assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000284435.1_ASM28443v1	NC_017294	Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome	1	114769-115197	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	Orphan	GTCGCACCTCACGCAGGTGCGTGGATTGAAAT,GTCGCACCTCACGCAGGTGCGTGGATTGAAAT,GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	5,6,6	6	Orphan	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	NA|294aa|up_7|NC_017294.1_100736_101618_+,NA|196aa|up_0|NC_017294.1_113999_114587_+,NA|169aa|down_2|NC_017294.1_117315_117822_-,NA|60aa|down_8|NC_017294.1_119684_119864_+,NA|89aa|down_9|NC_017294.1_119949_120216_+	NA|330aa|up_9|NC_017294.1_98794_99784_+	pfam01933, UPF0052, Uncharacterized protein family UPF0052	NA|301aa|up_8|NC_017294.1_99799_100702_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|294aa|up_7|NC_017294.1_100736_101618_+	NA	NA|614aa|up_6|NC_017294.1_101730_103572_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|1180aa|up_5|NC_017294.1_103672_107212_+	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	NA|320aa|up_4|NC_017294.1_107240_108200_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|474aa|up_3|NC_017294.1_108227_109649_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|397aa|up_2|NC_017294.1_111269_112460_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|435aa|up_1|NC_017294.1_112694_113999_+	COG1106, COG1106, Predicted ATPases [General function prediction only]	NA|196aa|up_0|NC_017294.1_113999_114587_+	NA	NA|84aa|down_0|NC_017294.1_115244_115496_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|245aa|down_1|NC_017294.1_115838_116573_+	pfam12358, DUF3644, Protein of unknown function (DUF3644)	NA|169aa|down_2|NC_017294.1_117315_117822_-	NA	NA|205aa|down_3|NC_017294.1_117858_118473_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|73aa|down_4|NC_017294.1_118647_118866_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|72aa|down_5|NC_017294.1_118872_119088_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|67aa|down_6|NC_017294.1_119206_119407_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|73aa|down_7|NC_017294.1_119461_119680_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|60aa|down_8|NC_017294.1_119684_119864_+	NA	NA|89aa|down_9|NC_017294.1_119949_120216_+	NA
GCF_000284435.1_ASM28443v1	NC_017294	Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome	2	116969-117262	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	Orphan	GTCGCACCTCACGCAGGTGCGTGGATTGAAAT,GTCGCACCTCACGCAGGTGCGTGGATTGAAAT,GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	3,4,4	4	Orphan	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	NA|294aa|up_9|NC_017294.1_100736_101618_+,NA|196aa|up_2|NC_017294.1_113999_114587_+,NA|169aa|down_0|NC_017294.1_117315_117822_-,NA|60aa|down_6|NC_017294.1_119684_119864_+,NA|89aa|down_7|NC_017294.1_119949_120216_+,NA|100aa|down_8|NC_017294.1_120232_120532_+	NA|294aa|up_9|NC_017294.1_100736_101618_+	NA	NA|614aa|up_8|NC_017294.1_101730_103572_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|1180aa|up_7|NC_017294.1_103672_107212_+	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	NA|320aa|up_6|NC_017294.1_107240_108200_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|474aa|up_5|NC_017294.1_108227_109649_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|397aa|up_4|NC_017294.1_111269_112460_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|435aa|up_3|NC_017294.1_112694_113999_+	COG1106, COG1106, Predicted ATPases [General function prediction only]	NA|196aa|up_2|NC_017294.1_113999_114587_+	NA	NA|84aa|up_1|NC_017294.1_115244_115496_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|245aa|up_0|NC_017294.1_115838_116573_+	pfam12358, DUF3644, Protein of unknown function (DUF3644)	NA|169aa|down_0|NC_017294.1_117315_117822_-	NA	NA|205aa|down_1|NC_017294.1_117858_118473_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|73aa|down_2|NC_017294.1_118647_118866_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|72aa|down_3|NC_017294.1_118872_119088_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|67aa|down_4|NC_017294.1_119206_119407_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|73aa|down_5|NC_017294.1_119461_119680_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|60aa|down_6|NC_017294.1_119684_119864_+	NA	NA|89aa|down_7|NC_017294.1_119949_120216_+	NA	NA|100aa|down_8|NC_017294.1_120232_120532_+	NA	NA|379aa|down_9|NC_017294.1_120531_121668_+	pfam10926, DUF2800, Protein of unknown function (DUF2800)
GCF_000284435.1_ASM28443v1	NC_017294	Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome	3	737971-738597	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	Type I-U, Type I-U?,Type I-C	GTCGCACCTCACGCAGGTGCGTGGATTGAAAT,GTCGCACCTCACGCAGGTGCGTGGATTGAAAT,GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	8,9,9	9	TypeI-U,TypeI-U?,TypeI-C	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	NA,NA|58aa|down_2|NC_017294.1_739781_739955_+,NA|142aa|down_6|NC_017294.1_744435_744861_-,NA|202aa|down_8|NC_017294.1_745928_746534_+,NA|114aa|down_9|NC_017294.1_746572_746914_+	NA|502aa|up_9|NC_017294.1_727187_728693_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|132aa|up_8|NC_017294.1_728712_729108_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|310aa|up_7|NC_017294.1_729113_730043_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	cas3|744aa|up_6|NC_017294.1_730185_732417_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|227aa|up_5|NC_017294.1_732434_733115_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|612aa|up_4|NC_017294.1_733111_734947_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|288aa|up_3|NC_017294.1_734949_735813_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|214aa|up_2|NC_017294.1_735826_736468_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|343aa|up_1|NC_017294.1_736468_737497_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_017294.1_737509_737800_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_017294.1_738668_739037_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|142aa|down_1|NC_017294.1_739297_739723_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|58aa|down_2|NC_017294.1_739781_739955_+	NA	NA|640aa|down_3|NC_017294.1_740220_742140_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|472aa|down_4|NC_017294.1_742165_743581_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|245aa|down_5|NC_017294.1_743642_744377_-	pfam07786, DUF1624, Protein of unknown function (DUF1624)	NA|142aa|down_6|NC_017294.1_744435_744861_-	NA	NA|111aa|down_7|NC_017294.1_745120_745453_+	pfam05987, DUF898, Bacterial protein of unknown function (DUF898)	NA|202aa|down_8|NC_017294.1_745928_746534_+	NA	NA|114aa|down_9|NC_017294.1_746572_746914_+	NA
