assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	1	55513-56620	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Type III-B,Type III-C,Type III-A,Type III-D	GATCGATAACTACCCCGAATAACAGGGGACGAGAAT,GATCGATAACTACCCCGAATAACAGGGGACGAGAAT,GATCGATAACTACCCCGAATAACAGGGGACGAGAA	36,36,35	0	0	NA	NA	NA:NA:NA	15,15,11	15	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|663aa|up_9|NC_018608.1_45736_47725_+,NA|123aa|up_7|NC_018608.1_49021_49390_+,NA|74aa|up_1|NC_018608.1_54274_54496_+,NA|53aa|down_9|NC_018608.1_66317_66476_+	NA|663aa|up_9|NC_018608.1_45736_47725_+	NA	NA|370aa|up_8|NC_018608.1_47919_49029_+	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	NA|123aa|up_7|NC_018608.1_49021_49390_+	NA	NA|539aa|up_6|NC_018608.1_49389_51006_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|560aa|up_5|NC_018608.1_51230_52910_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|113aa|up_4|NC_018608.1_52998_53337_+	pfam06106, SAUGI, S	NA|104aa|up_3|NC_018608.1_53430_53742_+	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|168aa|up_2|NC_018608.1_53756_54260_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|up_1|NC_018608.1_54274_54496_+	NA	NA|104aa|up_0|NC_018608.1_54787_55099_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	cas1|302aa|down_0|NC_018608.1_56693_57599_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|down_1|NC_018608.1_57598_57904_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|down_2|NC_018608.1_57917_60191_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|down_3|NC_018608.1_60193_60619_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|down_4|NC_018608.1_60620_61265_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|down_5|NC_018608.1_61275_62184_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|down_6|NC_018608.1_62186_63209_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|down_7|NC_018608.1_63208_64477_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|down_8|NC_018608.1_64473_65208_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|53aa|down_9|NC_018608.1_66317_66476_+	NA
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	2	65343-65590	2,2	CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Type III-B,Type III-C,Type III-A,Type III-D	ATTCGATAACTACCCCGTAGAAGAGGGGACGAG,ATTCGATAACTACCNCCGTAGAAGAGGGGACGAG	33,34	0	0	NA	NA	NA:NA	3,3	3	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA,NA|53aa|down_0|NC_018608.1_66317_66476_+,NA|75aa|down_2|NC_018608.1_69219_69444_+,NA|208aa|down_4|NC_018608.1_71509_72133_+,NA|220aa|down_5|NC_018608.1_73419_74079_+,NA|124aa|down_7|NC_018608.1_75614_75986_-	NA|104aa|up_9|NC_018608.1_54787_55099_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	cas1|302aa|up_8|NC_018608.1_56693_57599_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|NC_018608.1_57598_57904_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_6|NC_018608.1_57917_60191_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|NC_018608.1_60193_60619_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|up_4|NC_018608.1_60620_61265_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_3|NC_018608.1_61275_62184_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|up_2|NC_018608.1_62186_63209_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|up_1|NC_018608.1_63208_64477_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|up_0|NC_018608.1_64473_65208_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|53aa|down_0|NC_018608.1_66317_66476_+	NA	NA|735aa|down_1|NC_018608.1_66784_68989_+	pfam13166, AAA_13, AAA domain	NA|75aa|down_2|NC_018608.1_69219_69444_+	NA	NA|215aa|down_3|NC_018608.1_70587_71232_+	PRK06526, PRK06526, transposase; Provisional	NA|208aa|down_4|NC_018608.1_71509_72133_+	NA	NA|220aa|down_5|NC_018608.1_73419_74079_+	NA	NA|324aa|down_6|NC_018608.1_74590_75562_-	pfam04909, Amidohydro_2, Amidohydrolase	NA|124aa|down_7|NC_018608.1_75614_75986_-	NA	NA|464aa|down_8|NC_018608.1_76005_77397_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|68aa|down_9|NC_018608.1_77510_77714_+	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	3	292880-293079	3	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	292911-292935|292967-292991	NC_018608.1_293080-293104|NC_018608.1_2133324-2133348	NA	3	3	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA,NA|131aa|down_5|NC_018608.1_298255_298648_+	NA|574aa|up_9|NC_018608.1_280326_282048_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NC_018608.1_282191_282866_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_7|NC_018608.1_283112_284867_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NC_018608.1_284869_285610_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NC_018608.1_285722_286166_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NC_018608.1_286158_286860_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NC_018608.1_287200_289492_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NC_018608.1_289717_290422_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NC_018608.1_290570_291362_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NC_018608.1_291377_292814_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NC_018608.1_293389_294151_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NC_018608.1_294402_295317_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NC_018608.1_295344_295749_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NC_018608.1_295763_296645_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NC_018608.1_296876_297875_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NC_018608.1_298255_298648_+	NA	NA|459aa|down_6|NC_018608.1_298776_300153_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NC_018608.1_300386_301379_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NC_018608.1_301704_302655_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NC_018608.1_302706_303366_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	4	702625-702733	4	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA,NA|169aa|down_4|NC_018608.1_706466_706973_+,NA|239aa|down_5|NC_018608.1_707134_707851_+	NA|209aa|up_9|NC_018608.1_692129_692756_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|NC_018608.1_693025_693964_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|NC_018608.1_694409_694946_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NC_018608.1_695115_695592_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NC_018608.1_695631_696927_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NC_018608.1_696954_697476_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NC_018608.1_697974_698985_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|NC_018608.1_699260_699677_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_018608.1_699673_701335_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_018608.1_701819_702455_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NC_018608.1_702784_703672_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_018608.1_703822_704773_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_018608.1_704827_705547_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_018608.1_705530_706331_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_018608.1_706466_706973_+	NA	NA|239aa|down_5|NC_018608.1_707134_707851_+	NA	NA|263aa|down_6|NC_018608.1_708019_708808_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NC_018608.1_709059_709434_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NC_018608.1_710381_711311_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NC_018608.1_711503_711728_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	5	864913-864995	5	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	22	864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969|864939-864969	NC_018608.1_959237-959207|NC_018608.1_998043-998073|NC_018608.1_1979145-1979175|NC_018608.1_1979255-1979285|NC_018608.1_2047511-2047541|NC_018608.1_274892-274922|NC_018608.1_274950-274980|NC_018608.1_275008-275038|NC_018608.1_414118-414088|NC_018608.1_694122-694092|NC_018608.1_818627-818597|NC_018608.1_909865-909895|NC_018608.1_1091010-1091040|NC_018608.1_1790900-1790870|NC_018608.1_1881678-1881648|NC_018608.1_2296745-2296775|NC_018608.1_2341759-2341729|NC_018608.1_873920-873950|NC_018608.1_914003-913973|NC_018608.1_1401253-1401283|NC_018608.1_1447343-1447373|NC_018608.1_2742811-2742841	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA,NA	NA|280aa|up_9|NC_018608.1_852162_853002_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NC_018608.1_853175_853826_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NC_018608.1_853822_854059_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NC_018608.1_854327_856313_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NC_018608.1_856320_859167_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NC_018608.1_859776_860709_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NC_018608.1_860714_861554_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NC_018608.1_861561_862047_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NC_018608.1_862054_863494_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NC_018608.1_863560_864496_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NC_018608.1_865263_866175_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NC_018608.1_866171_867167_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NC_018608.1_867275_868220_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NC_018608.1_868789_869377_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NC_018608.1_869559_871194_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NC_018608.1_871400_872303_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NC_018608.1_873005_873635_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|337aa|down_7|NC_018608.1_875478_876489_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NC_018608.1_876627_877818_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NC_018608.1_877939_878701_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	6	914272-914352	6	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	914297-914327	NC_018608.1_859366-859336	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA,NA|105aa|down_7|NC_018608.1_921961_922276_-	NA|239aa|up_9|NC_018608.1_905602_906319_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|107aa|up_8|NC_018608.1_907091_907412_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_018608.1_907555_907912_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_018608.1_908069_908450_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_5|NC_018608.1_908629_909508_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_4|NC_018608.1_910209_910596_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|NC_018608.1_910588_910885_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|NC_018608.1_911134_912160_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|NC_018608.1_912152_912848_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|NC_018608.1_912865_913687_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|NC_018608.1_914494_914689_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NC_018608.1_914922_915774_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NC_018608.1_916101_916863_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|435aa|down_3|NC_018608.1_916961_918266_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NC_018608.1_918377_919628_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NC_018608.1_919617_920082_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NC_018608.1_920232_921630_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|NC_018608.1_921961_922276_-	NA	NA|347aa|down_8|NC_018608.1_922644_923685_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|NC_018608.1_923698_924766_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	7	1191213-1191293	7	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	AGAATTTCGAATAGAAATTCTACA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|31aa|up_8|NC_018608.1_1184506_1184599_-,NA|169aa|up_6|NC_018608.1_1185633_1186140_+,NA|62aa|up_3|NC_018608.1_1187644_1187830_-,NA|78aa|up_2|NC_018608.1_1188439_1188673_-,NA|76aa|up_0|NC_018608.1_1190856_1191084_+,NA|76aa|down_6|NC_018608.1_1198282_1198510_+	NA|106aa|up_9|NC_018608.1_1183889_1184207_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_8|NC_018608.1_1184506_1184599_-	NA	NA|135aa|up_7|NC_018608.1_1184555_1184960_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_6|NC_018608.1_1185633_1186140_+	NA	NA|166aa|up_5|NC_018608.1_1186397_1186895_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_4|NC_018608.1_1187046_1187397_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_3|NC_018608.1_1187644_1187830_-	NA	NA|78aa|up_2|NC_018608.1_1188439_1188673_-	NA	NA|320aa|up_1|NC_018608.1_1189125_1190085_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|76aa|up_0|NC_018608.1_1190856_1191084_+	NA	NA|239aa|down_0|NC_018608.1_1191476_1192193_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NC_018608.1_1192301_1193027_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NC_018608.1_1193136_1193862_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NC_018608.1_1194291_1195293_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NC_018608.1_1195315_1196248_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NC_018608.1_1196418_1197975_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NC_018608.1_1198282_1198510_+	NA	NA|316aa|down_7|NC_018608.1_1198826_1199774_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NC_018608.1_1200021_1200210_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NC_018608.1_1201118_1201253_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	8	1793333-1793415	8	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA,NA	NA|454aa|up_9|NC_018608.1_1778166_1779528_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NC_018608.1_1779871_1781629_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NC_018608.1_1781650_1782619_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NC_018608.1_1782887_1783832_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NC_018608.1_1783831_1784689_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NC_018608.1_1784883_1786113_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NC_018608.1_1786561_1789759_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NC_018608.1_1789779_1790721_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NC_018608.1_1791090_1792389_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NC_018608.1_1792593_1793007_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NC_018608.1_1793512_1794202_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NC_018608.1_1794376_1795432_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NC_018608.1_1795747_1796866_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NC_018608.1_1797006_1797507_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NC_018608.1_1797753_1798956_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NC_018608.1_1799043_1799991_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NC_018608.1_1800113_1800608_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NC_018608.1_1800705_1801476_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NC_018608.1_1801519_1802743_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NC_018608.1_1802742_1803891_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	9	1881687-1881780	9	CRISPRCasFinder	no	csa3	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	34	1	1	1881721-1881746	NC_018608.1_1979217-1979192	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|75aa|up_5|NC_018608.1_1877780_1878005_-,NA|148aa|up_2|NC_018608.1_1879216_1879660_-,NA|101aa|down_1|NC_018608.1_1882914_1883217_+	NA|501aa|up_9|NC_018608.1_1872812_1874315_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NC_018608.1_1874957_1875272_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NC_018608.1_1875271_1876564_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NC_018608.1_1876650_1877505_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NC_018608.1_1877780_1878005_-	NA	NA|157aa|up_4|NC_018608.1_1878203_1878674_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NC_018608.1_1878786_1879230_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NC_018608.1_1879216_1879660_-	NA	NA|212aa|up_1|NC_018608.1_1879957_1880593_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NC_018608.1_1880759_1881380_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NC_018608.1_1881942_1882656_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NC_018608.1_1882914_1883217_+	NA	NA|122aa|down_2|NC_018608.1_1883471_1883837_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NC_018608.1_1883833_1884187_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NC_018608.1_1884436_1885270_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NC_018608.1_1885481_1886390_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NC_018608.1_1886514_1887708_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NC_018608.1_1888079_1889672_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NC_018608.1_1889968_1890715_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NC_018608.1_1890719_1891193_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	10	1945160-1945302	10	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	55	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|132aa|up_7|NC_018608.1_1937354_1937750_-,NA|51aa|up_6|NC_018608.1_1938292_1938445_-,NA	NA|274aa|up_9|NC_018608.1_1934497_1935319_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NC_018608.1_1935773_1937159_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NC_018608.1_1937354_1937750_-	NA	NA|51aa|up_6|NC_018608.1_1938292_1938445_-	NA	NA|200aa|up_5|NC_018608.1_1938469_1939069_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NC_018608.1_1939227_1939698_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|NC_018608.1_1939702_1940830_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_2|NC_018608.1_1940980_1941703_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NC_018608.1_1941695_1943153_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NC_018608.1_1943409_1944471_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NC_018608.1_1953124_1953571_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NC_018608.1_1953667_1954618_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NC_018608.1_1954623_1955079_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NC_018608.1_1955159_1956449_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NC_018608.1_1956741_1957836_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NC_018608.1_1958026_1959763_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NC_018608.1_1960053_1960596_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NC_018608.1_1960898_1961936_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NC_018608.1_1962087_1963065_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NC_018608.1_1963325_1964162_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	11	2122249-2122461	11	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|46aa|up_4|NC_018608.1_2119110_2119248_-,NA|107aa|down_0|NC_018608.1_2122494_2122815_+	NA|232aa|up_9|NC_018608.1_2111802_2112498_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|NC_018608.1_2112850_2114371_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|NC_018608.1_2114886_2116242_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|NC_018608.1_2116256_2117327_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|NC_018608.1_2117644_2118847_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|NC_018608.1_2119110_2119248_-	NA	NA|70aa|up_3|NC_018608.1_2119375_2119585_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|NC_018608.1_2119596_2119890_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|NC_018608.1_2120055_2121540_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|NC_018608.1_2121567_2122215_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|NC_018608.1_2122494_2122815_+	NA	NA|439aa|down_1|NC_018608.1_2122811_2124128_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|291aa|down_2|NC_018608.1_2124457_2125330_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_3|NC_018608.1_2125415_2126057_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_4|NC_018608.1_2126058_2126850_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_5|NC_018608.1_2126833_2127664_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_6|NC_018608.1_2127656_2128346_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_7|NC_018608.1_2128732_2129428_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_8|NC_018608.1_2129816_2130212_-	pfam00436, SSB, Single-strand binding protein family	NA|147aa|down_9|NC_018608.1_2130405_2130846_+	pfam14183, YwpF, YwpF-like protein
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	12	2177881-2178031	12	CRISPRCasFinder	no	csa3,TnsE_C	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|77aa|up_5|NC_018608.1_2172753_2172984_-,NA|364aa|up_0|NC_018608.1_2176771_2177863_+,NA|35aa|down_0|NC_018608.1_2178360_2178465_-,NA|53aa|down_1|NC_018608.1_2179144_2179303_+,NA|31aa|down_2|NC_018608.1_2179738_2179831_+	NA|237aa|up_9|NC_018608.1_2168363_2169074_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_018608.1_2169194_2169638_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_018608.1_2169837_2170251_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_018608.1_2170708_2172082_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_018608.1_2172753_2172984_-	NA	NA|313aa|up_4|NC_018608.1_2173014_2173953_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_018608.1_2174386_2175052_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_018608.1_2175203_2175524_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_018608.1_2175525_2176506_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_018608.1_2176771_2177863_+	NA	NA|35aa|down_0|NC_018608.1_2178360_2178465_-	NA	NA|53aa|down_1|NC_018608.1_2179144_2179303_+	NA	NA|31aa|down_2|NC_018608.1_2179738_2179831_+	NA	NA|286aa|down_3|NC_018608.1_2179960_2180818_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_018608.1_2180885_2181668_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_5|NC_018608.1_2181957_2182566_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_6|NC_018608.1_2182593_2183628_-	pfam13676, TIR_2, TIR domain	NA|490aa|down_7|NC_018608.1_2183721_2185191_-	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|97aa|down_8|NC_018608.1_2185250_2185541_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	TnsE_C|135aa|down_9|NC_018608.1_2185665_2186070_-	pfam18623, TnsE_C, TnsE C-terminal domain
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	13	2341811-2341896	13	CRISPRCasFinder	no	WYL	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	2341841-2341866|2341841-2341866|2341841-2341866|2341841-2341866|2341841-2341866|2341841-2341866|2341841-2341866	NC_018608.1_1665434-1665409|NC_018608.1_909954-909929|NC_018608.1_914074-914099|NC_018608.1_959012-959037|NC_018608.1_1396924-1396949|NC_018608.1_2133362-2133387|NC_018608.1_2473763-2473738	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|65aa|up_6|NC_018608.1_2334555_2334750_-,NA|78aa|down_1|NC_018608.1_2342846_2343080_-,NA|110aa|down_8|NC_018608.1_2351168_2351498_+	NA|248aa|up_9|NC_018608.1_2330343_2331087_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|652aa|up_8|NC_018608.1_2331112_2333068_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_7|NC_018608.1_2333677_2334487_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_6|NC_018608.1_2334555_2334750_-	NA	NA|467aa|up_5|NC_018608.1_2334923_2336324_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_4|NC_018608.1_2336418_2337501_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_3|NC_018608.1_2337748_2338171_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|up_2|NC_018608.1_2338407_2338908_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|318aa|up_1|NC_018608.1_2339270_2340224_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_0|NC_018608.1_2340315_2341440_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|259aa|down_0|NC_018608.1_2342048_2342825_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|NC_018608.1_2342846_2343080_-	NA	NA|158aa|down_2|NC_018608.1_2343374_2343848_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|NC_018608.1_2343847_2346802_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|316aa|down_4|NC_018608.1_2347403_2348351_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|NC_018608.1_2348483_2349281_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|NC_018608.1_2349665_2350358_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|NC_018608.1_2350382_2351120_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|NC_018608.1_2351168_2351498_+	NA	NA|291aa|down_9|NC_018608.1_2351942_2352815_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	14	2518017-2518111	14	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	AGGCTCTTATGCAGTTGGTGCGAAGCAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|249aa|up_9|NC_018608.1_2507602_2508349_+,NA|121aa|down_0|NC_018608.1_2518779_2519142_-,NA|105aa|down_8|NC_018608.1_2525954_2526269_+	NA|249aa|up_9|NC_018608.1_2507602_2508349_+	NA	NA|398aa|up_8|NC_018608.1_2508572_2509766_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|NC_018608.1_2509777_2510527_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|NC_018608.1_2510519_2511335_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|NC_018608.1_2511331_2512201_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|NC_018608.1_2512197_2513133_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|NC_018608.1_2513145_2514744_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|NC_018608.1_2514886_2516188_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|NC_018608.1_2516180_2516999_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|NC_018608.1_2517009_2517831_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|NC_018608.1_2518779_2519142_-	NA	NA|273aa|down_1|NC_018608.1_2519404_2520223_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|NC_018608.1_2520456_2521995_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|NC_018608.1_2522106_2522529_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_4|NC_018608.1_2523000_2523399_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|down_5|NC_018608.1_2523425_2523836_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|128aa|down_6|NC_018608.1_2524290_2524674_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|403aa|down_7|NC_018608.1_2524740_2525949_+	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|105aa|down_8|NC_018608.1_2525954_2526269_+	NA	NA|140aa|down_9|NC_018608.1_2528145_2528565_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)
GCF_000296595.1_ASM29659v1	NC_018608	Staphylococcus aureus 08BA02176, complete sequence	15	2545963-2546073	15	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	Orphan	GGTACTTCTGGTGTCGGTGGCGTTGGT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas3,DEDDh,DinG,csa3,TnsE_C	NA|89aa|up_2|NC_018608.1_2540266_2540533_+,NA|103aa|up_1|NC_018608.1_2540676_2540985_+,NA	NA|452aa|up_9|NC_018608.1_2531659_2533015_-	cd00519, Lipase_3, Lipase (class 3)	NA|262aa|up_8|NC_018608.1_2533011_2533797_-	pfam04507, DUF576, Csa1 family	NA|255aa|up_7|NC_018608.1_2534044_2534809_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_6|NC_018608.1_2534920_2535694_-	pfam04507, DUF576, Csa1 family	NA|310aa|up_5|NC_018608.1_2535936_2536866_-	pfam09019, EcoRII-C, EcoRII C terminal	NA|398aa|up_4|NC_018608.1_2536961_2538155_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|597aa|up_3|NC_018608.1_2538192_2539983_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|89aa|up_2|NC_018608.1_2540266_2540533_+	NA	NA|103aa|up_1|NC_018608.1_2540676_2540985_+	NA	NA|289aa|up_0|NC_018608.1_2541110_2541977_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|453aa|down_0|NC_018608.1_2549213_2550572_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|518aa|down_1|NC_018608.1_2550688_2552242_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|226aa|down_2|NC_018608.1_2552266_2552944_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|255aa|down_3|NC_018608.1_2553100_2553865_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|231aa|down_4|NC_018608.1_2554029_2554722_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|139aa|down_5|NC_018608.1_2554952_2555369_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|608aa|down_6|NC_018608.1_2555507_2557331_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|426aa|down_7|NC_018608.1_2558242_2559520_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|204aa|down_8|NC_018608.1_2560066_2560678_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|388aa|down_9|NC_018608.1_2560775_2561939_-	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily
