assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000294365.1_ASM29436v1	NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	1	2319792-2320306	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas1,cas2	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,8,8	8	TypeI-E	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	NA,NA	NA|131aa|up_9|NC_018522.1_2306291_2306684_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NC_018522.1_2306720_2307953_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NC_018522.1_2308518_2308953_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NC_018522.1_2309069_2310269_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|54aa|up_5|NC_018522.1_2311560_2311722_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NC_018522.1_2311764_2313915_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NC_018522.1_2314162_2315242_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NC_018522.1_2315544_2316633_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NC_018522.1_2316706_2318476_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NC_018522.1_2318468_2319539_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NC_018522.1_2320719_2323335_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NC_018522.1_2323338_2324862_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NC_018522.1_2324873_2325440_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NC_018522.1_2325432_2326080_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NC_018522.1_2326109_2327144_+	pfam09344, Cas_CT1975, CT1975-like protein	cas1|292aa|down_5|NC_018522.1_2327873_2328749_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_6|NC_018522.1_2328726_2329014_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_7|NC_018522.1_2330181_2331297_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_8|NC_018522.1_2331307_2331991_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_9|NC_018522.1_2332051_2332423_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000294365.1_ASM29436v1	NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	2	2329062-2329943	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas1,cas2	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	14,14,14	14	TypeI-E	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	NA,NA	NA|363aa|up_9|NC_018522.1_2315544_2316633_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_8|NC_018522.1_2316706_2318476_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_7|NC_018522.1_2318468_2319539_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_6|NC_018522.1_2320719_2323335_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_5|NC_018522.1_2323338_2324862_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_4|NC_018522.1_2324873_2325440_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_3|NC_018522.1_2325432_2326080_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_2|NC_018522.1_2326109_2327144_+	pfam09344, Cas_CT1975, CT1975-like protein	cas1|292aa|up_1|NC_018522.1_2327873_2328749_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NC_018522.1_2328726_2329014_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NC_018522.1_2330181_2331297_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|NC_018522.1_2331307_2331991_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NC_018522.1_2332051_2332423_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_3|NC_018522.1_2332924_2333680_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NC_018522.1_2333682_2335467_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|447aa|down_5|NC_018522.1_2335477_2336818_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NC_018522.1_2336901_2337525_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NC_018522.1_2337521_2338181_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NC_018522.1_2338230_2338968_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NC_018522.1_2338964_2339195_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_000294365.1_ASM29436v1	NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	3	2398121-2398245	3	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTAC	44	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	NA|191aa|up_8|NC_018522.1_2390388_2390961_-,NA|50aa|up_6|NC_018522.1_2391987_2392137_+,NA|172aa|up_4|NC_018522.1_2393068_2393584_-,NA|84aa|up_0|NC_018522.1_2397432_2397684_+,NA	NA|68aa|up_9|NC_018522.1_2390095_2390299_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|191aa|up_8|NC_018522.1_2390388_2390961_-	NA	NA|145aa|up_7|NC_018522.1_2391151_2391586_-	pfam00486, Trans_reg_C, Transcriptional regulatory protein, C terminal	NA|50aa|up_6|NC_018522.1_2391987_2392137_+	NA	NA|279aa|up_5|NC_018522.1_2392224_2393061_-	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|172aa|up_4|NC_018522.1_2393068_2393584_-	NA	NA|295aa|up_3|NC_018522.1_2393740_2394625_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|309aa|up_2|NC_018522.1_2394621_2395548_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|251aa|up_1|NC_018522.1_2395646_2396399_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|84aa|up_0|NC_018522.1_2397432_2397684_+	NA	NA|193aa|down_0|NC_018522.1_2398505_2399084_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|136aa|down_1|NC_018522.1_2399223_2399631_-	PRK10811, rne, ribonuclease E; Reviewed	NA|458aa|down_2|NC_018522.1_2399806_2401180_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|212aa|down_3|NC_018522.1_2401409_2402045_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_4|NC_018522.1_2402082_2403231_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|394aa|down_5|NC_018522.1_2403523_2404705_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|335aa|down_6|NC_018522.1_2404817_2405822_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_7|NC_018522.1_2405748_2406774_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_8|NC_018522.1_2407069_2407159_+	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated	NA|389aa|down_9|NC_018522.1_2407325_2408492_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_000294365.1_ASM29436v1	NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	4	4288830-4288969	4	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	Unclear	TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas1,cas2,WYL	NA,NA	NA|428aa|up_9|NC_018522.1_4278579_4279863_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NC_018522.1_4279998_4281399_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NC_018522.1_4281444_4282137_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NC_018522.1_4282222_4282621_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NC_018522.1_4282678_4283923_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NC_018522.1_4284027_4284486_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NC_018522.1_4284743_4286201_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NC_018522.1_4286243_4286696_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NC_018522.1_4286698_4287754_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NC_018522.1_4287913_4288774_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NC_018522.1_4288996_4289212_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NC_018522.1_4289214_4290438_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NC_018522.1_4290450_4291047_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NC_018522.1_4291053_4291692_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NC_018522.1_4291684_4292479_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NC_018522.1_4292471_4293710_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NC_018522.1_4293713_4295057_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NC_018522.1_4295468_4296209_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NC_018522.1_4296179_4296947_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NC_018522.1_4297021_4297603_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
