The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	5386705	1638166	1645071	5386705	tRNA	Planktothrix_phage(33.33%)	6	NA	NA
WP_004180551.1|1638166_1639030_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
WP_004180550.1|1639040_1639814_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
WP_004151134.1|1640054_1640951_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
WP_004144192.1|1641193_1642555_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	94.8	1.8e-207
WP_004175198.1|1642873_1643596_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
WP_004149058.1|1643592_1645071_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
>prophage 2
NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	5386705	2778719	2789606	5386705		Escherichia_phage(87.5%)	9	NA	NA
WP_014907638.1|2778719_2781827_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
WP_014907639.1|2781881_2783147_+	MFS transporter	NA	NA	NA	NA	NA
WP_014907640.1|2783177_2784266_-	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	99.7	1.0e-210
WP_014907641.1|2784352_2784613_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	2.1e-40
WP_004176269.1|2784910_2785771_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_002210513.1|2785791_2786553_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_002903955.1|2786813_2787716_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
WP_004224682.1|2787727_2788993_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.8	7.8e-234
WP_002210516.1|2788985_2789606_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 3
NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	5386705	2947318	3001259	5386705	tRNA,transposase,plate	Escherichia_phage(25.0%)	45	NA	NA
WP_002902422.1|2947318_2948254_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	93.0	3.5e-138
WP_014907694.1|2948299_2949673_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.7	6.2e-51
WP_004148192.1|2950197_2951181_-	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_014907695.1|2951460_2952204_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.0	1.3e-15
WP_014907696.1|2952166_2953285_+	oxidoreductase	NA	NA	NA	NA	NA
WP_004176404.1|2953521_2953716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014907697.1|2953828_2954575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014907698.1|2954825_2956205_-	amino acid permease	NA	NA	NA	NA	NA
WP_002902405.1|2956539_2957019_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004176405.1|2957270_2957885_+	YitT family protein	NA	NA	NA	NA	NA
WP_014907699.1|2957923_2959123_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_014907700.1|2959151_2959820_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014907701.1|2959812_2960826_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.3	2.9e-29
WP_014907702.1|2960834_2961641_-	methionine-binding protein	NA	NA	NA	NA	NA
WP_014907703.1|2961861_2963037_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_014907704.1|2963081_2964116_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_004179582.1|2964204_2964753_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014907705.1|2964809_2965721_-	NmrA/HSCARG family protein	NA	NA	NA	NA	NA
WP_014907706.1|2965713_2966583_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076978328.1|2967279_2967594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004190483.1|2967613_2968519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014907708.1|2968657_2969587_+	aromatic alcohol reductase	NA	NA	NA	NA	NA
WP_004212334.1|2969612_2969819_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_014907709.1|2969869_2970748_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004151596.1|2970906_2971662_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014907710.1|2971666_2972260_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014907711.1|2972333_2973047_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014907712.1|2973113_2973608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004176417.1|2973734_2974277_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_004190503.1|2974254_2975340_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_014907713.1|2975303_2977058_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_014907714.1|2977598_2978654_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_014907715.1|2978684_2980283_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_049127998.1|2980282_2983738_-	type VI secretion protein VasK	NA	NA	NA	NA	NA
WP_032430730.1|2983734_2984943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014907718.1|2986210_2987281_-	TIGR02594 family protein	NA	B5SP49	Lactococcus_phage	33.3	2.5e-07
WP_086074293.1|2987267_2988062_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	30.4	1.9e-07
WP_015874727.1|2988112_2988304_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_015874726.1|2988275_2988380_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_041168969.1|2991420_2994120_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.6	8.5e-20
WP_014907724.1|2994112_2996767_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	33.4	8.5e-97
WP_002902160.1|2997030_2997522_-	type VI secretion system effector Hcp	NA	NA	NA	NA	NA
WP_014907726.1|2997526_2999233_-	OmpA family protein	NA	NA	NA	NA	NA
WP_004176431.1|2999229_2999919_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_004224345.1|2999915_3001259_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 4
NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	5386705	3179691	3276316	5386705	integrase,portal,terminase,capsid,head,tail,transposase,tRNA,holin	Klebsiella_phage(47.62%)	99	3170317:3170334	3284464:3284481
3170317:3170334	attL	ACGCCAAACCCCACCGTC	NA	NA	NA	NA
WP_002901088.1|3179691_3180192_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_002901080.1|3180309_3180756_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
WP_004140469.1|3180739_3181534_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014907798.1|3181641_3182817_+	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_014907799.1|3182848_3183541_-	CTP synthase	NA	NA	NA	NA	NA
WP_004150778.1|3183686_3184196_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_014343000.1|3184200_3184539_+	DUF488 family protein	NA	NA	NA	NA	NA
WP_004176548.1|3184528_3184768_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
WP_004176549.1|3185068_3186082_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.9e-12
WP_004150782.1|3186139_3186241_+	YoaK family small membrane protein	NA	NA	NA	NA	NA
WP_004213093.1|3186240_3186315_+	protein YoaJ	NA	NA	NA	NA	NA
WP_004140488.1|3186432_3186558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004140489.1|3186616_3186880_-	DUF2534 family protein	NA	NA	NA	NA	NA
WP_004150783.1|3187010_3187649_-	leucine efflux protein LeuE	NA	NA	NA	NA	NA
WP_004148038.1|3187738_3188653_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
WP_014907800.1|3189314_3190358_-	type II asparaginase	NA	NA	NA	NA	NA
WP_004140494.1|3190660_3191869_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_014907801.1|3191942_3193727_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
WP_004150788.1|3193733_3194624_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004140497.1|3194744_3196253_+	UbiD family decarboxylase	NA	NA	NA	NA	NA
WP_020804938.1|3196286_3196451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004150790.1|3196563_3197250_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_004140501.1|3197647_3197827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150791.1|3197866_3198499_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_004140506.1|3199065_3199263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014907802.1|3199378_3200389_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_004140511.1|3200385_3201792_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004140512.1|3201847_3202735_-	manganese catalase family protein	NA	NA	NA	NA	NA
WP_004140514.1|3202751_3203258_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004148027.1|3203284_3203779_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004150795.1|3203869_3204055_-	general stress protein	NA	NA	NA	NA	NA
WP_041168974.1|3204274_3204463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004140529.1|3204678_3205872_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_004140530.1|3205984_3206212_+	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
WP_032415655.1|3206365_3206542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014907803.1|3206661_3206985_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_004150798.1|3206977_3207370_+	amino acid-binding protein	NA	NA	NA	NA	NA
WP_004213085.1|3207366_3208080_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004892953.1|3208351_3208504_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
WP_014907806.1|3211679_3213107_-|tail	tail fiber domain-containing protein	tail	A0A0P0IDN1	Klebsiella_phage	55.5	3.0e-101
WP_014907807.1|3213175_3225880_-	DUF1983 domain-containing protein	NA	Q6UAW1	Klebsiella_phage	47.0	0.0e+00
WP_014228919.1|3225941_3226553_-|tail	tail assembly protein	tail	Q6UAW2	Klebsiella_phage	72.5	5.3e-71
WP_021462612.1|3226568_3226919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014228918.1|3226950_3227661_-	C40 family peptidase	NA	Q6UAW4	Klebsiella_phage	89.8	1.4e-136
WP_014907809.1|3227662_3228418_-|tail	phage minor tail protein L	tail	Q6UAW5	Klebsiella_phage	81.3	1.2e-125
WP_014228916.1|3228414_3228753_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	89.3	8.3e-58
WP_041169041.1|3228752_3232088_-|tail	phage tail tape measure protein	tail	Q6UAW7	Klebsiella_phage	87.6	0.0e+00
WP_014228914.1|3232320_3232686_-|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
WP_014228913.1|3232743_3233205_-|tail	major tail shaft subunit	tail	Q6UAX0	Klebsiella_phage	83.7	7.8e-67
WP_017898997.1|3233236_3233638_-	HK97 gp10 family phage protein	NA	Q6UAX1	Klebsiella_phage	94.0	1.7e-62
WP_014907812.1|3233634_3234024_-	hypothetical protein	NA	Q6UAX2	Klebsiella_phage	85.3	1.1e-56
WP_014228910.1|3234004_3234343_-|head,tail	head-tail adaptor protein	head,tail	Q6UAX3	Klebsiella_phage	91.1	5.6e-54
WP_041168975.1|3234339_3234657_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	88.8	2.6e-45
WP_014907814.1|3234637_3234898_-	hypothetical protein	NA	Q6UAX5	Klebsiella_phage	63.9	1.5e-22
WP_014228907.1|3234956_3236243_-|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	89.3	4.4e-216
WP_014907815.1|3236320_3237241_-	S49 family peptidase	NA	Q6UAX7	Klebsiella_phage	88.2	9.6e-149
WP_012542166.1|3237277_3238537_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	90.2	2.8e-223
WP_032418045.1|3238536_3238716_-	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	57.6	4.0e-11
WP_012542167.1|3238709_3240431_-|terminase	terminase large subunit	terminase	Q7Y413	Yersinia_phage	57.4	1.1e-190
WP_012542168.1|3240430_3240865_-|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	61.9	9.4e-30
WP_014907818.1|3241113_3241545_-	hypothetical protein	NA	Q6UAS0	Klebsiella_phage	61.6	1.8e-41
WP_014907819.1|3241541_3241865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041168976.1|3241816_3242179_-	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	82.5	1.3e-56
WP_162838183.1|3242162_3242327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032749552.1|3242505_3242730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065888617.1|3242768_3243206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041168977.1|3244154_3244505_-	hypothetical protein	NA	A0A0K2FIW3	Enterobacter_phage	37.7	6.0e-11
WP_023159886.1|3244501_3244999_-	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	86.4	4.3e-79
WP_021462597.1|3244998_3245214_-|holin	class II holin family protein	holin	A5LH82	Enterobacteria_phage	87.3	1.0e-29
WP_020317678.1|3246669_3247539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014228895.1|3247567_3247912_-	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	85.0	1.0e-55
WP_014907821.1|3247924_3248956_-	DUF968 domain-containing protein	NA	S5MW46	Escherichia_phage	49.3	1.8e-95
WP_051017642.1|3249155_3249548_-	DNA-binding protein	NA	K7PHB4	Enterobacterial_phage	36.6	6.1e-12
WP_071599446.1|3249588_3249828_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	58.6	1.5e-16
WP_012542186.1|3249890_3250124_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.1	1.7e-25
WP_004178082.1|3250202_3251690_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_014907823.1|3254391_3256155_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_021462584.1|3256467_3256908_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_041169042.1|3256921_3257386_-	hypothetical protein	NA	A0A0U2JGJ0	Escherichia_phage	68.9	1.9e-60
WP_014907826.1|3258412_3258967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012542199.1|3258969_3259185_-	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	57.5	2.0e-17
WP_012542200.1|3259286_3259676_+	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	60.2	6.7e-35
WP_021462581.1|3260518_3260713_+	DUF1482 family protein	NA	NA	NA	NA	NA
WP_021462580.1|3260755_3261100_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_014907830.1|3261241_3263380_+	exonuclease	NA	S4TNL0	Salmonella_phage	42.9	3.3e-99
WP_012542206.1|3263432_3263678_+	excisionase	NA	NA	NA	NA	NA
WP_014907831.1|3263658_3264786_+|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	O21925	Phage_21	58.1	1.7e-118
WP_004150800.1|3264903_3266154_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
WP_004150801.1|3266394_3267045_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_004150802.1|3267061_3267520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_004150803.1|3267576_3268683_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_014907832.1|3268737_3269379_+	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_004176557.1|3269382_3270753_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	1.2e-107
WP_004213084.1|3270807_3271170_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_004179353.1|3271253_3272060_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004150807.1|3272342_3273014_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_015874641.1|3273013_3274480_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_004176560.1|3274565_3275687_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_014907834.1|3275824_3276316_-|transposase	transposase	transposase	NA	NA	NA	NA
3284464:3284481	attR	ACGCCAAACCCCACCGTC	NA	NA	NA	NA
>prophage 5
NC_018522	Klebsiella pneumoniae subsp. pneumoniae 1084, complete sequence	5386705	3525002	3534465	5386705	tRNA,protease	Brazilian_cedratvirus(16.67%)	8	NA	NA
WP_012737718.1|3525002_3526724_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
WP_002898014.1|3526768_3527470_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_001040187.1|3527823_3528042_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002896522.1|3528161_3530441_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
WP_002896520.1|3530471_3530789_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
WP_002896516.1|3531114_3531336_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
WP_004150848.1|3531412_3533353_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
WP_002896440.1|3533349_3534465_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
