assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000296575.1_ASM29657v1	NC_018607	Brachyspira pilosicoli B2904, complete sequence	1	154888-154964	1	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	ATTACAGACACAAATAAAAATAATAT	26	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|152aa|up_9|NC_018607.1_148029_148485_+,NA|188aa|up_8|NC_018607.1_148497_149061_+,NA|85aa|up_7|NC_018607.1_149006_149261_+,NA|196aa|up_6|NC_018607.1_149274_149862_+,NA|107aa|up_5|NC_018607.1_149858_150179_+,NA|364aa|up_4|NC_018607.1_150819_151911_+,NA|205aa|up_3|NC_018607.1_151959_152574_-,NA|197aa|up_2|NC_018607.1_152585_153176_-,NA|122aa|down_0|NC_018607.1_155140_155506_+,NA|114aa|down_1|NC_018607.1_155508_155850_+,NA|204aa|down_3|NC_018607.1_157139_157751_+,NA|390aa|down_4|NC_018607.1_157753_158923_+,NA|199aa|down_5|NC_018607.1_158924_159521_+,NA|86aa|down_6|NC_018607.1_159527_159785_-,NA|91aa|down_7|NC_018607.1_159794_160067_-,NA|163aa|down_8|NC_018607.1_160071_160560_-	NA|152aa|up_9|NC_018607.1_148029_148485_+	NA	NA|188aa|up_8|NC_018607.1_148497_149061_+	NA	NA|85aa|up_7|NC_018607.1_149006_149261_+	NA	NA|196aa|up_6|NC_018607.1_149274_149862_+	NA	NA|107aa|up_5|NC_018607.1_149858_150179_+	NA	NA|364aa|up_4|NC_018607.1_150819_151911_+	NA	NA|205aa|up_3|NC_018607.1_151959_152574_-	NA	NA|197aa|up_2|NC_018607.1_152585_153176_-	NA	NA|174aa|up_1|NC_018607.1_153422_153944_+	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|116aa|up_0|NC_018607.1_153979_154327_+	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|122aa|down_0|NC_018607.1_155140_155506_+	NA	NA|114aa|down_1|NC_018607.1_155508_155850_+	NA	NA|406aa|down_2|NC_018607.1_155925_157143_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|204aa|down_3|NC_018607.1_157139_157751_+	NA	NA|390aa|down_4|NC_018607.1_157753_158923_+	NA	NA|199aa|down_5|NC_018607.1_158924_159521_+	NA	NA|86aa|down_6|NC_018607.1_159527_159785_-	NA	NA|91aa|down_7|NC_018607.1_159794_160067_-	NA	NA|163aa|down_8|NC_018607.1_160071_160560_-	NA	NA|70aa|down_9|NC_018607.1_160556_160766_-	COG2433, COG2433, Uncharacterized conserved protein [Function unknown]
GCF_000296575.1_ASM29657v1	NC_018607	Brachyspira pilosicoli B2904, complete sequence	2	456722-456930	1	PILER-CR	no		cas4,DinG,csa3	Orphan	TTTTTTATTTTTTTAACTGCTTTTTTTACTTCTTTTTTAACAGT	44	0	0	NA	NA	NA	2	2	Orphan	cas4,DinG,csa3	NA|227aa|up_7|NC_018607.1_443650_444331_+,NA|352aa|up_6|NC_018607.1_444804_445860_+,NA|189aa|up_5|NC_018607.1_446114_446681_-,NA	NA|224aa|up_9|NC_018607.1_441491_442163_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|406aa|up_8|NC_018607.1_442440_443658_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|227aa|up_7|NC_018607.1_443650_444331_+	NA	NA|352aa|up_6|NC_018607.1_444804_445860_+	NA	NA|189aa|up_5|NC_018607.1_446114_446681_-	NA	NA|454aa|up_4|NC_018607.1_446771_448133_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|327aa|up_3|NC_018607.1_448260_449241_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|344aa|up_2|NC_018607.1_449260_450292_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|965aa|up_1|NC_018607.1_452109_455004_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|276aa|up_0|NC_018607.1_455456_456284_-	cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase of Hisj like	NA|254aa|down_0|NC_018607.1_460062_460824_+	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases	NA|151aa|down_1|NC_018607.1_460839_461292_+	cd14498, DSP, dual-specificity phosphatase domain	NA|219aa|down_2|NC_018607.1_461347_462004_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|543aa|down_3|NC_018607.1_462028_463657_+	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|285aa|down_4|NC_018607.1_463668_464523_+	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|209aa|down_5|NC_018607.1_464561_465188_+	pfam00302, CAT, Chloramphenicol acetyltransferase	NA|251aa|down_6|NC_018607.1_466803_467556_-	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|313aa|down_7|NC_018607.1_467684_468623_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|216aa|down_8|NC_018607.1_468652_469300_+	sd00037, PASTA, PASTA domain	NA|267aa|down_9|NC_018607.1_469406_470207_+	pfam13489, Methyltransf_23, Methyltransferase domain
GCF_000296575.1_ASM29657v1	NC_018607	Brachyspira pilosicoli B2904, complete sequence	3	1042841-1042954	2	CRISPRCasFinder	no		cas4,DinG,csa3	Orphan	TCACTAGCTTATTATATGCGAAGGCGAACATAGCAATAA	39	0	0	NA	NA	NA	1	1	Orphan	cas4,DinG,csa3	NA|226aa|up_9|NC_018607.1_1029871_1030549_+,NA|179aa|up_1|NC_018607.1_1039437_1039974_-,NA|69aa|down_1|NC_018607.1_1043974_1044181_+	NA|226aa|up_9|NC_018607.1_1029871_1030549_+	NA	NA|188aa|up_8|NC_018607.1_1030588_1031152_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|367aa|up_7|NC_018607.1_1031163_1032264_+	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|579aa|up_6|NC_018607.1_1032543_1034280_+	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|144aa|up_5|NC_018607.1_1034295_1034727_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|357aa|up_4|NC_018607.1_1034733_1035804_-	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family	NA|293aa|up_3|NC_018607.1_1035813_1036692_-	COG1655, COG1655, Uncharacterized protein conserved in bacteria [Function unknown]	NA|886aa|up_2|NC_018607.1_1036755_1039413_-	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|179aa|up_1|NC_018607.1_1039437_1039974_-	NA	NA|876aa|up_0|NC_018607.1_1040115_1042743_+	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase	NA|269aa|down_0|NC_018607.1_1042965_1043772_+	COG1410, MetH, Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]	NA|69aa|down_1|NC_018607.1_1043974_1044181_+	NA	NA|308aa|down_2|NC_018607.1_1044281_1045205_-	cd00537, MTHFR, Methylenetetrahydrofolate reductase (MTHFR)	NA|271aa|down_3|NC_018607.1_1045242_1046055_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|213aa|down_4|NC_018607.1_1046058_1046697_-	PRK13306, ulaD, 3-dehydro-L-gulonate-6-phosphate decarboxylase	NA|232aa|down_5|NC_018607.1_1046723_1047419_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|285aa|down_6|NC_018607.1_1047422_1048277_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|103aa|down_7|NC_018607.1_1048349_1048658_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|489aa|down_8|NC_018607.1_1048679_1050146_-	PRK12997, PRK12997, PTS sugar transporter subunit IIC	NA|144aa|down_9|NC_018607.1_1051272_1051704_-	PRK09854, cmtB, PTS mannitol transporter subunit IIA
GCF_000296575.1_ASM29657v1	NC_018607	Brachyspira pilosicoli B2904, complete sequence	4	1440047-1440194	2	PILER-CR	no		cas4,DinG,csa3	Orphan	TTCAAGTTTTTTATATTTTTCTAATTTCTTTTTT	34	0	0	NA	NA	NA	2	2	Orphan	cas4,DinG,csa3	NA|913aa|up_0|NC_018607.1_1435475_1438214_-,NA|19aa|down_0|NC_018607.1_1440527_1440584_+,NA|59aa|down_1|NC_018607.1_1441293_1441470_-,NA|189aa|down_8|NC_018607.1_1448325_1448892_-	NA|696aa|up_9|NC_018607.1_1423492_1425580_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]	NA|671aa|up_8|NC_018607.1_1427092_1429105_+	pfam16314, DUF4954, Domain of unknown function (DUF4954)	NA|285aa|up_7|NC_018607.1_1429110_1429965_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|333aa|up_6|NC_018607.1_1429969_1430968_-	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate	NA|121aa|up_5|NC_018607.1_1430967_1431330_-	cd17554, REC_TrrA-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator TrrA and similar domains	NA|263aa|up_4|NC_018607.1_1431451_1432240_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|145aa|up_3|NC_018607.1_1432239_1432674_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|655aa|up_2|NC_018607.1_1432688_1434653_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|254aa|up_1|NC_018607.1_1434680_1435442_-	TIGR00502, Glucosamine-6-phosphate_deaminase, glucosamine-6-phosphate isomerase	NA|913aa|up_0|NC_018607.1_1435475_1438214_-	NA	NA|19aa|down_0|NC_018607.1_1440527_1440584_+	NA	NA|59aa|down_1|NC_018607.1_1441293_1441470_-	NA	NA|397aa|down_2|NC_018607.1_1441948_1443139_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|73aa|down_3|NC_018607.1_1443423_1443642_-	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|191aa|down_4|NC_018607.1_1444775_1445348_-	TIGR03527, selenium_YedF, selenium metabolism protein YedF	NA|137aa|down_5|NC_018607.1_1445382_1445793_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|258aa|down_6|NC_018607.1_1445817_1446591_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|456aa|down_7|NC_018607.1_1446714_1448082_-	TIGR03990, Arch_GlmM, phosphoglucosamine mutase	NA|189aa|down_8|NC_018607.1_1448325_1448892_-	NA	NA|360aa|down_9|NC_018607.1_1449232_1450312_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit
