The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013949	Bradyrhizobium sp. CCGE-LA001 chromosome, complete genome	7833499	942181	949335	7833499		Salmonella_phage(16.67%)	6	NA	NA
WP_008543131.1|942181_942646_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	57.6	1.4e-44
WP_008543132.1|942805_943291_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	3.4e-20
WP_008543133.1|943400_943955_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	32.7	7.1e-14
WP_008543135.1|943970_945656_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.4	3.4e-43
WP_060734724.1|945843_947349_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.1	4.7e-28
WP_060737486.1|947538_949335_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.2	1.0e-32
>prophage 2
NZ_CP013949	Bradyrhizobium sp. CCGE-LA001 chromosome, complete genome	7833499	2809672	2816940	7833499		Escherichia_phage(50.0%)	7	NA	NA
WP_060735478.1|2809672_2810404_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.7	9.7e-11
WP_060735479.1|2810387_2811092_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	4.9e-12
WP_060735480.1|2811312_2811987_-	aldolase	NA	A0A077SK32	Escherichia_phage	48.3	5.9e-47
WP_060735481.1|2812093_2813011_+	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.5	7.8e-66
WP_008550124.1|2813025_2813808_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_060735482.1|2813804_2815082_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	41.4	1.7e-71
WP_060735483.1|2815251_2816940_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.1	5.2e-15
>prophage 3
NZ_CP013949	Bradyrhizobium sp. CCGE-LA001 chromosome, complete genome	7833499	4360783	4369816	7833499	tRNA	uncultured_Mediterranean_phage(87.5%)	11	NA	NA
WP_060736145.1|4360783_4362172_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	41.8	1.1e-18
WP_144441383.1|4362281_4362932_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	3.8e-27
WP_008547195.1|4363161_4363533_+	response regulator	NA	NA	NA	NA	NA
WP_060736146.1|4363536_4364304_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.0	5.4e-36
WP_060736147.1|4364394_4364757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060736148.1|4364874_4366206_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.3e-98
WP_008547207.1|4366404_4367217_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	47.2	4.6e-54
WP_008547209.1|4367213_4367708_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_008547211.1|4367797_4368034_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	7.2e-08
WP_008547212.1|4368200_4368956_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.1	6.9e-44
WP_060736149.1|4368976_4369816_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	4.3e-31
