.1_4447421_4447763_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|433aa|up_4|NZ_HG916826.1_4448053_4449352_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	cas8f|454aa|up_3|NZ_HG916826.1_4451106_4452468_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|334aa|up_2|NZ_HG916826.1_4452460_4453462_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|up_1|NZ_HG916826.1_4453467_4454487_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|188aa|up_0|NZ_HG916826.1_4454489_4455053_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|167aa|down_0|NZ_HG916826.1_4457357_4457858_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|181aa|down_1|NZ_HG916826.1_4457854_4458397_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|683aa|down_2|NZ_HG916826.1_4458526_4460575_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|98aa|down_3|NZ_HG916826.1_4460571_4460865_+	pfam09526, DUF2387, Probable metal-binding protein (DUF2387)	NA|264aa|down_4|NZ_HG916826.1_4460934_4461726_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|329aa|down_5|NZ_HG916826.1_4461807_4462794_+	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|354aa|down_6|NZ_HG916826.1_4462869_4463931_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|243aa|down_7|NZ_HG916826.1_4464297_4465026_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|101aa|down_8|NZ_HG916826.1_4465180_4465483_-	smart00938, P-II, Nitrogen regulatory protein P-II	NA|314aa|down_9|NZ_HG916826.1_4465484_4466426_-	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily
